BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645188|ref|NP_207358.1| hypothetical protein
[Helicobacter pylori 26695]
(416 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1QOX|A Chain A, Beta-Glucosidase From Bacillus Circulan... 29 1.1
pdb|1IIR|A Chain A, Crystal Structure Of Udp-Glucosyltransf... 27 4.3
>pdb|1QOX|A Chain A, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|B Chain B, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|C Chain C, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|D Chain D, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|E Chain E, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|F Chain F, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|G Chain G, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|H Chain H, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|I Chain I, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|J Chain J, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|K Chain K, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|L Chain L, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|M Chain M, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|N Chain N, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|O Chain O, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|P Chain P, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
Length = 449
Score = 28.9 bits (63), Expect = 1.1
Identities = 41/173 (23%), Positives = 71/173 (40%), Gaps = 32/173 (18%)
Query: 136 WFIDPNARG----FLLQFQNHYSPSKPYY-GHAEFM---LDWFGGNCYNTCKFGRNPY-- 185
W++DP G F+L + + P G E + +D+ G N Y + NP
Sbjct: 248 WYLDPIYFGEYPKFMLDWYENLGYKPPIVDGDMELIHQPIDFIGINYYTSSMNRYNPGEA 307
Query: 186 -GNAMDRFQMNGSVAYNFFKDLLGIGGYFVLFHNEDKY-------LLNGA---DGM---- 230
G G+ + ++ G Y +L + DKY NGA DG+
Sbjct: 308 GGMLSSEAISMGAPKTDIGWEIYAEGLYDLLRYTADKYGNPTLYITENGACYNDGLSLDG 367
Query: 231 QFNEKKAIDNSAIYLL-------DRLYYNAYISTSLLDIAPFMEKLSAKFGMV 276
+ ++++ ID A++L+ D + Y+ SL+D + E +FG+V
Sbjct: 368 RIHDQRRIDYLAMHLIQASRAIEDGINLKGYMEWSLMDNFEWAEGYGMRFGLV 420
>pdb|1IIR|A Chain A, Crystal Structure Of Udp-Glucosyltransferase Gtfb
Length = 415
Score = 26.9 bits (58), Expect = 4.3
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 330 YVEMYCTPSYCPTPIYRGVPFFQANMYNRFDFYYNWK--NDFASVRINFVLNAMR 382
Y + PSY P+P Y P + + + D W+ N A R +LN+ R
Sbjct: 120 YFYAFHCPSYVPSPYYPPPPLGEPSTQDTIDIPAQWERNNQSAYQRYGGLLNSHR 174
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.327 0.143 0.465
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,783,764
Number of Sequences: 13198
Number of extensions: 133227
Number of successful extensions: 216
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 216
Number of HSP's gapped (non-prelim): 2
length of query: 416
length of database: 2,899,336
effective HSP length: 91
effective length of query: 325
effective length of database: 1,698,318
effective search space: 551953350
effective search space used: 551953350
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)