BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645197|ref|NP_207367.1| adenine
phosphoribosyltransferase (apt) [Helicobacter pylori 26695]
(179 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1G2Q|A Chain A, Crystal Structure Of Adenine Phosphorib... 135 3e-33
pdb|1QB7|A Chain A, Crystal Structures Of Adenine Phosphori... 82 5e-17
pdb|1CJB|C Chain C, Malarial Purine Phosphoribosyltransfera... 34 0.009
pdb|1I5E|A Chain A, Crystal Structure Of Bacillus Caldolyti... 33 0.025
pdb|1A4X|A Chain A, Pyrr, The Bacillus Subtilis Pyrimidine ... 31 0.072
pdb|1HGX|A Chain A, Hypoxanthine-Guanine-Xanthine Phosphori... 31 0.094
pdb|1A98|B Chain B, Xprtase From E. Coli Complexed With Gmp... 30 0.12
pdb|1A97|B Chain B, Xprtase From E. Coli Complexed With Gmp... 30 0.12
pdb|1A96|C Chain C, Xprtase From E. Coli With Bound Cprpp A... 29 0.27
pdb|1GPH|1 Chain 1, Glutamine Phosphoribosylpyrophosphate (... 28 0.61
pdb|1AO0|A Chain A, Glutamine Phosphoribosylpyrophosphate (... 28 0.61
pdb|1G9S|A Chain A, Crystal Structure Of A Complex Between ... 27 1.0
pdb|1QK5|B Chain B, Toxoplasma Gondii Hypoxanthine-Guanine ... 27 1.4
pdb|1STO| Orotate Phosphoribosyltransferase (Oprtase) (E.... 25 4.0
pdb|1LH0|A Chain A, Crystal Structure Of Salmonella Typhimu... 25 4.0
pdb|1DKR|B Chain B, Crystal Structures Of Bacillus Subtilis... 25 4.0
pdb|1ORO|A Chain A, A Flexible Loop At The Dimer Interface ... 25 4.0
pdb|1NOY|A Chain A, T4 Dna Polymerase Fragment (Residues 1-... 25 5.2
pdb|1QDL|A Chain A, The Crystal Structure Of Anthranilate S... 25 5.2
pdb|1DBR|A Chain A, Hypoxanthine Guanine Xanthine >gi|27811... 25 6.7
pdb|1OUT|A Chain A, Trout Hemoglobin I >gi|1942656|pdb|1OUU... 25 6.7
pdb|1FSG|C Chain C, Toxoplasma Gondii Hypoxanthine-Guanine ... 25 6.7
>pdb|1G2Q|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
pdb|1G2Q|B Chain B, Crystal Structure Of Adenine Phosphoribosyltransferase
pdb|1G2P|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
Length = 187
Score = 135 bits (340), Expect = 3e-33
Identities = 74/171 (43%), Positives = 105/171 (61%), Gaps = 6/171 (3%)
Query: 7 EELLQSIREVKDYPKKGILFKDITTLLNYPKLFNKLIDTLK----KRYLALNIDFIVGIE 62
+EL ++ + ++P +GILF+D + P LF KLID K + + + ID+IVG+E
Sbjct: 8 QELKLALHQYPNFPSEGILFEDFLPIFRNPGLFQKLIDAFKLHLEEAFPEVKIDYIVGLE 67
Query: 63 ARGFILGSALAYALGVGFVPVRKKGKLPAHTLSQSYSLEYGSDSIEIHSDAFRGIKGVRV 122
+RGF+ G LA ALGVGFVPVRK GKLP +Y EYGSD EI +A G V
Sbjct: 68 SRGFLFGPTLALALGVGFVPVRKAGKLPGECFKATYEKEYGSDLFEIQKNAIPA--GSNV 125
Query: 123 VLIDDLLATGGTALASLELIKALQAECIEACFLIGLKELPGIQLLEERVKT 173
+++DD++ATGG+A A+ EL++ L+A +E F++ L L G L V T
Sbjct: 126 IIVDDIIATGGSAAAAGELVEQLEANLLEYNFVMELDFLKGRSKLNAPVFT 176
>pdb|1QB7|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani.
