BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645201|ref|NP_207371.1| signal peptidase I (lepB)
[Helicobacter pylori 26695]
(290 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1KN9|C Chain C, Crystal Structure Of A Bacterial Signal... 93 4e-20
pdb|1B12|A Chain A, Crystal Structure Of Type 1 Signal Pept... 92 5e-20
pdb|3SQC|A Chain A, Squalene-Hopene Cyclase >gi|5107753|pdb... 29 0.72
pdb|2SQC|A Chain A, Squalene-Hopene Cyclase From Alicycloba... 29 0.72
pdb|1SQC| Squalene-Hopene-Cyclase From Alicyclobacillus A... 29 0.72
pdb|1BAV|A Chain A, Carboxypeptidase A Complexed With 2-Ben... 28 1.6
pdb|5CPA| Carboxypeptidase Aalpha (Cox) (E.C.3.4.17.1) >g... 28 1.6
pdb|1QJB|B Chain B, 14-3-3 ZetaPHOSPHOPEPTIDE COMPLEX (MODE... 27 2.1
pdb|1I60|A Chain A, Structural Genomics, Ioli Protein >gi|2... 27 2.1
pdb|1EE3|P Chain P, Cadmium-Substituted Bovine Pancreatic C... 27 3.6
pdb|1CBX| Carboxypeptidase A (E.C.3.4.17.1) Complex With ... 27 3.6
pdb|1KOQ|A Chain A, Neisseria Gonorrhoeae Carbonic Anhydrase 27 3.6
pdb|2CTC| Carboxypeptidase A (E.C.3.4.17.1) Complex With ... 27 3.6
pdb|1PYT|B Chain B, Ternary Complex Of Procarboxypeptidase ... 27 3.6
pdb|1F57|A Chain A, Carboxypeptidase A Complex With D-Cyste... 27 3.6
pdb|1KOQ|B Chain B, Neisseria Gonorrhoeae Carbonic Anhydrase 27 3.6
pdb|1KOP|A Chain A, Neisseria Gonorrhoeae Carbonic Anhydras... 27 3.6
pdb|1CS6|A Chain A, N-Terminal Fragment Of Axonin-1 From Ch... 26 4.7
pdb|1C9L|A Chain A, Peptide-In-Groove Interactions Link Tar... 25 8.0
pdb|1CXY|A Chain A, Structure And Characterization Of Ectot... 25 8.0
pdb|1GVI|A Chain A, Thermus Maltogenic Amylase In Complex W... 25 8.0
pdb|1C9I|A Chain A, Peptide-In-Groove Interactions Link Tar... 25 8.0
pdb|1PCA| Procarboxypeptidase A (E.C.3.4.12.2) 25 8.0
pdb|1SMA|A Chain A, Crystal Structure Of A Maltogenic Amyla... 25 8.0
pdb|1BPO|B Chain B, Clathrin Heavy-Chain Terminal Domain An... 25 8.0
>pdb|1KN9|C Chain C, Crystal Structure Of A Bacterial Signal Peptidase Apo-
Enzyme, Implications For Signal Peptide Binding And The
Ser-Lys Dyad Mechanism.
pdb|1KN9|A Chain A, Crystal Structure Of A Bacterial Signal Peptidase Apo-
Enzyme, Implications For Signal Peptide Binding And The
Ser-Lys Dyad Mechanism.
pdb|1KN9|B Chain B, Crystal Structure Of A Bacterial Signal Peptidase Apo-
Enzyme, Implications For Signal Peptide Binding And The
Ser-Lys Dyad Mechanism.
