BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645195|ref|NP_207365.1| aminopeptidase a/i (pepA)
[Helicobacter pylori 26695]
(496 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1GYT|A Chain A, E. Coli Aminopeptidase A (Pepa) >gi|217... 218 2e-57
pdb|1LAM| Leucine Aminopeptidase (Unligated) >gi|1127256|... 209 6e-55
pdb|1BLL|E Chain E, Leucine Aminopeptidase (E.C.3.4.11.1) C... 209 6e-55
pdb|1KAS| Beta-Ketoacyl-Acp Synthase Ii From Escherichia ... 29 1.1
pdb|1EXI|A Chain A, Crystal Structure Of Transcription Acti... 27 5.3
pdb|1BG4| Xylanase From Penicillium Simplicissimum >gi|49... 26 9.0
pdb|1K20|A Chain A, Inorganic Pyrophosphatase (Family Ii) F... 26 9.0
>pdb|1GYT|A Chain A, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|B Chain B, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|C Chain C, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|D Chain D, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|E Chain E, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|F Chain F, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|G Chain G, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|H Chain H, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|I Chain I, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|J Chain J, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|K Chain K, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|L Chain L, E. Coli Aminopeptidase A (Pepa)
Length = 503
Score = 218 bits (554), Expect = 2e-57
Identities = 133/379 (35%), Positives = 206/379 (54%), Gaps = 20/379 (5%)
Query: 120 LYEYDTFKSNKKESVLKEAIVALELHKPCEKTCANSLEKSAKEALKYAEIMTESLNIVKD 179
LY +D K+NK E + + + + P + S + A+++ + + KD
Sbjct: 137 LYSFDQLKTNKSEP--RRPLRKMVFNVPTRRELT-----SGERAIQHGLAIAAGIKAAKD 189
Query: 180 LVNTPPMIGTPVYMAEVAQKVAKENHLEI--HVHDEKFLEEKKMNAFLAVNKASLSVNPP 237
L N PP I Y+A A+++A + V E+ ++E M+++LAV + S + +
Sbjct: 190 LGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQNESLM 249
Query: 238 RLIHLVYKPKKAKKKIALVGKGLTYDCGGLSLKPADYMVTMKADKGGGSAVIGLLNALAK 297
+I + + I LVGKGLT+D GG+S+KP++ M MK D G +AV G++ +A+
Sbjct: 250 SVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAE 309
Query: 298 LGVEAEVHGIIGATENMIGPAAYKPDDILISKEGKSIEVRNTDAEGRLVLADCLSYAQDL 357
L + V G++ ENM G AY+P D+L + G+++EV NTDAEGRLVL D L+Y +
Sbjct: 310 LQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERF 369
Query: 358 NPDVIVDFATLTGACVVGLGEFTSAIMGHNEELKNLFETSGLESGELLAKLPFNRHLKKL 417
P+ ++D ATLTGACV+ LG + +M ++ L + + +SG+ +LP ++
Sbjct: 370 EPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQ 429
Query: 418 IESKIADVCNISSSRYGGAITAGLFLNEFIRDEFKDKWLHIDIAGPAYVEKEWDVNSFGA 477
+ES AD+ NI R GGAITAG FL+ F R K W H+DIAG A+ S A
Sbjct: 430 LESNFADMANI-GGRPGGAITAGCFLSRFTR---KYNWAHLDIAGTAW-------RSGKA 478
Query: 478 SGAGVRACTAFVEELLKKA 496
GA R + LL +A
Sbjct: 479 KGATGRPVALLAQFLLNRA 497
>pdb|1LAM| Leucine Aminopeptidase (Unligated)
pdb|1LCP|A Chain A, Bovine Lens Leucine Aminopeptidase Complexed With
L-Leucine Phosphonic Acid
pdb|1LCP|B Chain B, Bovine Lens Leucine Aminopeptidase Complexed With
L-Leucine Phosphonic Acid
pdb|1LAN|A Chain A, Leucine Aminopeptidase Complex With L-Leucinal
Length = 484
Score = 209 bits (532), Expect = 6e-55
