BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645198|ref|NP_207368.1| hypothetical protein
[Helicobacter pylori 26695]
(110 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1GD2|E Chain E, Crystal Structure Of Bzip Transcription... 28 0.15
pdb|1IC2|A Chain A, Deciphering The Design Of The Tropomyos... 28 0.15
pdb|1FOS|F Chain F, Two Human C-Fos:c-Jun:dna Complexes 28 0.19
pdb|1FOS|H Chain H, Two Human C-Fos:c-Jun:dna Complexes 28 0.19
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 27 0.25
pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 A... 27 0.33
pdb|1JUN|A Chain A, Nmr Study Of C-Jun Homodimer >gi|163339... 27 0.33
pdb|2TMA|A Chain A, Tropomyosin >gi|230768|pdb|2TMA|B Chain... 27 0.43
pdb|1I0A|A Chain A, Crystal Structure Of Wild Type Turkey D... 26 0.73
pdb|1GPJ|A Chain A, Glutamyl-Trna Reductase From Methanopyr... 25 0.95
pdb|1DEQ|A Chain A, The Crystal Structure Of Modified Bovin... 25 1.2
pdb|4HB1| A Designed Four Helix Bundle Protein 25 1.6
pdb|1JOC|B Chain B, Eea1 Homodimer Of C-Terminal Fyve Domai... 25 1.6
pdb|1QBQ|A Chain A, Structure Of Rat Farnesyl Protein Trans... 24 2.8
pdb|1APA| X-Ray Structure Of A Pokeweed Antiviral Protein... 24 2.8
pdb|1DGC|A Chain A, Gcn4 Leucine Zipper Complexed With Spec... 23 4.7
pdb|1LD7|A Chain A, Co-Crystal Structure Of Human Farnesylt... 23 4.7
pdb|1L0M|A Chain A, Solution Structure Of Bacteriorhodopsin 23 4.7
pdb|1KME|A Chain A, Crystal Structure Of Bacteriorhodopsin ... 23 4.7
pdb|1AT9| Structure Of Bacteriorhodopsin At 3.0 Angstrom ... 23 4.7
pdb|1F50|A Chain A, Bacteriorhodopsin-Br State Of The E204q... 23 4.7
pdb|1JV7|A Chain A, Bacteriorhodopsin O-Like Intermediate S... 23 4.7
pdb|1E0P|A Chain A, L Intermediate Of Bacteriorhodopsin >gi... 23 4.7
pdb|2DGC|A Chain A, Gcn4 Basic Domain, Leucine Zipper Compl... 23 4.7
pdb|1FBK|A Chain A, Crystal Structure Of Cytoplasmically Op... 23 4.7
pdb|1YSA|D Chain D, Gcn4 (Basic Region, Leucine Zipper) Com... 23 4.7
pdb|1CWQ|A Chain A, M Intermediate Structure Of The Wild Ty... 23 4.7
pdb|1LD4|E Chain E, Placement Of The Structural Proteins In... 23 4.7
pdb|1JV6|A Chain A, Bacteriorhodopsin D85sF219L DOUBLE MUTA... 23 4.7
pdb|1FT2|A Chain A, Co-Crystal Structure Of Protein Farnesy... 23 4.7
pdb|1QHJ|A Chain A, X-Ray Structure Of Bacteriorhodopsin Gr... 23 4.7
pdb|1DGT|B Chain B, Crystal Structure Of Nad+-Dependent Dna... 23 4.7
pdb|1YSA|C Chain C, Gcn4 (Basic Region, Leucine Zipper) Com... 23 4.7
pdb|1KZO|A Chain A, Protein Farnesyltransferase Complexed W... 23 4.7
pdb|1BRD| Bacteriorhodopsin 23 4.7
pdb|1M0K|A Chain A, Bacteriorhodopsin K Intermediate At 1.4... 23 4.7
pdb|1BB1|C Chain C, Crystal Structure Of A Designed, Thermo... 23 4.7
pdb|1HY0|B Chain B, Crystal Structure Of Wild Type Duck Del... 22 8.0
pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta >g... 22 8.0
pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune ... 22 8.0
>pdb|1GD2|E Chain E, Crystal Structure Of Bzip Transcription Factor Pap1 Bound
To Dna
pdb|1GD2|F Chain F, Crystal Structure Of Bzip Transcription Factor Pap1 Bound
To Dna
pdb|1GD2|G Chain G, Crystal Structure Of Bzip Transcription Factor Pap1 Bound
To Dna
pdb|1GD2|H Chain H, Crystal Structure Of Bzip Transcription Factor Pap1 Bound
To Dna
pdb|1GD2|I Chain I, Crystal Structure Of Bzip Transcription Factor Pap1 Bound
To Dna
pdb|1GD2|J Chain J, Crystal Structure Of Bzip Transcription Factor Pap1 Bound
To Dna
Length = 70
Score = 28.1 bits (61), Expect = 0.15
Identities = 10/39 (25%), Positives = 27/39 (68%)
Query: 71 MSSLKTELKALKQRNSEYKGESDKYKNRIKELEQKIEAL 109
+ +L+T++ LK+ +S E+D+ + ++++LE+++ L
Sbjct: 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69
>pdb|1IC2|A Chain A, Deciphering The Design Of The Tropomyosin Molecule
pdb|1IC2|C Chain C, Deciphering The Design Of The Tropomyosin Molecule
pdb|1IC2|B Chain B, Deciphering The Design Of The Tropomyosin Molecule
pdb|1IC2|D Chain D, Deciphering The Design Of The Tropomyosin Molecule
Length = 81
Score = 28.1 bits (61), Expect = 0.15
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 69 QEMSSLKTELKALKQRNSEYKGESDKYKNRIKELEQKIE 107
+ L+ EL AL+++ + E DKY +K+ ++K+E
Sbjct: 34 ERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72
>pdb|1FOS|F Chain F, Two Human C-Fos:c-Jun:dna Complexes
Length = 57
Score = 27.7 bits (60), Expect = 0.19
Identities = 10/38 (26%), Positives = 25/38 (65%)
Query: 69 QEMSSLKTELKALKQRNSEYKGESDKYKNRIKELEQKI 106
+ ++ L+ ++K LK +NSE ++ + ++ +L+QK+
Sbjct: 19 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 56
>pdb|1FOS|H Chain H, Two Human C-Fos:c-Jun:dna Complexes
Length = 58
Score = 27.7 bits (60), Expect = 0.19
Identities = 10/38 (26%), Positives = 25/38 (65%)
Query: 69 QEMSSLKTELKALKQRNSEYKGESDKYKNRIKELEQKI 106
+ ++ L+ ++K LK +NSE ++ + ++ +L+QK+
Sbjct: 20 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 57
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 27.3 bits (59), Expect = 0.25
Identities = 28/92 (30%), Positives = 46/92 (49%), Gaps = 12/92 (13%)
Query: 30 KRQERTNASMKLTLQEAEILIQKHQLQLQRALGNI-----DILTQE--MSSLKTELKALK 82
K+ ++ ++ L+E E QK QL+ A G I DIL E + L E K L+
Sbjct: 951 KKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLE 1010
Query: 83 QRNSE----YKGESDKYKNRIKELEQKIEALL 110
+R S+ E +K KN + +L+ K E+++
Sbjct: 1011 ERVSDLTTNLAEEEEKAKN-LTKLKNKHESMI 1041
Score = 25.0 bits (53), Expect = 1.2
Identities = 20/91 (21%), Positives = 40/91 (42%), Gaps = 5/91 (5%)
Query: 16 LYMGVRTFFFKTVAKRQERTNASMKLTLQEAEILIQKHQLQLQRALGNIDILTQEMSSLK 75
LY + AK+QE ++ L E E I++ + + Q+ + Q+M L+
Sbjct: 907 LYAEAEEMRVRLAAKKQE-----LEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLE 961