pdb|1KN9|D Chain D, Crystal Structure Of A Bacterial Signal Peptidase Apo-
Enzyme, Implications For Signal Peptide Binding And The
Ser-Lys Dyad Mechanism
Length = 249
Score = 92.8 bits (229), Expect = 4e-20
Identities = 73/242 (30%), Positives = 112/242 (46%), Gaps = 32/242 (13%)
Query: 23 LVIFFIAQAFIIPSRSMVGTLYEGDMLFVKKFSYGIPIPKIPWIELPVMPDFKNNGHLIE 82
+V FI + F IPS SM+ TL GD + V+KF+YGI P LIE
Sbjct: 1 MVRSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIY-------------QKTLIE 47
Query: 83 GDRPKRGEVVVFIPPHEKKSYYVKRNFAIGGDEVLF--TNEGFYLHPFESDTD--KNYIA 138
PKRG++VVF P + K Y+KR + GD+V + ++ + P S +N +
Sbjct: 48 TGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSSGQACENALP 107
Query: 139 KHYPNAMTKEFM------------GKIFVLNPYKNEHPGIHYQKDNETFHLMEQ--LATQ 184
Y N +F+ F + + + GI + ET + L
Sbjct: 108 VTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVP 167
Query: 185 GAEANISMQLIQMEGEKVFYKKINDDEFFMIGDNRDNSSDSRFWGSVAYKNIVGSPWFVY 244
A+ + M Q G+++ + ++FM+GDNRDNS+DSR+WG V N+VG ++
Sbjct: 168 IAQDQVGMYY-QQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIW 226
Query: 245 FS 246
S
Sbjct: 227 MS 228
>pdb|1B12|A Chain A, Crystal Structure Of Type 1 Signal Peptidase From
Escherichia Coli In Complex With A Beta-Lactam Inhibitor
pdb|1B12|C Chain C, Crystal Structure Of Type 1 Signal Peptidase From
Escherichia Coli In Complex With A Beta-Lactam Inhibitor
pdb|1B12|D Chain D, Crystal Structure Of Type 1 Signal Peptidase From
Escherichia Coli In Complex With A Beta-Lactam Inhibitor
pdb|1B12|B Chain B, Crystal Structure Of Type 1 Signal Peptidase From
Escherichia Coli In Complex With A Beta-Lactam Inhibitor
Length = 248
Score = 92.4 bits (228), Expect = 5e-20
Identities = 72/238 (30%), Positives = 110/238 (45%), Gaps = 32/238 (13%)
Query: 27 FIAQAFIIPSRSMVGTLYEGDMLFVKKFSYGIPIPKIPWIELPVMPDFKNNGHLIEGDRP 86
FI + F IPS SM+ TL GD + V+KF+YGI P LIE P
Sbjct: 4 FIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIY-------------QKTLIETGHP 50
Query: 87 KRGEVVVFIPPHEKKSYYVKRNFAIGGDEVLF--TNEGFYLHPFESDTD--KNYIAKHYP 142
KRG++VVF P + K Y+KR + GD+V + ++ + P S +N + Y
Sbjct: 51 KRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYS 110
Query: 143 NAMTKEFM------------GKIFVLNPYKNEHPGIHYQKDNETFHLMEQ--LATQGAEA 188
N +F+ F + + + GI + ET + L A+
Sbjct: 111 NVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQD 170
Query: 189 NISMQLIQMEGEKVFYKKINDDEFFMIGDNRDNSSDSRFWGSVAYKNIVGSPWFVYFS 246
+ M Q G+++ + ++FM+GDNRDNS+DSR+WG V N+VG ++ S
Sbjct: 171 QVGMYY-QQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMS 227
>pdb|3SQC|A Chain A, Squalene-Hopene Cyclase
pdb|3SQC|B Chain B, Squalene-Hopene Cyclase
pdb|3SQC|C Chain C, Squalene-Hopene Cyclase
Length = 631
Score = 28.9 bits (63), Expect = 0.72
Identities = 14/43 (32%), Positives = 22/43 (50%), Gaps = 1/43 (2%)
Query: 6 SVYAFCSSWVGTIVIVLLVIFFIAQAFIIPSRSMVGTLYEGDM 48
++Y F SW V+ L ++ F +P R+ V LYE D+
Sbjct: 162 NIYEF-GSWARATVVALSIVMSRQPVFPLPERARVPELYETDV 203
>pdb|2SQC|A Chain A, Squalene-Hopene Cyclase From Alicyclobacillus
Acidocaldarius
pdb|2SQC|B Chain B, Squalene-Hopene Cyclase From Alicyclobacillus
