BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645193|ref|NP_207363.1| hypothetical protein
[Helicobacter pylori 26695]
(255 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1DJ8|A Chain A, Crystal Structure Of E. Coli Periplasmi... 27 1.8
pdb|1FUY|B Chain B, Crystal Structure Of Betaa169lBETAC170W... 25 6.7
pdb|1K3U|B Chain B, Crystal Structure Of Wild-Type Tryptoph... 25 6.7
pdb|1UBS|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) With... 25 6.7
pdb|1BKS|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) From... 25 6.7
pdb|1A50|B Chain B, Crystal Structure Of Wild-Type Tryptoph... 25 6.7
pdb|1BEU|B Chain B, Trp Synthase (D60n-Ipp-Ser) With K+ >gi... 25 6.7
pdb|1QOQ|B Chain B, Crystal Structure Of Wild-Type Tryptoph... 25 6.7
pdb|2TYS|B Chain B, Crystal Structures Of Mutant (Betak87t)... 25 6.7
pdb|1K7X|B Chain B, Crystal Structure Of The Beta-Ser178pro... 25 6.7
>pdb|1DJ8|A Chain A, Crystal Structure Of E. Coli Periplasmic Protein Hdea
pdb|1DJ8|B Chain B, Crystal Structure Of E. Coli Periplasmic Protein Hdea
pdb|1DJ8|C Chain C, Crystal Structure Of E. Coli Periplasmic Protein Hdea
pdb|1DJ8|D Chain D, Crystal Structure Of E. Coli Periplasmic Protein Hdea
pdb|1DJ8|E Chain E, Crystal Structure Of E. Coli Periplasmic Protein Hdea
pdb|1DJ8|F Chain F, Crystal Structure Of E. Coli Periplasmic Protein Hdea
pdb|1BG8|A Chain A, Hdea From Escherichia Coli
pdb|1BG8|B Chain B, Hdea From Escherichia Coli
pdb|1BG8|C Chain C, Hdea From Escherichia Coli
Length = 89
Score = 27.3 bits (59), Expect = 1.8
Identities = 15/55 (27%), Positives = 27/55 (48%)
Query: 152 KSFLNIQKTFKWPSLNAQNPLNQKSKIPYCYGLIKQIAILSNGVVVPCCMDTQAN 206
+ FL + ++F+ ++ LN K K ++ IA ++ +V C D QAN
Sbjct: 19 EDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQAN 73
>pdb|1FUY|B Chain B, Crystal Structure Of Betaa169lBETAC170W DOUBLE MUTANT OF
Tryptophan Synthase Complexed With
5-Fluoro-Indole-Propanol Phosphate
Length = 396
Score = 25.4 bits (54), Expect = 6.7
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 54 GVYLHDFETLLQDVIYQI--SISLDAGLDHRNKLNQHRYIQKI--LEFCRYKCEKNSEVF 109
G+Y ++Q QI S S+ AGLD + QH Y+ I ++ ++ E F
Sbjct: 276 GIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEAF 335
Query: 110 LNLRIQDSTLDKHQNLIKPFLES 132
TL +H+ +I P LES
Sbjct: 336 -------KTLCRHEGII-PALES 350
>pdb|1K3U|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N-[1h-Indol-3-Yl-Acetyl]aspartic Acid
pdb|1K7E|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N-[1h-Indol-3-Yl-Acetyl]glycine Acid
pdb|1K7F|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N-[1h-Indol-3-Yl-Acetyl]valine Acid
pdb|1QOP|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With Indole Propanol Phosphate
Length = 396
Score = 25.4 bits (54), Expect = 6.7
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 54 GVYLHDFETLLQDVIYQI--SISLDAGLDHRNKLNQHRYIQKI--LEFCRYKCEKNSEVF 109
G+Y ++Q QI S S+ AGLD + QH Y+ I ++ ++ E F
Sbjct: 276 GIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEAF 335
Query: 110 LNLRIQDSTLDKHQNLIKPFLES 132
TL +H+ +I P LES
Sbjct: 336 -------KTLCRHEGII-PALES 350
>pdb|1UBS|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) With A Mutation Of Lys
87 ->thr In The B Subunit And In The Presence Of Ligand
L-Serine
pdb|2TRS|B Chain B, Crystal Structures Of Mutant (Betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-Induced Conformational Changes
pdb|2TSY|B Chain B, Crystal Structures Of Mutant (Betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-Induced Conformational Changes
Length = 397
Score = 25.4 bits (54), Expect = 6.7
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 54 GVYLHDFETLLQDVIYQI--SISLDAGLDHRNKLNQHRYIQKI--LEFCRYKCEKNSEVF 109
G+Y ++Q QI S S+ AGLD + QH Y+ I ++ ++ E F
Sbjct: 277 GIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEAF 336
Query: 110 LNLRIQDSTLDKHQNLIKPFLES 132
TL +H+ +I P LES
Sbjct: 337 -------KTLCRHEGII-PALES 351
>pdb|1BKS|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) From Salmonella
Typhimurium
pdb|1TTQ|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) In The Presence Of
Potassium At Room Temperature
pdb|1TTP|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) In The Presence Of
Cesium, Room Temperature
pdb|1CW2|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2- Hydroxyphenylsulfinyl)-Butylphosphonic Acid
pdb|1C8V|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2- Hydroxyphenylthio)-Butylphosphonic Acid
pdb|1A5S|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With 5-Fluoroindole Propanol Phosphate And