pdb|1QCC|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QB8|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCD|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
Length = 236
Score = 81.6 bits (200), Expect = 5e-17
Identities = 53/154 (34%), Positives = 88/154 (56%), Gaps = 7/154 (4%)
Query: 20 PKKGILFKDITTLLNYPKLFNKLIDTLKKRYLALNI--DFIVGIEARGFILGSALAYALG 77
P+ F D++++ P+ + D L +RY A++ I+G +ARGF+ G +A L
Sbjct: 35 PRNVPRFADVSSITESPETLKAIRDFLVQRYRAMSPAPTHILGFDARGFLFGPMIAVELE 94
Query: 78 VGFVPVRKKGKLPAHTL-SQSYSLEYGSDSIEIHSDAFRGI-KGVRVVLIDDLLATGGTA 135
+ FV +RK K + S+ Y EY + E+ + + I KG RVVLIDD+LATGGTA
Sbjct: 95 IPFVLMRKADKNAGLLIRSEPYEKEYKEAAPEVMTIRYGSIGKGSRVVLIDDVLATGGTA 154
Query: 136 LASLELIKALQAECIEACFLIGLKELPGIQLLEE 169
L+ L+L++A A +E ++ + +P ++ E+
Sbjct: 155 LSGLQLVEASDAVVVE---MVSILSIPFLKAAEK 185
>pdb|1CJB|C Chain C, Malarial Purine Phosphoribosyltransferase
pdb|1CJB|A Chain A, Malarial Purine Phosphoribosyltransferase
pdb|1CJB|B Chain B, Malarial Purine Phosphoribosyltransferase
pdb|1CJB|D Chain D, Malarial Purine Phosphoribosyltransferase
Length = 231
Score = 34.3 bits (77), Expect = 0.009
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 96 QSYSLEYGSDSIEIHSDAFRGIKGVRVVLIDDLLATGGTALASLELIKALQAECIE-ACF 154
+SY + + ++EI S+ +KG V++++D++ TG T + E +K + + + AC
Sbjct: 114 KSYCNDQSTGTLEIVSEDLSCLKGKHVLIVEDIIDTGKTLVKFCEYLKKFEIKTVAIACL 173
Query: 155 LI 156
I
Sbjct: 174 FI 175
>pdb|1I5E|A Chain A, Crystal Structure Of Bacillus Caldolyticus Uracil
Phosphoribosyltransferase With Bound Ump
pdb|1I5E|B Chain B, Crystal Structure Of Bacillus Caldolyticus Uracil
Phosphoribosyltransferase With Bound Ump
Length = 209
Score = 32.7 bits (73), Expect = 0.025
Identities = 16/46 (34%), Positives = 31/46 (66%), Gaps = 2/46 (4%)
Query: 123 VLIDDLLATGGTALASLELIKALQAECIEACFLIGLKELPGIQLLE 168
+++D +LATGG+A+A+++ +K A+ I+ LI E G++ +E
Sbjct: 128 IIVDPMLATGGSAVAAIDALKKRGAKSIKFMCLIAAPE--GVKAVE 171
>pdb|1A4X|A Chain A, Pyrr, The Bacillus Subtilis Pyrimidine Biosynthetic Operon
Repressor, Hexameric Form
pdb|1A4X|B Chain B, Pyrr, The Bacillus Subtilis Pyrimidine Biosynthetic Operon
Repressor, Hexameric Form
pdb|1A3C| Pyrr, The Bacillus Subtilis Pyrimidine Biosynthetic Operon
Repressor, Dimeric Form
Length = 181
Score = 31.2 bits (69), Expect = 0.072
Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 6/131 (4%)
Query: 37 KLFNKLIDTLKKRYLALNIDFIVGIEARGFILGSALAYALG-VGFVPVRKKGKLPAHTLS 95
+ ++ + +R +N +VGI+ RG L LA + + PV G++
Sbjct: 15 RALTRIAHEMIERNKGMNNCILVGIKTRGIYLAKRLAERIEQIEGNPVTV-GEIDITLYR 73
Query: 96 QSYSLEYGSDSIEIH-SDAFRGIKGVRVVLIDDLLATGGTALASLE-LIKALQAECIEAC 153
S + +D + +D I +V+L+DD+L TG T A ++ L+ + I+
Sbjct: 74 DDLSKKTSNDEPLVKGADIPVDITDQKVILVDDVLYTGRTVRAGMDALVDVGRPSSIQLA 133
Query: 154 FLI--GLKELP 162
L+ G +ELP
Sbjct: 134 VLVDRGHRELP 144