Query: 76 TELKALKQRNSEYKGESDKYKNRIKELEQKI 106
+L+ + + + E +IK++E I
Sbjct: 962 EQLEEEEAARQKLQLEKVTADGKIKKMEDDI 992
Score = 22.7 bits (47), Expect = 6.2
Identities = 13/37 (35%), Positives = 20/37 (53%), Gaps = 7/37 (18%)
Query: 69 QEMSSLKTELKALKQRNSEYKGESDKYKNRIKELEQK 105
+EM + EL+ K+R + + E +KELEQK
Sbjct: 857 EEMQAKDEELQRTKERQQKAEAE-------LKELEQK 886
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
Length = 284
Score = 26.9 bits (58), Expect = 0.33
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 74 LKTELKALKQRNSEYKGESDKYKNRIKELEQKIE 107
L+ EL +L+++ + E DKY +K+ ++K+E
Sbjct: 39 LEDELVSLQKKLKATEDELDKYSEALKDAQEKLE 72
Score = 25.4 bits (54), Expect = 0.95
Identities = 11/53 (20%), Positives = 28/53 (52%)
Query: 57 LQRALGNIDILTQEMSSLKTELKALKQRNSEYKGESDKYKNRIKELEQKIEAL 109
L+RA ++ + + L+ E+K + + +++KY + + E++I+ L
Sbjct: 176 LERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVL 228
>pdb|1JUN|A Chain A, Nmr Study Of C-Jun Homodimer
pdb|1JUN|B Chain B, Nmr Study Of C-Jun Homodimer
Length = 44
Score = 26.9 bits (58), Expect = 0.33
Identities = 10/36 (27%), Positives = 24/36 (65%)
Query: 71 MSSLKTELKALKQRNSEYKGESDKYKNRIKELEQKI 106
++ L+ ++K LK +NSE ++ + ++ +L+QK+
Sbjct: 6 IARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 41
>pdb|2TMA|A Chain A, Tropomyosin
pdb|2TMA|B Chain B, Tropomyosin
Length = 284
Score = 26.6 bits (57), Expect = 0.43
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 74 LKTELKALKQRNSEYKGESDKYKNRIKELEQKIE 107
L+ EL +L+++ + E DKY +K+ ++K+E
Sbjct: 39 LEDELVSLQKKLKGTEDELDKYSEALKDAQEKLE 72
Score = 25.4 bits (54), Expect = 0.95
Identities = 11/53 (20%), Positives = 28/53 (52%)
Query: 57 LQRALGNIDILTQEMSSLKTELKALKQRNSEYKGESDKYKNRIKELEQKIEAL 109
L+RA ++ + + L+ E+K + + +++KY + + E++I+ L
Sbjct: 176 LERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVL 228
>pdb|1I0A|A Chain A, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|C Chain C, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|B Chain B, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|D Chain D, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 25.8 bits (55), Expect = 0.73
Identities = 22/68 (32%), Positives = 34/68 (49%), Gaps = 8/68 (11%)
Query: 26 KTVAKRQERTNASMKLTLQEAEILIQKHQLQL-----QRALGNIDILTQEMSSLKTELKA 80
+T R E+ +KL L+ + +I H LQL +RA IDI+ + L+ KA
Sbjct: 108 QTGRSRNEQVVTDLKLLLKSSISVISTHLLQLIKTLVERAAIEIDIIMPGYTHLQ---KA 164
Query: 81 LKQRNSEY 88
L R S++
Sbjct: 165 LPIRWSQF 172
>pdb|1GPJ|A Chain A, Glutamyl-Trna Reductase From Methanopyrus Kandleri
Length = 404
Score = 25.4 bits (54), Expect = 0.95
Identities = 12/69 (17%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 42 TLQEAEILIQKHQLQLQRALGNID-ILTQEMSSLKTELKALKQRNSEYKGESDKYKNRIK 100
T+ + ++ +++ + ++ + ++ ++ +E+S+++ EL+ LK+R ++ + +
Sbjct: 285 TIDDLRVIARENLERRRKEIPKVEKLIEEELSTVEEELEKLKERRLVADVAKSLHEIKDR 344