Acidocaldarius
Length = 631
Score = 28.9 bits (63), Expect = 0.72
Identities = 14/43 (32%), Positives = 22/43 (50%), Gaps = 1/43 (2%)
Query: 6 SVYAFCSSWVGTIVIVLLVIFFIAQAFIIPSRSMVGTLYEGDM 48
++Y F SW V+ L ++ F +P R+ V LYE D+
Sbjct: 162 NIYEF-GSWARATVVALSIVMSRQPVFPLPERARVPELYETDV 203
>pdb|1SQC| Squalene-Hopene-Cyclase From Alicyclobacillus Acidocaldarius
Length = 631
Score = 28.9 bits (63), Expect = 0.72
Identities = 14/43 (32%), Positives = 22/43 (50%), Gaps = 1/43 (2%)
Query: 6 SVYAFCSSWVGTIVIVLLVIFFIAQAFIIPSRSMVGTLYEGDM 48
++Y F SW V+ L ++ F +P R+ V LYE D+
Sbjct: 162 NIYEF-GSWARATVVALSIVMSRQPVFPLPERARVPELYETDV 203
>pdb|1BAV|A Chain A, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
pdb|1BAV|B Chain B, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
pdb|1BAV|C Chain C, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
pdb|1BAV|D Chain D, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
Length = 309
Score = 27.7 bits (60), Expect = 1.6
Identities = 15/43 (34%), Positives = 23/43 (52%)
Query: 28 IAQAFIIPSRSMVGTLYEGDMLFVKKFSYGIPIPKIPWIELPV 70
+AQ + S+ +G YEG ++V KFS G WI+L +
Sbjct: 26 VAQHPELVSKLQIGRSYEGRPIYVLKFSTGGSNRPAIWIDLGI 68
>pdb|5CPA| Carboxypeptidase Aalpha (Cox) (E.C.3.4.17.1)
pdb|1HDU|A Chain A, Crystal Structure Of Bovine Pancreatic Carboxypeptidase
A Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HDU|B Chain B, Crystal Structure Of Bovine Pancreatic Carboxypeptidase
A Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HDU|D Chain D, Crystal Structure Of Bovine Pancreatic Carboxypeptidase
A Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HDU|E Chain E, Crystal Structure Of Bovine Pancreatic Carboxypeptidase
A Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HEE|A Chain A, Crystal Structure Of Bovine Pancreatic Carboxypeptidase
A Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine
At 2.3 A
pdb|1HEE|B Chain B, Crystal Structure Of Bovine Pancreatic Carboxypeptidase
A Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine
At 2.3 A
pdb|1HEE|D Chain D, Crystal Structure Of Bovine Pancreatic Carboxypeptidase
A Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine
At 2.3 A
pdb|1HEE|E Chain E, Crystal Structure Of Bovine Pancreatic Carboxypeptidase
A Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine
At 2.3 A
pdb|3CPA| Carboxypeptidase Aalpha (Cox) (E.C.3.4.17.1) Complex With
Glycyl-L-Tyrosine
pdb|6CPA| Carboxypeptidase A (E.C.3.4.17.1) Complex With The Phosphonate,
ZAAP(O)F
pdb|7CPA| Carboxypeptidase A (E.C.3.4.17.1) Complexed With
(Bz-Phe-Valp(O)-Phe)
pdb|8CPA| Carboxypeptidase A (E.C.3.4.17.1) Complexed With
(Bz-Ala-Glyp(O)-Phe)
pdb|4CPA| Carboxypeptidase Aalpha (Cox) (E.C.3.4.17.1) Complex With Potato
Carboxypeptidase A Inhibitor
Length = 307
Score = 27.7 bits (60), Expect = 1.6
Identities = 15/43 (34%), Positives = 23/43 (52%)
Query: 28 IAQAFIIPSRSMVGTLYEGDMLFVKKFSYGIPIPKIPWIELPV 70
+AQ + S+ +G YEG ++V KFS G WI+L +
Sbjct: 26 VAQHPELVSKLQIGRSYEGRPIYVLKFSTGGSNRPAIWIDLGI 68
>pdb|1QJB|B Chain B, 14-3-3 ZetaPHOSPHOPEPTIDE COMPLEX (MODE 1)