>pdb|1HGX|A Chain A, Hypoxanthine-Guanine-Xanthine Phosphoribosyltransferase
(Hgxprtase)
pdb|1HGX|B Chain B, Hypoxanthine-Guanine-Xanthine Phosphoribosyltransferase
(Hgxprtase)
Length = 183
Score = 30.8 bits (68), Expect = 0.094
Identities = 16/66 (24%), Positives = 33/66 (49%)
Query: 90 PAHTLSQSYSLEYGSDSIEIHSDAFRGIKGVRVVLIDDLLATGGTALASLELIKALQAEC 149
P + + SYS + ++ I D I+G V++++D++ TG T L ++ +
Sbjct: 66 PDYIICSSYSGTKSTGNLTISKDLKTNIEGRHVLVVEDIIDTGLTMYQLLNNLQMRKPAS 125
Query: 150 IEACFL 155
++ C L
Sbjct: 126 LKVCTL 131
>pdb|1A98|B Chain B, Xprtase From E. Coli Complexed With Gmp
pdb|1A98|A Chain A, Xprtase From E. Coli Complexed With Gmp
Length = 152
Score = 30.4 bits (67), Expect = 0.12
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 12/74 (16%)
Query: 79 GFVPVRKKGKLPAHTLSQSYSLEYGSDSIEIHS---DAFRGIK--------GVRVVLIDD 127
G + V + G +P L++ + + D++ I S D R +K G ++IDD
Sbjct: 31 GIIAVSRGGLVPGALLARELGIRH-VDTVAISSYDHDNQRELKVLKRAEGDGEGFIVIDD 89
Query: 128 LLATGGTALASLEL 141
L+ TGGTA+A E+
Sbjct: 90 LVDTGGTAVAIREM 103
>pdb|1A97|B Chain B, Xprtase From E. Coli Complexed With Gmp
pdb|1A97|C Chain C, Xprtase From E. Coli Complexed With Gmp
pdb|1A97|A Chain A, Xprtase From E. Coli Complexed With Gmp
pdb|1A97|D Chain D, Xprtase From E. Coli Complexed With Gmp
Length = 148
Score = 30.4 bits (67), Expect = 0.12
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 12/74 (16%)
Query: 79 GFVPVRKKGKLPAHTLSQSYSLEYGSDSIEIHS---DAFRGIK--------GVRVVLIDD 127
G + V + G +P L++ + + D++ I S D R +K G ++IDD
Sbjct: 29 GIIAVSRGGLVPGALLARELGIRH-VDTVAISSYDHDNQRELKVLKRAEGDGEGFIVIDD 87
Query: 128 LLATGGTALASLEL 141
L+ TGGTA+A E+
Sbjct: 88 LVDTGGTAVAIREM 101
>pdb|1A96|C Chain C, Xprtase From E. Coli With Bound Cprpp And Xanthine
pdb|1A95|B Chain B, Xprtase From E. Coli Complexed With Mg:cprpp And Guanine
pdb|1A95|C Chain C, Xprtase From E. Coli Complexed With Mg:cprpp And Guanine
pdb|1A96|B Chain B, Xprtase From E. Coli With Bound Cprpp And Xanthine
pdb|1A95|A Chain A, Xprtase From E. Coli Complexed With Mg:cprpp And Guanine
pdb|1A96|A Chain A, Xprtase From E. Coli With Bound Cprpp And Xanthine
pdb|1NUL|A Chain A, Xprtase From E. Coli
pdb|1A95|D Chain D, Xprtase From E. Coli Complexed With Mg:cprpp And Guanine
pdb|1A96|D Chain D, Xprtase From E. Coli With Bound Cprpp And Xanthine
pdb|1NUL|B Chain B, Xprtase From E. Coli
Length = 152
Score = 29.3 bits (64), Expect = 0.27
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 12/74 (16%)
Query: 79 GFVPVRKKGKLPAHTLSQSYSLEYGSDSIEIHS---DAFRGIK--------GVRVVLIDD 127
G + V + G +P L++ + + D++ I S D R +K G ++IDD
Sbjct: 31 GIIAVSRGGLVPGALLARELGIRH-VDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDD 89
Query: 128 LLATGGTALASLEL 141
L+ TGGTA+A E+
Sbjct: 90 LVDTGGTAVAIREM 103
>pdb|1GPH|1 Chain 1, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase (E.C.2.4.2.14)