Query: 101 ELEQKIEAL 109
ELE+ + L
Sbjct: 345 ELERALRRL 353
>pdb|1DEQ|A Chain A, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|D Chain D, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|N Chain N, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|Q Chain Q, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
Length = 390
Score = 25.0 bits (53), Expect = 1.2
Identities = 22/74 (29%), Positives = 36/74 (47%), Gaps = 18/74 (24%)
Query: 47 EILIQKHQLQLQRALGNIDILTQEMSSLKTELKALK--------------QRNSEYKGES 92
EIL +K Q+QR I++L + + ++K L+ R E+K +
Sbjct: 123 EILRRKVIEQVQR----INLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDL 178
Query: 93 DKYKNRIKELEQKI 106
+ YKN+ K+LEQ I
Sbjct: 179 EDYKNQQKQLEQVI 192
>pdb|4HB1| A Designed Four Helix Bundle Protein
Length = 108
Score = 24.6 bits (52), Expect = 1.6
Identities = 15/69 (21%), Positives = 37/69 (52%), Gaps = 1/69 (1%)
Query: 39 MKLTLQEAEILIQKHQLQLQRALGNIDILTQEMSSLKTELKALKQRNSEYKGESDKYKNR 98
+K LQ+A+ L+Q+ Q ++ G ++L Q + + L+ ++ + GE + K
Sbjct: 33 LKQALQQAQQLLQQAQELAKKGGGGEELLKQALQQAQQLLQQAQELAKKGGGE-ELLKQA 91
Query: 99 IKELEQKIE 107
+++ +Q ++
Sbjct: 92 LQQAQQLLQ 100
>pdb|1JOC|B Chain B, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol
1,3-Diphosphate
pdb|1JOC|A Chain A, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol
1,3-Diphosphate
Length = 125
Score = 24.6 bits (52), Expect = 1.6
Identities = 10/31 (32%), Positives = 22/31 (70%)
Query: 77 ELKALKQRNSEYKGESDKYKNRIKELEQKIE 107
E +AL +R + +GE +K + ++ EL++K++
Sbjct: 5 ERRALLERCLKGEGEIEKLQTKVLELQRKLD 35
>pdb|1QBQ|A Chain A, Structure Of Rat Farnesyl Protein Transferase Complexed
With A Cvim Peptide And Alpha-Hydroxyfarnesylphosphonic
Acid
Length = 333
Score = 23.9 bits (50), Expect = 2.8
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 13/60 (21%)
Query: 24 FFKTVAKRQERTNASMKLTLQEAE-------------ILIQKHQLQLQRALGNIDILTQE 70
+F+ V +R ER+ + KLT E +L++ Q LQ + I + +E
Sbjct: 58 YFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYITAIIEE 117
>pdb|1APA| X-Ray Structure Of A Pokeweed Antiviral Protein, Coded By A New
Genomic Clone, At 0.23 Nm Resolution. A Model Structure
Provides A Suitable Electrostatic Field For Substrate
Binding
Length = 266
Score = 23.9 bits (50), Expect = 2.8
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 66 ILTQEMSSLKTELKALKQRNSEYKGESDKYKNRIK 100
++T + SSLKT LK+ N G +D Y + +
Sbjct: 56 LVTLQDSSLKTITLMLKRNNLYVMGYADTYNGKCR 90
>pdb|1DGC|A Chain A, Gcn4 Leucine Zipper Complexed With Specific AtfCREB SITE
DNA
Length = 62
Score = 23.1 bits (48), Expect = 4.7
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 80 ALKQ-RNSEYKGESDKYK-NRIKELEQKIEALL 110
ALK+ RN+E S K R+K+LE K+E LL
Sbjct: 10 ALKRARNTEAARRSRARKLQRMKQLEDKVEELL 42
>pdb|1LD7|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 66
pdb|1LD8|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 49