pdb|1IB1|A Chain A, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
pdb|1IB1|B Chain B, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
pdb|1IB1|C Chain C, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
pdb|1IB1|D Chain D, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
pdb|1QJA|B Chain B, 14-3-3 ZetaPHOSPHOPEPTIDE COMPLEX (MODE 2)
pdb|1QJB|A Chain A, 14-3-3 ZetaPHOSPHOPEPTIDE COMPLEX (MODE 1)
pdb|1QJA|A Chain A, 14-3-3 ZetaPHOSPHOPEPTIDE COMPLEX (MODE 2)
pdb|1A38|A Chain A, 14-3-3 Protein Zeta Bound To R18 Peptide
pdb|1A38|B Chain B, 14-3-3 Protein Zeta Bound To R18 Peptide
pdb|1A4O|A Chain A, 14-3-3 Protein Zeta Isoform
pdb|1A4O|B Chain B, 14-3-3 Protein Zeta Isoform
pdb|1A4O|C Chain C, 14-3-3 Protein Zeta Isoform
pdb|1A4O|D Chain D, 14-3-3 Protein Zeta Isoform
pdb|1A37|A Chain A, 14-3-3 Protein Zeta Bound To Ps-Raf259 Peptide
pdb|1A37|B Chain B, 14-3-3 Protein Zeta Bound To Ps-Raf259 Peptide
Length = 245
Score = 27.3 bits (59), Expect = 2.1
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 9/50 (18%)
Query: 222 SSDSRFWGSVAYKNIVG---SPWFVYFSLSLKNSLEMDAENNPKKRYLVR 268
S++ R SVAYKN+VG S W V +S+E E KK+ + R
Sbjct: 37 SNEERNLLSVAYKNVVGARRSSWRVV------SSIEQKTEGAEKKQQMAR 80
>pdb|1I60|A Chain A, Structural Genomics, Ioli Protein
pdb|1I6N|A Chain A, 1.8 A Crystal Structure Of Ioli Protein With A Binding
Zinc Atom
Length = 278
Score = 27.3 bits (59), Expect = 2.1
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 132 TDKNYIAKHYPNAMTKEFMGKI-FVLNPYKNEHPGIHYQKDNETFHLMEQLATQGAEANI 190
T+ + IA+ Y + EF+G +N ++ + ++ + +++ +NI
Sbjct: 126 TELSDIAEPYGVKIALEFVGHPQCTVNTFEQAYEIVNTVNRDNVGLVLDSFHFHAXGSNI 185
Query: 191 SMQLIQMEGEKVFYKKINDDEFFMIGDNRDNSSDSRFW 228
L Q +G+K+F I+D E F IG D + R W
Sbjct: 186 E-SLKQADGKKIFIYHIDDTEDFPIGFLTD---EDRVW 219
>pdb|1EE3|P Chain P, Cadmium-Substituted Bovine Pancreatic Carboxypeptidase A
(Alfa-Form) At Ph 7.5 And 2 Mm Chloride In Monoclinic
Crystal Form
pdb|1ELL|P Chain P, Cadmium-Substituted Bovine Pancreatic Carboxypeptidase A
(Alfa-Form) At Ph 7.5 And 0.25 M Chloride In Monoclinic
Crystal Form.
pdb|1ELM|P Chain P, Cadmium-Substituted Bovine Pacreatic Carboxypeptidase A
(Alfa-Form) At Ph 5.5 And 2 Mm Chloride In Monoclinic
Crystal Form.
pdb|1YME| Structure Of Carboxypeptidase
pdb|1ARM| Carboxypeptidase A With Zn Replaced By Hg
Length = 309
Score = 26.6 bits (57), Expect = 3.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 36 SRSMVGTLYEGDMLFVKKFSYGIPIPKIPWIELPV 70
S+ +G YEG ++V KFS G WI+L +
Sbjct: 34 SKLQIGRSYEGRPIYVLKFSTGGSNRPAIWIDLGI 68
>pdb|1CBX| Carboxypeptidase A (E.C.3.4.17.1) Complex With L-Benzylsuccinate
Inhibitor
pdb|1CPS| Carboxypeptidase A (E.C.3.4.17.1) Complex With The Sulfodiimine
Inhibitor: Cpm,
[l-(-)-2-Carboxy-3-Phenylpropyl]methyl-Sulfodiimine
Length = 307
Score = 26.6 bits (57), Expect = 3.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 36 SRSMVGTLYEGDMLFVKKFSYGIPIPKIPWIELPV 70
S+ +G YEG ++V KFS G WI+L +
Sbjct: 34 SKLQIGRSYEGRPIYVLKFSTGGSNRPAIWIDLGI 68
>pdb|1KOQ|A Chain A, Neisseria Gonorrhoeae Carbonic Anhydrase