pdb|1GPH|2 Chain 2, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase (E.C.2.4.2.14)
pdb|1GPH|3 Chain 3, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase (E.C.2.4.2.14)
pdb|1GPH|4 Chain 4, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase (E.C.2.4.2.14)
Length = 465
Score = 28.1 bits (61), Expect = 0.61
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Query: 52 ALNIDFIVGIEARGFILGSALAYALGVGFVPVRKKGKLPAHTLSQSYSLEYGSDSIEIHS 111
A+ D + G+ A A G+ + K + T Q S + +
Sbjct: 271 AVEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNRYVGRTFIQP-SQALREQGVRMKL 329
Query: 112 DAFRGI-KGVRVVLIDDLLATGGTALASLELIK 143
A RG+ +G RVV++DD + G T+ + +++
Sbjct: 330 SAVRGVVEGKRVVMVDDSIVRGTTSRRIVTMLR 362
>pdb|1AO0|A Chain A, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|B Chain B, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|C Chain C, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|D Chain D, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
Length = 459
Score = 28.1 bits (61), Expect = 0.61
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Query: 52 ALNIDFIVGIEARGFILGSALAYALGVGFVPVRKKGKLPAHTLSQSYSLEYGSDSIEIHS 111
A+ D + G+ A A G+ + K + T Q S + +
Sbjct: 271 AVEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNRYVGRTFIQP-SQALREQGVRMKL 329
Query: 112 DAFRGI-KGVRVVLIDDLLATGGTALASLELIK 143
A RG+ +G RVV++DD + G T+ + +++
Sbjct: 330 SAVRGVVEGKRVVMVDDSIVRGTTSRRIVTMLR 362
>pdb|1G9S|A Chain A, Crystal Structure Of A Complex Between E.Coli Hprt And Imp
pdb|1G9S|B Chain B, Crystal Structure Of A Complex Between E.Coli Hprt And Imp
pdb|1G9T|A Chain A, Crystal Structure Of E.Coli Hprt-Gmp Complex
pdb|1G9T|B Chain B, Crystal Structure Of E.Coli Hprt-Gmp Complex
Length = 182
Score = 27.3 bits (59), Expect = 1.0
Identities = 15/71 (21%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 91 AHTLSQSYSLEYGSD-----SIEIHSDAFRGIKGVRVVLIDDLLATGGTALASLELIKAL 145
+H + + YGS ++I D I+G V++++D++ +G T E++
Sbjct: 63 SHEVDFMTASSYGSGMSTTRDLKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREILSLR 122
Query: 146 QAECIEACFLI 156
+ + + C L+
Sbjct: 123 EPKSLAICTLL 133
>pdb|1QK5|B Chain B, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase With Xmp, Pyrophosphate And
Two Mg2+ Ions
pdb|1QK5|A Chain A, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase With Xmp, Pyrophosphate And
Two Mg2+ Ions
Length = 233
Score = 26.9 bits (58), Expect = 1.4
Identities = 14/61 (22%), Positives = 31/61 (49%)
Query: 96 QSYSLEYGSDSIEIHSDAFRGIKGVRVVLIDDLLATGGTALASLELIKALQAECIEACFL 155
+SY + + + + SD + V++++D++ATG T E +KA+ + + L
Sbjct: 119 KSYQNDNSTGQLTVLSDDLSIFRDKHVLIVEDIVATGFTLTEFGERLKAVGPKSMRIATL 178
Query: 156 I 156
+
Sbjct: 179 V 179
>pdb|1STO| Orotate Phosphoribosyltransferase (Oprtase) (E.C.2.4.2.10)
Length = 213
Score = 25.4 bits (54), Expect = 4.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 121 RVVLIDDLLATGGTALASLELIKA 144