pdb|1JCQ|A Chain A, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And The
Peptidomimetic Inhibitor L-739,750
Length = 382
Score = 23.1 bits (48), Expect = 4.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 24 FFKTVAKRQERTNASMKLTLQEAEI 48
+F+ V +R ER+ + KLT E+
Sbjct: 102 YFRAVLQRDERSERAFKLTRDAIEL 126
>pdb|1L0M|A Chain A, Solution Structure Of Bacteriorhodopsin
Length = 212
Score = 23.1 bits (48), Expect = 4.7
Identities = 12/32 (37%), Positives = 17/32 (52%)
Query: 2 FTQWFILTIAIVFILYMGVRTFFFKTVAKRQE 33
F W I T A+++ILY+ F K + R E
Sbjct: 129 FVWWAISTAAMLYILYVLFFGFTSKAESMRPE 160
>pdb|1KME|A Chain A, Crystal Structure Of Bacteriorhodopsin Crystallized From
Bicelles
pdb|1KME|B Chain B, Crystal Structure Of Bacteriorhodopsin Crystallized From
Bicelles
pdb|1KGB|A Chain A, Structure Of Ground-State Bacteriorhodopsin
pdb|1KG9|A Chain A, Structure Of A "mock-Trapped" Early-M Intermediate Of
Bacteriorhosopsin
pdb|1KG8|A Chain A, X-Ray Structure Of An Early-M Intermediate Of
Bacteriorhodopsin
Length = 231
Score = 23.1 bits (48), Expect = 4.7
Identities = 12/32 (37%), Positives = 17/32 (52%)
Query: 2 FTQWFILTIAIVFILYMGVRTFFFKTVAKRQE 33
F W I T A+++ILY+ F K + R E
Sbjct: 135 FVWWAISTAAMLYILYVLFFGFTSKAESMRPE 166
>pdb|1AT9| Structure Of Bacteriorhodopsin At 3.0 Angstrom Determined By
Electron Crystallography
pdb|1BRR|C Chain C, X-Ray Structure Of The Bacteriorhodopsin TrimerLIPID
Complex
pdb|1BRR|B Chain B, X-Ray Structure Of The Bacteriorhodopsin TrimerLIPID
Complex
pdb|1BRR|A Chain A, X-Ray Structure Of The Bacteriorhodopsin TrimerLIPID
Complex
pdb|2AT9| Structure Of Bacteriorhodopsin At 3.0 Angstrom By Electron
Crystallography
pdb|2BRD| Crystal Structure Of Bacteriorhodopsin In Purple Membrane
pdb|1BM1| Crystal Structure Of Bacteriorhodopsin In The Light-Adapted State
pdb|1BRX| BacteriorhodopsinLIPID COMPLEX
Length = 247
Score = 23.1 bits (48), Expect = 4.7
Identities = 12/32 (37%), Positives = 17/32 (52%)
Query: 2 FTQWFILTIAIVFILYMGVRTFFFKTVAKRQE 33
F W I T A+++ILY+ F K + R E
Sbjct: 135 FVWWAISTAAMLYILYVLFFGFTSKAESMRPE 166
>pdb|1F50|A Chain A, Bacteriorhodopsin-Br State Of The E204q Mutant At 1.7
Angstrom Resolution
pdb|1F4Z|A Chain A, Bacteriorhodopsin-M Photointermediate State Of The E204q
Mutant At 1.8 Angstrom Resolution
Length = 227
Score = 23.1 bits (48), Expect = 4.7
Identities = 12/32 (37%), Positives = 17/32 (52%)
Query: 2 FTQWFILTIAIVFILYMGVRTFFFKTVAKRQE 33
F W I T A+++ILY+ F K + R E
Sbjct: 131 FVWWAISTAAMLYILYVLFFGFTSKAESMRPE 162
>pdb|1JV7|A Chain A, Bacteriorhodopsin O-Like Intermediate State Of The D85s
Mutant At 2.25 Angstrom Resolution
Length = 249
Score = 23.1 bits (48), Expect = 4.7
Identities = 12/32 (37%), Positives = 17/32 (52%)
Query: 2 FTQWFILTIAIVFILYMGVRTFFFKTVAKRQE 33
F W I T A+++ILY+ F K + R E