Identities = 137/425 (32%), Positives = 218/425 (51%), Gaps = 39/425 (9%)
Query: 70 LRESACLAVRTLKKLAFKSVKVGVYTCGAHSKDNALLENLKALFLGLKLGLYEYDTFKSN 129
+R + R ++ L SV+V CG + +A G LGLYEYD K
Sbjct: 89 IRAAVAAGCRQIQDLEIPSVEVD--PCG----------DAQAAAEGAVLGLYEYDDLKQK 136
Query: 130 KKESVLKEAIVALELHKPCEKTCANSLEKSAKEALKYAEIMTESLNIVKDLVNTPPMIGT 189
+K +V+ +LH +EA + + N+ + L+ TP T
Sbjct: 137 RK------VVVSAKLHG-----------SEDQEAWQRGVLFASGQNLARRLMETPANEMT 179
Query: 190 PVYMAEVAQKVAKENHL--EIHVHDEKFLEEKKMNAFLAVNKASLSVNPPRLIHLVYK-- 245
P AE+ ++ K + ++ + + ++EE++M +FL+V K S PP + + YK
Sbjct: 180 PTKFAEIVEENLKSASIKTDVFIRPKSWIEEQEMGSFLSVAKGS--EEPPVFLEIHYKGS 237
Query: 246 PKKAKKKIALVGKGLTYDCGGLSLKPADYMVTMKADKGGGSAVIGLLNALAKLGVEAEVH 305
P ++ + VGKG+T+D GG+S+K A M M+AD GG + + + + AKL + +
Sbjct: 238 PNASEPPLVFVGKGITFDSGGISIKAAANMDLMRADMGGAATICSAIVSAAKLDLPINIV 297
Query: 306 GIIGATENMIGPAAYKPDDILISKEGKSIEVRNTDAEGRLVLADCLSYAQDLNPDVIVDF 365
G+ ENM A KP D++ ++ GK+I+V NTDAEGRL+LAD L YA NP VI++
Sbjct: 298 GLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILADALCYAHTFNPKVIINA 357
Query: 366 ATLTGACVVGLGEFTSAIMGHNEELKNLFETSGLESGELLAKLP-FNRHLKKLIESKIAD 424
ATLTGA + LG + + ++ L N + +E+G+ + ++P F + +++I+ ++AD
Sbjct: 358 ATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEHYTRQVIDCQLAD 417
Query: 425 VCNISSSRYGGAITAGLFLNEFIRDEFKDKWLHIDIAGPAYVEKEWDVNSFGASGAGVRA 484
V NI R GA TA FL EF+ KW H+DIAG + E G +G R
Sbjct: 418 VNNIGKYRSAGACTAAAFLKEFVT---HPKWAHLDIAGVMTNKDEVPYLRKGMAGRPTRT 474
Query: 485 CTAFV 489
F+
Sbjct: 475 LIEFL 479
>pdb|1BLL|E Chain E, Leucine Aminopeptidase (E.C.3.4.11.1) Complex With
Amastatin
pdb|1LAP| Leucine Aminopeptidase (E.C.3.4.11.1)
pdb|1BPM| Leucine Aminopeptidase (E.C.3.4.11.1)
pdb|1BPN| Leucine Aminopeptidase (E.C.3.4.11.1)
Length = 488
Score = 209 bits (532), Expect = 6e-55
Identities = 137/425 (32%), Positives = 218/425 (51%), Gaps = 39/425 (9%)
Query: 70 LRESACLAVRTLKKLAFKSVKVGVYTCGAHSKDNALLENLKALFLGLKLGLYEYDTFKSN 129
+R + R ++ L SV+V CG + +A G LGLYEYD K
Sbjct: 90 IRAAVAAGCRQIQDLEIPSVEVD--PCG----------DAQAAAEGAVLGLYEYDDLKQK 137
Query: 130 KKESVLKEAIVALELHKPCEKTCANSLEKSAKEALKYAEIMTESLNIVKDLVNTPPMIGT 189
+K +V+ +LH +EA + + N+ + L+ TP T
Sbjct: 138 RK------VVVSAKLHG-----------SEDQEAWQRGVLFASGQNLARRLMETPANEMT 180
Query: 190 PVYMAEVAQKVAKENHL--EIHVHDEKFLEEKKMNAFLAVNKASLSVNPPRLIHLVYK-- 245
P AE+ ++ K + ++ + + ++EE++M +FL+V K S PP + + YK
Sbjct: 181 PTKFAEIVEENLKSASIKTDVFIRPKSWIEEQEMGSFLSVAKGS--EEPPVFLEIHYKGS 238
Query: 246 PKKAKKKIALVGKGLTYDCGGLSLKPADYMVTMKADKGGGSAVIGLLNALAKLGVEAEVH 305
P ++ + VGKG+T+D GG+S+K A M M+AD GG + + + + AKL + +
Sbjct: 239 PNASEPPLVFVGKGITFDSGGISIKAAANMDLMRADMGGAATICSAIVSAAKLDLPINIV 298
Query: 306 GIIGATENMIGPAAYKPDDILISKEGKSIEVRNTDAEGRLVLADCLSYAQDLNPDVIVDF 365
G+ ENM A KP D++ ++ GK+I+V NTDAEGRL+LAD L YA NP VI++
Sbjct: 299 GLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILADALCYAHTFNPKVIINA 358
Query: 366 ATLTGACVVGLGEFTSAIMGHNEELKNLFETSGLESGELLAKLP-FNRHLKKLIESKIAD 424
ATLTGA + LG + + ++ L N + +E+G+ + ++P F + +++I+ ++AD
Sbjct: 359 ATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEHYTRQVIDCQLAD 418
Query: 425 VCNISSSRYGGAITAGLFLNEFIRDEFKDKWLHIDIAGPAYVEKEWDVNSFGASGAGVRA 484
V NI R GA TA FL EF+ KW H+DIAG + E G +G R
