BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645190|ref|NP_207360.1| hypothetical protein
[Helicobacter pylori 26695]
(215 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1CLC| Molecule: Endoglucanase Celd; Ec: 3.2.1.4; Syno... 26 3.1
pdb|1CEN| Cellulase (Celc) Mutant With Glu 140 Replaced B... 26 4.0
pdb|1CEC| Glycosyl Hydrolase, Cellulase, Family A5 OF Cel... 26 4.0
pdb|1FCF|A Chain A, Photosystem Ii D1 C-Terminal Processing... 26 4.0
pdb|1FC6|A Chain A, Photosystem Ii D1 C-Terminal Processing... 26 4.0
pdb|1A6D|B Chain B, Thermosome From T. Acidophilum >gi|4699... 25 6.9
pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome 25 6.9
pdb|1G20|B Chain B, Mgatp-Bound And Nucleotide-Free Structu... 25 6.9
pdb|1M1N|B Chain B, Nitrogenase Mofe Protein From Azotobact... 25 6.9
pdb|1JQG|A Chain A, Crystal Structure Of The Carboxypeptida... 25 9.0
>pdb|1CLC| Molecule: Endoglucanase Celd; Ec: 3.2.1.4; Synonyms:
1,4-Beta-D-Glucan-Glucanohydrolase, Cellulase
Endo-1,4-Beta-Glucanase D
Length = 639
Score = 26.2 bits (56), Expect = 3.1
Identities = 12/49 (24%), Positives = 27/49 (54%)
Query: 38 FVPYEAEGIAPFVANSPFFSFMYKFEKPAYKQHKMSESQSMQEEMQDNP 86
FVP+ + A FVA + + +++ P Y + ++ ++ E +++NP
Sbjct: 281 FVPWSSAATADFVAMTAMAARIFRPYDPQYAEKCINAAKVSYEFLKNNP 329
>pdb|1CEN| Cellulase (Celc) Mutant With Glu 140 Replaced By Gln Complexed
With Cellohexaose
pdb|1CEO| Cellulase (Celc) Mutant With Glu 140 Replaced By Gln
Length = 343
Score = 25.8 bits (55), Expect = 4.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 40 PYEAEGIAPFVANSPFFSFM 59
P + EGI FV N+P +SFM
Sbjct: 226 PGQYEGIEEFVKNNPKYSFM 245
>pdb|1CEC| Glycosyl Hydrolase, Cellulase, Family A5 OF CellulasesGLYCOSYL
HYDROLASES, CLOSTRIDIUM THERMOCELLUM, Endoglucanase C
Mol_id: 1; Molecule: Endoglucanase Celc; Chain: Null;
Synonym: Egc, Cellulase Celc, Endo-1,4-Beta-Glucanase
Celc; Ec: 3.2.1.4; Engineered: Yes; Other_details:
Cellulase Family A5
Length = 343
Score = 25.8 bits (55), Expect = 4.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 40 PYEAEGIAPFVANSPFFSFM 59
P + EGI FV N+P +SFM
Sbjct: 226 PGQYEGIEEFVKNNPKYSFM 245
>pdb|1FCF|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FC9|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FC7|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 25.8 bits (55), Expect = 4.0
Identities = 14/39 (35%), Positives = 21/39 (52%)
Query: 168 VVKDLALFAGGLFVAGFDAKRYLEGKGFCLMDRSSVGIK 206
+V D+ GGLF AG + R L +G ++ S GI+
Sbjct: 232 LVLDIRNNGGGLFPAGVNVARMLVDRGDLVLIADSQGIR 270
>pdb|1FC6|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 25.8 bits (55), Expect = 4.0
Identities = 14/39 (35%), Positives = 21/39 (52%)
Query: 168 VVKDLALFAGGLFVAGFDAKRYLEGKGFCLMDRSSVGIK 206
+V D+ GGLF AG + R L +G ++ S GI+
Sbjct: 232 LVLDIRNNGGGLFPAGVNVARXLVDRGDLVLIADSQGIR 270
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum
pdb|1A6E|B Chain B, Thermosome - Mg-Adp-Alf3 Complex
Length = 543
Score = 25.0 bits (53), Expect = 6.9
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 47 APFVANSPFFSFMYKFEKPAYKQHKMSESQSMQEEMQDNPKIV 89
AP P F + E P+ Q +++ ++M EM D K V
Sbjct: 242 APLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSV 284
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome
Length = 159
Score = 25.0 bits (53), Expect = 6.9
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 47 APFVANSPFFSFMYKFEKPAYKQHKMSESQSMQEEMQDNPKIV 89
AP P F + E P+ Q +++ ++M EM D K V
Sbjct: 29 APLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSV 71
>pdb|1G20|B Chain B, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G20|D Chain D, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G21|B Chain B, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G21|D Chain D, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
Length = 523
Score = 25.0 bits (53), Expect = 6.9
Identities = 13/38 (34%), Positives = 19/38 (49%), Gaps = 3/38 (7%)
Query: 63 EKPAYKQHKMSESQSMQEEMQDNPKIVEN---KEWHKE 97
+ PA Q +M + QEEM+D P + + WH E
Sbjct: 262 DTPADGQFRMYAGGTTQEEMKDAPNALNTVLLQPWHLE 299
>pdb|1M1N|B Chain B, Nitrogenase Mofe Protein From Azotobacter Vinelandii
pdb|1M1N|D Chain D, Nitrogenase Mofe Protein From Azotobacter Vinelandii
pdb|1M1N|F Chain F, Nitrogenase Mofe Protein From Azotobacter Vinelandii
pdb|1M1N|H Chain H, Nitrogenase Mofe Protein From Azotobacter Vinelandii
pdb|2MIN|B Chain B, Nitrogenase Mofe Protein From Azotobacter Vinelandii,
Oxidized State
pdb|2MIN|D Chain D, Nitrogenase Mofe Protein From Azotobacter Vinelandii,
Oxidized State
pdb|3MIN|B Chain B, Nitrogenase Mofe Protein From Azotobacter Vinelandii,
Oxidized State
pdb|3MIN|D Chain D, Nitrogenase Mofe Protein From Azotobacter Vinelandii,
Oxidized State
pdb|1L5H|B Chain B, Femo-Cofactor Deficient Nitrogenase Mofe Protein
pdb|1N2C|B Chain B, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
pdb|1N2C|D Chain D, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
Length = 522
Score = 25.0 bits (53), Expect = 6.9
Identities = 13/38 (34%), Positives = 19/38 (49%), Gaps = 3/38 (7%)
Query: 63 EKPAYKQHKMSESQSMQEEMQDNPKIVEN---KEWHKE 97
+ PA Q +M + QEEM+D P + + WH E
Sbjct: 261 DTPADGQFRMYAGGTTQEEMKDAPNALNTVLLQPWHLE 298
>pdb|1JQG|A Chain A, Crystal Structure Of The Carboxypeptidase A From
Helicoverpa Armigera
Length = 433
Score = 24.6 bits (52), Expect = 9.0
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 33 IGGLKFVPYEAEGIAPFVANSPFFSFMYKFEKPAYK 68
+G + V Y A G A A F Y +E PAY+
Sbjct: 352 VGNIFHVLYAASGGASDYAMQAAAPFSYTYELPAYR 387
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.326 0.142 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,205,479
Number of Sequences: 13198
Number of extensions: 47092
Number of successful extensions: 129
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 121
Number of HSP's gapped (non-prelim): 10
length of query: 215
length of database: 2,899,336
effective HSP length: 84
effective length of query: 131
effective length of database: 1,790,704
effective search space: 234582224
effective search space used: 234582224
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)