Sbjct: 135 FVWWAISTAAMLYILYVLFFGFTSKAESMRPE 166
>pdb|1E0P|A Chain A, L Intermediate Of Bacteriorhodopsin
pdb|1E0P|B Chain B, L Intermediate Of Bacteriorhodopsin
Length = 228
Score = 23.1 bits (48), Expect = 4.7
Identities = 12/32 (37%), Positives = 17/32 (52%)
Query: 2 FTQWFILTIAIVFILYMGVRTFFFKTVAKRQE 33
F W I T A+++ILY+ F K + R E
Sbjct: 131 FVWWAISTAAMLYILYVLFFGFTSKAESMRPE 162
>pdb|2DGC|A Chain A, Gcn4 Basic Domain, Leucine Zipper Complexed With AtfCREB
Site Dna
Length = 63
Score = 23.1 bits (48), Expect = 4.7
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 80 ALKQ-RNSEYKGESDKYK-NRIKELEQKIEALL 110
ALK+ RN+E S K R+K+LE K+E LL
Sbjct: 11 ALKRARNTEAARRSRARKLQRMKQLEDKVEELL 43
>pdb|1FBK|A Chain A, Crystal Structure Of Cytoplasmically Open Conformation Of
Bacteriorhodopsin
Length = 248
Score = 23.1 bits (48), Expect = 4.7
Identities = 12/32 (37%), Positives = 17/32 (52%)
Query: 2 FTQWFILTIAIVFILYMGVRTFFFKTVAKRQE 33
F W I T A+++ILY+ F K + R E
Sbjct: 135 FVWWAISTAAMLYILYVLFFGFTSKAESMRPE 166
>pdb|1YSA|D Chain D, Gcn4 (Basic Region, Leucine Zipper) Complex With Ap-1 Dna
Length = 57
Score = 23.1 bits (48), Expect = 4.7
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 80 ALKQ-RNSEYKGESDKYK-NRIKELEQKIEALL 110
ALK+ RN+E S K R+K+LE K+E LL
Sbjct: 6 ALKRARNTEAARRSRARKLQRMKQLEDKVEELL 38
>pdb|1CWQ|A Chain A, M Intermediate Structure Of The Wild Type
Bacteriorhodopsin In Combination With The Ground State
Structure
pdb|1CWQ|B Chain B, M Intermediate Structure Of The Wild Type
Bacteriorhodopsin In Combination With The Ground State
Structure
Length = 248
Score = 23.1 bits (48), Expect = 4.7
Identities = 12/32 (37%), Positives = 17/32 (52%)
Query: 2 FTQWFILTIAIVFILYMGVRTFFFKTVAKRQE 33
F W I T A+++ILY+ F K + R E
Sbjct: 136 FVWWAISTAAMLYILYVLFFGFTSKAESMRPE 167
>pdb|1LD4|E Chain E, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|F Chain F, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|G Chain G, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|H Chain H, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|I Chain I, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|J Chain J, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|K Chain K, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|L Chain L, Placement Of The Structural Proteins In Sindbis Virus
Length = 57
Score = 23.1 bits (48), Expect = 4.7
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 80 ALKQ-RNSEYKGESDKYK-NRIKELEQKIEALL 110
ALK+ RN+E S K R+K+LE K+E LL
Sbjct: 5 ALKRARNTEAARRSRARKLQRMKQLEDKVEELL 37
>pdb|1JV6|A Chain A, Bacteriorhodopsin D85sF219L DOUBLE MUTANT AT 2.00 ANGSTROM
Resolution
Length = 249
Score = 23.1 bits (48), Expect = 4.7
Identities = 12/32 (37%), Positives = 17/32 (52%)
Query: 2 FTQWFILTIAIVFILYMGVRTFFFKTVAKRQE 33
F W I T A+++ILY+ F K + R E
Sbjct: 135 FVWWAISTAAMLYILYVLFFGFTSKAESMRPE 166