RV+L+DD++ G S+E+I+A
Sbjct: 119 RVMLVDDVITAGTAIRESMEIIQA 142
>pdb|1LH0|A Chain A, Crystal Structure Of Salmonella Typhimurium Omp Synthase
In Complex With Mgprpp And Orotate
pdb|1LH0|B Chain B, Crystal Structure Of Salmonella Typhimurium Omp Synthase
In Complex With Mgprpp And Orotate
pdb|1OPR| Mol_id: 1; Molecule: Orotate Phosphoribosyltransferase; Chain:
Null; Synonym: Oprtase; Ec: 2.4.2.10; Engineered: Yes
Length = 213
Score = 25.4 bits (54), Expect = 4.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 121 RVVLIDDLLATGGTALASLELIKA 144
RV+L+DD++ G S+E+I+A
Sbjct: 119 RVMLVDDVITAGTAIRESMEIIQA 142
>pdb|1DKR|B Chain B, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1IBS|B Chain B, Phosphoribosyldiphosphate Synthetase In Complex With
Cadmium Ions
pdb|1DKR|A Chain A, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1IBS|A Chain A, Phosphoribosyldiphosphate Synthetase In Complex With
Cadmium Ions
pdb|1DKU|A Chain A, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKU|B Chain B, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation
Length = 317
Score = 25.4 bits (54), Expect = 4.0
Identities = 12/37 (32%), Positives = 20/37 (53%)
Query: 117 IKGVRVVLIDDLLATGGTALASLELIKALQAECIEAC 153
I+G +LIDD++ T GT + + A+ + AC
Sbjct: 215 IEGKTAILIDDIIDTAGTITLAANALVENGAKEVYAC 251
>pdb|1ORO|A Chain A, A Flexible Loop At The Dimer Interface Is A Part Of The
Active Site Of The Adjacent Monomer Of Escherichia Coli
Orotate Phosphoribosyltransferase
pdb|1ORO|B Chain B, A Flexible Loop At The Dimer Interface Is A Part Of The
Active Site Of The Adjacent Monomer Of Escherichia Coli
Orotate Phosphoribosyltransferase
Length = 213
Score = 25.4 bits (54), Expect = 4.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 121 RVVLIDDLLATGGTALASLELIKA 144
RV+L+DD++ G S+E+I+A
Sbjct: 119 RVMLVDDVITAGTAIRESMEIIQA 142
>pdb|1NOY|A Chain A, T4 Dna Polymerase Fragment (Residues 1-388) At 298k
pdb|1NOY|B Chain B, T4 Dna Polymerase Fragment (Residues 1-388) At 298k
pdb|1NOZ|A Chain A, T4 Dna Polymerase Fragment (Residues 1-388) At 110k
pdb|1NOZ|B Chain B, T4 Dna Polymerase Fragment (Residues 1-388) At 110k
Length = 388
Score = 25.0 bits (53), Expect = 5.2
Identities = 15/39 (38%), Positives = 22/39 (55%), Gaps = 4/39 (10%)
Query: 33 LNYPKLFNKLIDTLKKRYLALNIDFIVGIEA----RGFI 67
L Y NKL +T +RY++ NI + ++A RGFI
Sbjct: 300 LPYDGPINKLRETNHQRYISYNIIDVESVQAIDKIRGFI 338
>pdb|1QDL|A Chain A, The Crystal Structure Of Anthranilate Synthase From
Sulfolobus Solfataricus
Length = 422
Score = 25.0 bits (53), Expect = 5.2
Identities = 10/18 (55%), Positives = 15/18 (82%)
Query: 38 LFNKLIDTLKKRYLALNI 55
+ +K+I TLKK+Y ALN+
Sbjct: 308 IVSKVIGTLKKKYNALNV 325
>pdb|1DBR|A Chain A, Hypoxanthine Guanine Xanthine
pdb|1DBR|B Chain B, Hypoxanthine Guanine Xanthine
