BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645199|ref|NP_207369.1| galactosidase
acetyltransferase (lacA) [Helicobacter pylori 26695]
(151 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1GNC| Granulocyte Colony Stimulating Factor (Rh-G-Csf... 25 3.8
pdb|1RHG|A Chain A, Granulocyte-Colony Stimulating Factor (... 25 3.8
pdb|1IW7|C Chain C, Crystal Structure Of The Rna Polymerase... 25 5.0
pdb|1IQC|A Chain A, Crystal Structure Of Di-Heme Peroxidase... 24 6.5
pdb|1I6V|C Chain C, Thermus Aquaticus Core Rna Polymerase-R... 24 8.5
pdb|1HQM|C Chain C, Crystal Structure Of Thermus Aquaticus ... 24 8.5
pdb|1L9U|C Chain C, Thermus Aquaticus Rna Polymerase Holoen... 24 8.5
>pdb|1GNC| Granulocyte Colony Stimulating Factor (Rh-G-Csf) (Nmr, 10
Structures)
pdb|1CD9|A Chain A, 2:2 Complex Of G-Csf With Its Receptor
pdb|1CD9|C Chain C, 2:2 Complex Of G-Csf With Its Receptor
pdb|1PGR|C Chain C, 2:2 Complex Of G-Csf With Its Receptor
pdb|1PGR|G Chain G, 2:2 Complex Of G-Csf With Its Receptor
pdb|1PGR|E Chain E, 2:2 Complex Of G-Csf With Its Receptor
pdb|1PGR|A Chain A, 2:2 Complex Of G-Csf With Its Receptor
Length = 175
Score = 25.0 bits (53), Expect = 3.8
Identities = 13/45 (28%), Positives = 26/45 (56%)
Query: 16 HAGLHLAEFVQRFLEDKDFKIQAFLPTMRVDYPDYAKLVCQKVLE 60
H+GL L + + + LE ++ L T+++D D+A + Q++ E
Sbjct: 80 HSGLFLYQGLLQALEGISPELGPTLDTLQLDVADFATTIWQQMEE 124
>pdb|1RHG|A Chain A, Granulocyte-Colony Stimulating Factor (R-Hu-Gcsf)
pdb|1RHG|B Chain B, Granulocyte-Colony Stimulating Factor (R-Hu-Gcsf)
pdb|1RHG|C Chain C, Granulocyte-Colony Stimulating Factor (R-Hu-Gcsf)
Length = 174
Score = 25.0 bits (53), Expect = 3.8
Identities = 13/45 (28%), Positives = 26/45 (56%)
Query: 16 HAGLHLAEFVQRFLEDKDFKIQAFLPTMRVDYPDYAKLVCQKVLE 60
H+GL L + + + LE ++ L T+++D D+A + Q++ E
Sbjct: 79 HSGLFLYQGLLQALEGISPELGPTLDTLQLDVADFATTIWQQMEE 123
>pdb|1IW7|C Chain C, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
pdb|1IW7|M Chain M, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
Length = 1119
Score = 24.6 bits (52), Expect = 5.0
Identities = 11/27 (40%), Positives = 16/27 (58%)
Query: 18 GLHLAEFVQRFLEDKDFKIQAFLPTMR 44
G+ L+ ED +FK + FLPT+R
Sbjct: 282 GIRLSGRTLARFEDGEFKDEVFLPTLR 308
>pdb|1IQC|A Chain A, Crystal Structure Of Di-Heme Peroxidase From Nitrosomonas
Europaea
pdb|1IQC|B Chain B, Crystal Structure Of Di-Heme Peroxidase From Nitrosomonas
Europaea
pdb|1IQC|C Chain C, Crystal Structure Of Di-Heme Peroxidase From Nitrosomonas
Europaea
pdb|1IQC|D Chain D, Crystal Structure Of Di-Heme Peroxidase From Nitrosomonas
Europaea
Length = 308
Score = 24.3 bits (51), Expect = 6.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 26 QRFLEDKDFKIQAFLPTMRVDYPDY 50
+ F +D+ KI AFL T+ D PD+
Sbjct: 265 REFNKDEVSKIVAFLKTLTGDQPDF 289
>pdb|1I6V|C Chain C, Thermus Aquaticus Core Rna Polymerase-Rifampicin Complex
Length = 1118
Score = 23.9 bits (50), Expect = 8.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 30 EDKDFKIQAFLPTMR 44
ED +FK + FLPT+R
Sbjct: 294 EDGEFKDEVFLPTLR 308
>pdb|1HQM|C Chain C, Crystal Structure Of Thermus Aquaticus Core Rna
Polymerase- Includes Complete Structure With Side-Chains
(Except For Disordered Regions)-Further Refined From
Original Deposition-Contains Additional Sequence
Information
Length = 1119
Score = 23.9 bits (50), Expect = 8.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 30 EDKDFKIQAFLPTMR 44
ED +FK + FLPT+R
Sbjct: 294 EDGEFKDEVFLPTLR 308
>pdb|1L9U|C Chain C, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9U|L Chain L, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9Z|C Chain C, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction
Promoter Dna Complex At 6.5 A Resolution
Length = 1118
Score = 23.9 bits (50), Expect = 8.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 30 EDKDFKIQAFLPTMR 44
ED +FK + FLPT+R
Sbjct: 294 EDGEFKDEVFLPTLR 308
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.325 0.140 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 781,346
Number of Sequences: 13198
Number of extensions: 28897
Number of successful extensions: 110
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103
Number of HSP's gapped (non-prelim): 7
length of query: 151
length of database: 2,899,336
effective HSP length: 80
effective length of query: 71
effective length of database: 1,843,496
effective search space: 130888216
effective search space used: 130888216
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)