>pdb|1FT2|A Chain A, Co-Crystal Structure Of Protein Farnesyltransferase
Complexed With A Farnesyl Diphosphate Substrate
Length = 315
Score = 23.1 bits (48), Expect = 4.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 24 FFKTVAKRQERTNASMKLTLQEAEI 48
+F+ V +R ER+ + KLT E+
Sbjct: 48 YFRAVLQRDERSERAFKLTRDAIEL 72
>pdb|1QHJ|A Chain A, X-Ray Structure Of Bacteriorhodopsin Grown In Lipidic
Cubic Phases
pdb|1QKO|A Chain A, High Resolution X-Ray Structure Of An Early Intermediate
In The Bacteriorhodopsin Photocycle
pdb|1QKP|A Chain A, High Resolution X-Ray Structure Of An Early Intermediate
In The Bacteriorhodopsin Photocycle
pdb|1QM8|A Chain A, Structure Of Bacteriorhodopsin At 100 K
pdb|1DZE|A Chain A, Structure Of The M Intermediate Of Bacteriorhodopsin
Trapped At 100k
pdb|1FBB|A Chain A, Crystal Structure Of Native Conformation Of
Bacteriorhodopsin
pdb|1AP9| X-Ray Structure Of Bacteriorhodopsin From Microcrystals Grown In
Lipidic Cubic Phases
Length = 248
Score = 23.1 bits (48), Expect = 4.7
Identities = 12/32 (37%), Positives = 17/32 (52%)
Query: 2 FTQWFILTIAIVFILYMGVRTFFFKTVAKRQE 33
F W I T A+++ILY+ F K + R E
Sbjct: 135 FVWWAISTAAMLYILYVLFFGFTSKAESMRPE 166
>pdb|1DGT|B Chain B, Crystal Structure Of Nad+-Dependent Dna Ligase
pdb|1DGS|A Chain A, Crystal Structure Of Nad+-Dependent Dna Ligase From T.
Filiformis
pdb|1DGS|B Chain B, Crystal Structure Of Nad+-Dependent Dna Ligase From T.
Filiformis
pdb|1DGT|A Chain A, Crystal Structure Of Nad+-Dependent Dna Ligase
Length = 667
Score = 23.1 bits (48), Expect = 4.7
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 35 TNASMKLTLQEAEILIQKHQLQLQRALGNIDILTQEMSSLKTELKALKQRNSEYK 89
T + + E LI+ H + L + +I E L ELK L++R E+K
Sbjct: 2 TREEARRRINELRDLIRYHNYRYY-VLADPEISDAEYDRLLRELKELEERFPEFK 55
>pdb|1YSA|C Chain C, Gcn4 (Basic Region, Leucine Zipper) Complex With Ap-1 Dna
Length = 57
Score = 23.1 bits (48), Expect = 4.7
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 80 ALKQ-RNSEYKGESDKYK-NRIKELEQKIEALL 110
ALK+ RN+E S K R+K+LE K+E LL
Sbjct: 5 ALKRARNTEAARRSRARKLQRMKQLEDKVEELL 37
>pdb|1KZO|A Chain A, Protein Farnesyltransferase Complexed With Farnesylated K-
Ras4b Peptide Product And Farnesyl Diphosphate Substrate
Bound Simultaneously
pdb|1KZP|A Chain A, Protein Farnesyltransferase Complexed With A Farnesylated
K- Ras4b Peptide Product
pdb|1D8D|A Chain A, Co-Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A K-Ras4b Peptide Substrate And Fpp
Analog At 2.0a Resolution
pdb|1JCR|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Non-Substrate Tetrapeptide Inhibitor
Cvfm And Farnesyl Diphosphate Substrate
pdb|1JCS|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Peptide Substrate Tkcvfm And An
Analog Of Farnesyl Diphosphate
pdb|1D8E|A Chain A, Zinc-Depleted Ftase Complexed With K-Ras4b Peptide
Substrate And Fpp Analog.