Sbjct: 419 VNNIGKYRSAGACTAAAFLKEFVT---HPKWAHLDIAGVMTNKDEVPYLRKGMAGRPTRT 475
Query: 485 CTAFV 489
F+
Sbjct: 476 LIEFL 480
>pdb|1KAS| Beta-Ketoacyl-Acp Synthase Ii From Escherichia Coli
pdb|1B3N|A Chain A, Beta-Ketoacyl Carrier Protein Synthase As A Drug Target,
Implications From The Crystal Structure Of A Complex
With The Inhibitor Cerulenin
Length = 412
Score = 29.3 bits (64), Expect = 1.1
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 10/66 (15%)
Query: 245 KPKKAKKKIALVGKGLTYDCGGLSLKPADYMVTMKADKGGGSAVIGLLNALAKLGVEAEV 304
K + AK LVG G++ D Y +T + G G+A + + NAL G+EA
Sbjct: 247 KKRGAKIYAELVGFGMSSDA---------YHMTSPPENGAGAA-LAMANALRDAGIEASQ 296
Query: 305 HGIIGA 310
G + A
Sbjct: 297 IGYVNA 302
>pdb|1EXI|A Chain A, Crystal Structure Of Transcription Activator Bmrr, From B.
Subtilis, Bound To 21 Base Pair Bmr Operator And Tpsb
pdb|1EXJ|A Chain A, Crystal Structure Of Transcription Activator Bmrr, From B.
Subtilis, Bound To 21 Base Pair Bmr Operator And Tpp
Length = 278
Score = 26.9 bits (58), Expect = 5.3
Identities = 19/69 (27%), Positives = 34/69 (48%), Gaps = 2/69 (2%)
Query: 171 TESLNIVKDLVNTPPMIGTPVYMAEVAQKVAKENHLEIHVHDEKFLEEKKMNAFLAVNKA 230
T+S I DL+ + IGTP+ + AQ + E + E+ + EK FL+ +
Sbjct: 46 TDSQLIHLDLIKSLKYIGTPLEEMKKAQDLEMEELFAFYTEQERQIREKL--DFLSALEQ 103
Query: 231 SLSVNPPRL 239
++S+ R+
Sbjct: 104 TISLVKKRM 112
>pdb|1BG4| Xylanase From Penicillium Simplicissimum
pdb|1B31|A Chain A, Xylanase From Penicillium Simplicissimum, Native With
Peg200 As Cryoprotectant
pdb|1B3X|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylotriose
pdb|1B30|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
1,2-(4-Deoxy-Beta-L-Threo-Hex-4-Enopyranosyluronic
Acid)-Beta-1,4-Xylotriose)
pdb|1B3Z|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylopentaose
pdb|1B3V|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylose
pdb|1B3Y|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylotetraose
pdb|1B3W|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylobiose
Length = 302
Score = 26.2 bits (56), Expect = 9.0
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 283 GGGSAVIGLLNALAKLGVE 301
G GSAV G LNALA G +
Sbjct: 214 GAGSAVAGALNALASAGTK 232
>pdb|1K20|A Chain A, Inorganic Pyrophosphatase (Family Ii) From Streptococcus
Gordonii At 1.5 A Resolution
pdb|1K20|B Chain B, Inorganic Pyrophosphatase (Family Ii) From Streptococcus
Gordonii At 1.5 A Resolution
Length = 310
Score = 26.2 bits (56), Expect = 9.0
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 397 SGLESGELLAKLPFNRHLKKLIESKIADVCNISSSRYGGAI 437
SGL S LL K P K I ++A++ ++ YG A+
Sbjct: 145 SGLISDTLLLKSPTTHPTDKAIAPELAELAGVNLEEYGLAM 185
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.316 0.135 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,825,866
Number of Sequences: 13198
Number of extensions: 117908
Number of successful extensions: 327
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 307
Number of HSP's gapped (non-prelim): 7
length of query: 496
length of database: 2,899,336
effective HSP length: 92
effective length of query: 404
effective length of database: 1,685,120
effective search space: 680788480
effective search space used: 680788480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)