Length = 222
Score = 26.6 bits (57), Expect = 3.6
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 62 KIPWIEL---PVMPDFKNNGHLIEGDRPKRGEVV 92
K+P I++ P M D +NNGH I+ + P+ G +
Sbjct: 42 KLPAIKVNYKPSMVDVENNGHTIQVNYPEGGNTL 75
>pdb|2CTC| Carboxypeptidase A (E.C.3.4.17.1) Complex With L-Phenyl Lactate
(L-O-Phe)
pdb|2CTB| Carboxypeptidase A (E.C.3.4.17.1)
pdb|1HDQ|A Chain A, Crystal Structure Of Bovine Pancreatic Carboxypeptidase
A Complexed With D-N-Hydroxyaminocarbonyl Phenylalanine
At 2.3 A
Length = 307
Score = 26.6 bits (57), Expect = 3.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 36 SRSMVGTLYEGDMLFVKKFSYGIPIPKIPWIELPV 70
S+ +G YEG ++V KFS G WI+L +
Sbjct: 34 SKLQIGRSYEGRPIYVLKFSTGGSNRPAIWIDLGI 68
>pdb|1PYT|B Chain B, Ternary Complex Of Procarboxypeptidase A, Proproteinase
E, And Chymotrypsinogen C
Length = 309
Score = 26.6 bits (57), Expect = 3.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 36 SRSMVGTLYEGDMLFVKKFSYGIPIPKIPWIELPV 70
S+ +G YEG ++V KFS G WI+L +
Sbjct: 34 SKLQIGRSYEGRPIYVLKFSTGGSNRPAIWIDLGI 68
>pdb|1F57|A Chain A, Carboxypeptidase A Complex With D-Cysteine At 1.75 A
pdb|1ARL| Carboxypeptidase A With Zn Removed
pdb|1CPX|A Chain A, Beta Form Of Carboxypeptidase A (Residues 3-307) From
Bovine Pancreas In An Orthorhombic Crystal Form With
Two Zinc Ions In The Active Site
Length = 307
Score = 26.6 bits (57), Expect = 3.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 36 SRSMVGTLYEGDMLFVKKFSYGIPIPKIPWIELPV 70
S+ +G YEG ++V KFS G WI+L +
Sbjct: 34 SKLQIGRSYEGRPIYVLKFSTGGSNRPAIWIDLGI 68
>pdb|1KOQ|B Chain B, Neisseria Gonorrhoeae Carbonic Anhydrase
Length = 221
Score = 26.6 bits (57), Expect = 3.6
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 62 KIPWIEL---PVMPDFKNNGHLIEGDRPKRGEVV 92
K+P I++ P M D +NNGH I+ + P+ G +
Sbjct: 41 KLPAIKVNYKPSMVDVENNGHTIQVNYPEGGNTL 74
>pdb|1KOP|A Chain A, Neisseria Gonorrhoeae Carbonic Anhydrase
pdb|1KOP|B Chain B, Neisseria Gonorrhoeae Carbonic Anhydrase
Length = 223
Score = 26.6 bits (57), Expect = 3.6
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 62 KIPWIEL---PVMPDFKNNGHLIEGDRPKRGEVV 92
K+P I++ P M D +NNGH I+ + P+ G +
Sbjct: 43 KLPAIKVNYKPSMVDVENNGHTIQVNYPEGGNTL 76
>pdb|1CS6|A Chain A, N-Terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 26.2 bits (56), Expect = 4.7
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 46 GDMLFVKKFSYGIPIPKIPWIEL 68
G M+ ++ F++G P+P+I W +L
Sbjct: 222 GQMVTLECFAFGNPVPQIKWRKL 244
>pdb|1C9L|A Chain A, Peptide-In-Groove Interactions Link Target Proteins To The
B-Propeller Of Clathrin
pdb|1C9L|B Chain B, Peptide-In-Groove Interactions Link Target Proteins To The
B-Propeller Of Clathrin
Length = 357
Score = 25.4 bits (54), Expect = 8.0
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 7/61 (11%)
Query: 79 HLIEGDRPKRGE-------VVVFIPPHEKKSYYVKRNFAIGGDEVLFTNEGFYLHPFESD 131
H+IE P G V VF PP + + V + D V + Y+H ++ +
Sbjct: 227 HIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLE 286
Query: 132 T 132
T
Sbjct: 287 T 287
>pdb|1CXY|A Chain A, Structure And Characterization Of Ectothiorhodospira