pdb|1FPP|A Chain A, Protein Farnesyltransferase Complex With Farnesyl
Diphosphate
pdb|1FT1|A Chain A, Crystal Structure Of Protein Farnesyltransferase At 2.25
Angstroms Resolution
Length = 377
Score = 23.1 bits (48), Expect = 4.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 24 FFKTVAKRQERTNASMKLTLQEAEI 48
+F+ V +R ER+ + KLT E+
Sbjct: 102 YFRAVLQRDERSERAFKLTRDAIEL 126
>pdb|1BRD| Bacteriorhodopsin
Length = 248
Score = 23.1 bits (48), Expect = 4.7
Identities = 12/32 (37%), Positives = 17/32 (52%)
Query: 2 FTQWFILTIAIVFILYMGVRTFFFKTVAKRQE 33
F W I T A+++ILY+ F K + R E
Sbjct: 135 FVWWAISTAAMLYILYVLFFGFTSKAESMRPE 166
>pdb|1M0K|A Chain A, Bacteriorhodopsin K Intermediate At 1.43 A Resolution
pdb|1M0L|A Chain A, BacteriorhodopsinLIPID COMPLEX AT 1.47 A RESOLUTION
pdb|1M0M|A Chain A, Bacteriorhodopsin M1 Intermediate At 1.43 A Resolution
Length = 262
Score = 23.1 bits (48), Expect = 4.7
Identities = 12/32 (37%), Positives = 17/32 (52%)
Query: 2 FTQWFILTIAIVFILYMGVRTFFFKTVAKRQE 33
F W I T A+++ILY+ F K + R E
Sbjct: 148 FVWWAISTAAMLYILYVLFFGFTSKAESMRPE 179
>pdb|1BB1|C Chain C, Crystal Structure Of A Designed, Thermostable
Heterotrimeric Coiled Coil
Length = 36
Score = 23.1 bits (48), Expect = 4.7
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 77 ELKALKQRNSEYKGESDKYKNRIKELEQKIEAL 109
E+ A+K + + K E K I +EQ I A+
Sbjct: 3 EIAAIKYKQAAIKNEIAAIKQEIAAIEQMIAAI 35
>pdb|1HY0|B Chain B, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
pdb|1HY0|A Chain A, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 22.3 bits (46), Expect = 8.0
Identities = 14/46 (30%), Positives = 23/46 (49%), Gaps = 5/46 (10%)
Query: 27 TVAKRQERTNASMKLTLQEAEILIQKHQLQL-----QRALGNIDIL 67
T R E+ +KL ++ + +I H LQL +RA ID++
Sbjct: 109 TGRSRNEQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVI 154
>pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta
pdb|1JAD|B Chain B, C-Terminal Domain Of Turkey Plc-Beta
Length = 251
Score = 22.3 bits (46), Expect = 8.0
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 70 EMSSLKTELKALKQRNSEYKGESDKYKNRIKELEQKIEA 108
E ++ TEL KQ +E K + ++ IK++++K+EA
Sbjct: 108 EQTAKITELAREKQI-AELKALKESSESNIKDIKKKLEA 145
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 22.3 bits (46), Expect = 8.0
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 69 QEMSSLKTELKALKQRNSEYKGE 91
+E+ ++ E+K + + NS YKGE
Sbjct: 190 EEVVLVEYEIKGVTKDNSGYKGE 212
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.134 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 469,610
Number of Sequences: 13198
Number of extensions: 13463
Number of successful extensions: 102
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 67
Number of HSP's gapped (non-prelim): 45
length of query: 110
length of database: 2,899,336
effective HSP length: 86
effective length of query: 24
effective length of database: 1,764,308
effective search space: 42343392
effective search space used: 42343392
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)