BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645189|ref|NP_207359.1| hypothetical protein
[Helicobacter pylori 26695]
(56 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1B28|A Chain A, Arc Repressor Myl Mutant From Salmonell... 23 5.1
pdb|1BAZ|A Chain A, Arc Repressor Mutant Phe10val >gi|41393... 23 6.6
pdb|1QTG|A Chain A, Averaged Nmr Model Of Switch Arc, A Dou... 23 6.6
pdb|1BDT|B Chain B, Wildtype Arc-Dna Cryo >gi|576228|pdb|1P... 23 6.6
pdb|1MYK|A Chain A, Phage P22 Arc Repressor Dimer Mutant Wi... 23 6.6
>pdb|1B28|A Chain A, Arc Repressor Myl Mutant From Salmonella Bacteriophage
P22
pdb|1B28|B Chain B, Arc Repressor Myl Mutant From Salmonella Bacteriophage
P22
pdb|1MYL|A Chain A, Arc Repressor Mutant With Arg 31 Replaced By Met, Glu 36
Replaced By Tyr, Arg 40 Replaced By Leu
(R31m,E36y,R40l)
pdb|1MYL|C Chain C, Arc Repressor Mutant With Arg 31 Replaced By Met, Glu 36
Replaced By Tyr, Arg 40 Replaced By Leu
(R31m,E36y,R40l)
pdb|1MYL|D Chain D, Arc Repressor Mutant With Arg 31 Replaced By Met, Glu 36
Replaced By Tyr, Arg 40 Replaced By Leu
(R31m,E36y,R40l)
pdb|1MYL|E Chain E, Arc Repressor Mutant With Arg 31 Replaced By Met, Glu 36
Replaced By Tyr, Arg 40 Replaced By Leu
(R31m,E36y,R40l)
pdb|1MYL|B Chain B, Arc Repressor Mutant With Arg 31 Replaced By Met, Glu 36
Replaced By Tyr, Arg 40 Replaced By Leu
(R31m,E36y,R40l)
pdb|1MYL|F Chain F, Arc Repressor Mutant With Arg 31 Replaced By Met, Glu 36
Replaced By Tyr, Arg 40 Replaced By Leu
(R31m,E36y,R40l)
Length = 53
Score = 23.5 bits (49), Expect = 5.1
Identities = 8/25 (32%), Positives = 20/25 (80%)
Query: 11 DVLRRLADEEVESVNSFVKRHILKT 35
D++R++A+E SVNS++ + ++++
Sbjct: 20 DLVRKVAEENGMSVNSYIYQLVMES 44
>pdb|1BAZ|A Chain A, Arc Repressor Mutant Phe10val
pdb|1BDV|B Chain B, Arc Fv10 Cocrystal
pdb|1BAZ|C Chain C, Arc Repressor Mutant Phe10val
pdb|1BDV|D Chain D, Arc Fv10 Cocrystal
pdb|1BDV|A Chain A, Arc Fv10 Cocrystal
pdb|1BDV|C Chain C, Arc Fv10 Cocrystal
pdb|1BAZ|B Chain B, Arc Repressor Mutant Phe10val
pdb|1BAZ|D Chain D, Arc Repressor Mutant Phe10val
Length = 53
Score = 23.1 bits (48), Expect = 6.6
Identities = 8/25 (32%), Positives = 19/25 (76%)
Query: 11 DVLRRLADEEVESVNSFVKRHILKT 35
D++R++A+E SVNS + + ++++
Sbjct: 20 DLVRKVAEENGRSVNSEIYQRVMES 44
>pdb|1QTG|A Chain A, Averaged Nmr Model Of Switch Arc, A Double Mutant Of Arc
Repressor
pdb|1QTG|B Chain B, Averaged Nmr Model Of Switch Arc, A Double Mutant Of Arc
Repressor
Length = 53
Score = 23.1 bits (48), Expect = 6.6
Identities = 8/25 (32%), Positives = 19/25 (76%)
Query: 11 DVLRRLADEEVESVNSFVKRHILKT 35
D++R++A+E SVNS + + ++++
Sbjct: 20 DLVRKVAEENGRSVNSEIYQRVMES 44
>pdb|1BDT|B Chain B, Wildtype Arc-Dna Cryo
pdb|1PAR|B Chain B, Arc Repressor And A Synthetic 22-Mer Dna (21 Base-Pairs
And One Base 5' Overhang) Containing The Sequence Of
The Arc Operator
pdb|1PAR|D Chain D, Arc Repressor And A Synthetic 22-Mer Dna (21 Base-Pairs
And One Base 5' Overhang) Containing The Sequence Of
The Arc Operator
pdb|1ARQ|A Chain A, Arc Repressor (Nmr, 16 Structures)
pdb|1ARQ|B Chain B, Arc Repressor (Nmr, 16 Structures)
pdb|1ARR|A Chain A, Arc Repressor (Nmr, Minimized Average Structure)
pdb|1ARR|B Chain B, Arc Repressor (Nmr, Minimized Average Structure)
pdb|1BDT|A Chain A, Wildtype Arc-Dna Cryo
pdb|1PAR|A Chain A, Arc Repressor And A Synthetic 22-Mer Dna (21 Base-Pairs
And One Base 5' Overhang) Containing The Sequence Of
The Arc Operator
pdb|1BDT|C Chain C, Wildtype Arc-Dna Cryo
pdb|1BDT|D Chain D, Wildtype Arc-Dna Cryo
pdb|1PAR|C Chain C, Arc Repressor And A Synthetic 22-Mer Dna (21 Base-Pairs
And One Base 5' Overhang) Containing The Sequence Of
The Arc Operator
Length = 53
Score = 23.1 bits (48), Expect = 6.6
Identities = 8/25 (32%), Positives = 19/25 (76%)
Query: 11 DVLRRLADEEVESVNSFVKRHILKT 35
D++R++A+E SVNS + + ++++
Sbjct: 20 DLVRKVAEENGRSVNSEIYQRVMES 44
>pdb|1MYK|A Chain A, Phage P22 Arc Repressor Dimer Mutant With Pro 8 Replaced
By Leu (P8l)
pdb|1MYK|B Chain B, Phage P22 Arc Repressor Dimer Mutant With Pro 8 Replaced
By Leu (P8l)
Length = 53
Score = 23.1 bits (48), Expect = 6.6
Identities = 8/25 (32%), Positives = 19/25 (76%)
Query: 11 DVLRRLADEEVESVNSFVKRHILKT 35
D++R++A+E SVNS + + ++++
Sbjct: 20 DLVRKVAEENGRSVNSEIYQRVMES 44
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.316 0.131 0.351
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 278,945
Number of Sequences: 13198
Number of extensions: 7268
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 5
length of query: 56
length of database: 2,899,336
effective HSP length: 32
effective length of query: 24
effective length of database: 2,477,000
effective search space: 59448000
effective search space used: 59448000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)