BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645196|ref|NP_207366.1| conserved hypothetical
integral membrane protein [Helicobacter pylori 26695]
         (192 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1QKN|A  Chain A, Rat Oestrogen Receptor Beta Ligand-Bind...    27  2.0
pdb|1TMO|    Trimethylamine N-Oxide Reductase From Shewanell...    25  5.8

>pdb|1QKN|A Chain A, Rat Oestrogen Receptor Beta Ligand-Binding Domain In
           Complex With Antagonist Raloxifene
 pdb|1HJ1|A Chain A, Rat Oestrogen Receptor Beta Ligand-Binding Domain In
           Complex With Pure Antioestrogen Ici164,384
          Length = 255

 Score = 26.6 bits (57), Expect = 2.0
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 141 ASITIILAWYLGEELLHALGWLKKHPYALILLLVSFLALV 180
           AS+ + L     +EL+H +GW KK P  + L L+  + L+
Sbjct: 38  ASMMMSLTKLADKELVHMIGWAKKIPGFVELSLLDQVRLL 77



>pdb|1TMO|   Trimethylamine N-Oxide Reductase From Shewanella Massilia
          Length = 829

 Score = 25.0 bits (53), Expect = 5.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 87  LALAHLLLQKHGWFIIFIQRYMYGMRTIIPISIG 120
           LA+AH ++ K  +   FIQ Y  G    +P  +G
Sbjct: 285 LAIAHEMISKKLYDDKFIQGYSLGFEEFVPYVMG 318



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.330    0.146    0.466 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,106,073
Number of Sequences: 13198
Number of extensions: 40070
Number of successful extensions: 102
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100
Number of HSP's gapped (non-prelim): 2
length of query: 192
length of database: 2,899,336
effective HSP length: 83
effective length of query: 109
effective length of database: 1,803,902
effective search space: 196625318
effective search space used: 196625318
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.3 bits)