L-Ser Bound As Amino Acrylate To The Beta Site
pdb|1C29|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2- Hydroxyphenylthio)-1-Butenylphosphonic Acid
pdb|1C9D|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2- Hydroxy-4-Fluorophenylthio)-Butylphosphonic Acid
pdb|1CX9|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2- Aminophenylthio)-Butylphosphonic Acid
Length = 397
Score = 25.4 bits (54), Expect = 6.7
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 54 GVYLHDFETLLQDVIYQI--SISLDAGLDHRNKLNQHRYIQKI--LEFCRYKCEKNSEVF 109
G+Y ++Q QI S S+ AGLD + QH Y+ I ++ ++ E F
Sbjct: 277 GIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEAF 336
Query: 110 LNLRIQDSTLDKHQNLIKPFLES 132
TL +H+ +I P LES
Sbjct: 337 -------KTLCRHEGII-PALES 351
>pdb|1A50|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With 5-Fluoroindole Propanol Phosphate
pdb|2WSY|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Length = 396
Score = 25.4 bits (54), Expect = 6.7
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 54 GVYLHDFETLLQDVIYQI--SISLDAGLDHRNKLNQHRYIQKI--LEFCRYKCEKNSEVF 109
G+Y ++Q QI S S+ AGLD + QH Y+ I ++ ++ E F
Sbjct: 276 GIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEAF 335
Query: 110 LNLRIQDSTLDKHQNLIKPFLES 132
TL +H+ +I P LES
Sbjct: 336 -------KTLCRHEGII-PALES 350
>pdb|1BEU|B Chain B, Trp Synthase (D60n-Ipp-Ser) With K+
pdb|1A5A|B Chain B, Cryo-Crystallography Of A True Substrate,
Indole-3-Glycerol Phosphate, Bound To A Mutant
(Alphad60n) Tryptophan Synthase Alpha2beta2 Complex
Reveals The Correct Orientation Of Active Site Alpha Glu
49
pdb|1A5B|B Chain B, Cryo-Crystallography Of A True Substrate,
Indole-3-Glycerol Phosphate, Bound To A Mutant (Alpha
D60n) Tryptophan Synthase Alpha2beta2 Complex Reveals
The Correct Orientation Of Active Site Alpha Glu 49
Length = 397
Score = 25.4 bits (54), Expect = 6.7
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 54 GVYLHDFETLLQDVIYQI--SISLDAGLDHRNKLNQHRYIQKI--LEFCRYKCEKNSEVF 109
G+Y ++Q QI S S+ AGLD + QH Y+ I ++ ++ E F
Sbjct: 277 GIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEAF 336
Query: 110 LNLRIQDSTLDKHQNLIKPFLES 132
TL +H+ +I P LES
Sbjct: 337 -------KTLCRHEGII-PALES 351
>pdb|1QOQ|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With Indole Glycerol Phosphate
Length = 396
Score = 25.4 bits (54), Expect = 6.7
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 54 GVYLHDFETLLQDVIYQI--SISLDAGLDHRNKLNQHRYIQKI--LEFCRYKCEKNSEVF 109
G+Y ++Q QI S S+ AGLD + QH Y+ I ++ ++ E F
Sbjct: 276 GIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEAF 335
Query: 110 LNLRIQDSTLDKHQNLIKPFLES 132
TL +H+ +I P LES
Sbjct: 336 -------KTLCRHEGII-PALES 350
>pdb|2TYS|B Chain B, Crystal Structures Of Mutant (Betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-Induced Conformational Changes
Length = 397
Score = 25.4 bits (54), Expect = 6.7
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 54 GVYLHDFETLLQDVIYQI--SISLDAGLDHRNKLNQHRYIQKI--LEFCRYKCEKNSEVF 109
G+Y ++Q QI S S+ AGLD + QH Y+ I ++ ++ E F
Sbjct: 277 GIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEAF 336
Query: 110 LNLRIQDSTLDKHQNLIKPFLES 132
TL +H+ +I P LES
Sbjct: 337 -------KTLCRHEGII-PALES 351
>pdb|1K7X|B Chain B, Crystal Structure Of The Beta-Ser178pro Mutant Of
Tryptophan Synthase
pdb|1K8Y|B Chain B, Crystal Structure Of The Tryptophan Synthase
Beta-Ser178pro Mutant Complexed With
D,L-Alpha-Glycerol-3-Phosphate
pdb|1K8Z|B Chain B, Crystal Structure Of The Tryptophan Synthase
Beta-Ser178pro Mutant Complexed With
N-[1h-Indol-3-Yl-Acetyl]glycine Acid
Length = 396
Score = 25.4 bits (54), Expect = 6.7
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 54 GVYLHDFETLLQDVIYQI--SISLDAGLDHRNKLNQHRYIQKI--LEFCRYKCEKNSEVF 109
G+Y ++Q QI S S+ AGLD + QH Y+ I ++ ++ E F
Sbjct: 276 GIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEAF 335
Query: 110 LNLRIQDSTLDKHQNLIKPFLES 132
TL +H+ +I P LES
Sbjct: 336 -------KTLCRHEGII-PALES 350
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.323 0.138 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,323,992
Number of Sequences: 13198
Number of extensions: 49300
Number of successful extensions: 89
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 89
Number of HSP's gapped (non-prelim): 10
length of query: 255
length of database: 2,899,336
effective HSP length: 86
effective length of query: 169
effective length of database: 1,764,308
effective search space: 298168052
effective search space used: 298168052
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)