Vacuolata Cytochrome B558, A Prokaryotic Homologue Of
Cytochrome B5
Length = 90
Score = 25.4 bits (54), Expect = 8.0
Identities = 10/26 (38%), Positives = 13/26 (49%)
Query: 140 HYPNAMTKEFMGKIFVLNPYKNEHPG 165
H P+ GK++ L PY HPG
Sbjct: 19 HSPDDCWMAIHGKVYDLTPYVPNHPG 44
>pdb|1GVI|A Chain A, Thermus Maltogenic Amylase In Complex With Beta-Cd
pdb|1GVI|B Chain B, Thermus Maltogenic Amylase In Complex With Beta-Cd
Length = 588
Score = 25.4 bits (54), Expect = 8.0
Identities = 15/42 (35%), Positives = 24/42 (56%), Gaps = 5/42 (11%)
Query: 96 PPHEKKSY-YVKRNFAIGGDEVLFTNEGFYLHPFESDTDKNY 136
PP+ + Y +V R GG+++++T +GFY H SD Y
Sbjct: 77 PPYRRLRYGFVLR---AGGEKLVYTEKGFY-HEAPSDDTAYY 114
>pdb|1C9I|A Chain A, Peptide-In-Groove Interactions Link Target Proteins To The
B-Propeller Of Clathrin
pdb|1C9I|B Chain B, Peptide-In-Groove Interactions Link Target Proteins To The
B-Propeller Of Clathrin
Length = 359
Score = 25.4 bits (54), Expect = 8.0
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 7/61 (11%)
Query: 79 HLIEGDRPKRGE-------VVVFIPPHEKKSYYVKRNFAIGGDEVLFTNEGFYLHPFESD 131
H+IE P G V VF PP + + V + D V + Y+H ++ +
Sbjct: 229 HIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLE 288
Query: 132 T 132
T
Sbjct: 289 T 289
>pdb|1PCA| Procarboxypeptidase A (E.C.3.4.12.2)
Length = 403
Score = 25.4 bits (54), Expect = 8.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 28 IAQAFIIPSRSMVGTLYEGDMLFVKKFSYGIPIPKIPWIE 67
+A+ + S+ +G YEG ++V KFS G WI+
Sbjct: 121 VAEHPALVSKLQIGRSYEGRPIYVLKFSTGGSNRPAIWID 160
>pdb|1SMA|A Chain A, Crystal Structure Of A Maltogenic Amylase
pdb|1SMA|B Chain B, Crystal Structure Of A Maltogenic Amylase
Length = 588
Score = 25.4 bits (54), Expect = 8.0
Identities = 15/42 (35%), Positives = 24/42 (56%), Gaps = 5/42 (11%)
Query: 96 PPHEKKSY-YVKRNFAIGGDEVLFTNEGFYLHPFESDTDKNY 136
PP+ + Y +V R GG+++++T +GFY H SD Y
Sbjct: 77 PPYRRLRYGFVLR---AGGEKLVYTEKGFY-HEAPSDDTAYY 114
>pdb|1BPO|B Chain B, Clathrin Heavy-Chain Terminal Domain And Linker
pdb|1BPO|A Chain A, Clathrin Heavy-Chain Terminal Domain And Linker
pdb|1BPO|C Chain C, Clathrin Heavy-Chain Terminal Domain And Linker
Length = 494
Score = 25.4 bits (54), Expect = 8.0
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 7/61 (11%)
Query: 79 HLIEGDRPKRGE-------VVVFIPPHEKKSYYVKRNFAIGGDEVLFTNEGFYLHPFESD 131
H+IE P G V VF PP + + V + D V + Y+H ++ +
Sbjct: 229 HIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLE 288
Query: 132 T 132
T
Sbjct: 289 T 289
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.140 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,807,053
Number of Sequences: 13198
Number of extensions: 79233
Number of successful extensions: 217
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 195
Number of HSP's gapped (non-prelim): 25
length of query: 290
length of database: 2,899,336
effective HSP length: 87
effective length of query: 203
effective length of database: 1,751,110
effective search space: 355475330
effective search space used: 355475330
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)