pdb|1DBR|D Chain D, Hypoxanthine Guanine Xanthine
pdb|1DBR|C Chain C, Hypoxanthine Guanine Xanthine
Length = 231
Score = 24.6 bits (52), Expect = 6.7
Identities = 13/61 (21%), Positives = 30/61 (48%)
Query: 96 QSYSLEYGSDSIEIHSDAFRGIKGVRVVLIDDLLATGGTALASLELIKALQAECIEACFL 155
+SY + + + + SD + V++++D++ TG T E +KA+ + + L
Sbjct: 116 KSYQNDNSTGQLTVLSDDLSIFRDKHVLIVEDIVDTGFTLTEFGERLKAVGPKSMRIATL 175
Query: 156 I 156
+
Sbjct: 176 V 176
>pdb|1OUT|A Chain A, Trout Hemoglobin I
pdb|1OUU|A Chain A, Carbonmonoxy Trout Hemoglobin I
pdb|1OUU|C Chain C, Carbonmonoxy Trout Hemoglobin I
Length = 143
Score = 24.6 bits (52), Expect = 6.7
Identities = 16/44 (36%), Positives = 22/44 (49%), Gaps = 1/44 (2%)
Query: 100 LEYGSDSIEIHSDAFRGIKGVRVVLIDDLLATGGTALASLELIK 143
L GS ++ H G G V L+DDL+ G +AL+ L K
Sbjct: 50 LSPGSGPVKKHGGIIMGAIGKAVGLMDDLVG-GMSALSDLHAFK 92
>pdb|1FSG|C Chain C, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase Complexed With 9-Deazaguanine,
Alpha-D-5-Phosphoribosyl-1-Pyrophosphate (Prpp) And Two
Mg2+ Ions
pdb|1FSG|A Chain A, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase Complexed With 9-Deazaguanine,
Alpha-D-5-Phosphoribosyl-1-Pyrophosphate (Prpp) And Two
Mg2+ Ions
pdb|1QK3|B Chain B, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase Gmp Complex
pdb|1QK3|A Chain A, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase Gmp Complex
pdb|1QK4|A Chain A, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase Imp Complex
pdb|1QK3|D Chain D, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase Gmp Complex
pdb|1QK4|B Chain B, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase Imp Complex
pdb|1QK4|D Chain D, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase Imp Complex
pdb|1QK4|C Chain C, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase Imp Complex
pdb|1QK3|C Chain C, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase Gmp Complex
Length = 233
Score = 24.6 bits (52), Expect = 6.7
Identities = 13/61 (21%), Positives = 30/61 (48%)
Query: 96 QSYSLEYGSDSIEIHSDAFRGIKGVRVVLIDDLLATGGTALASLELIKALQAECIEACFL 155
+SY + + + + SD + V++++D++ TG T E +KA+ + + L
Sbjct: 119 KSYQNDNSTGQLTVLSDDLSIFRDKHVLIVEDIVDTGFTLTEFGERLKAVGPKSMRIATL 178
Query: 156 I 156
+
Sbjct: 179 V 179
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.323 0.143 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 972,658
Number of Sequences: 13198
Number of extensions: 37863
Number of successful extensions: 139
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 116
Number of HSP's gapped (non-prelim): 22
length of query: 179
length of database: 2,899,336
effective HSP length: 82
effective length of query: 97
effective length of database: 1,817,100
effective search space: 176258700
effective search space used: 176258700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)