BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644689|ref|NP_206859.1| hypothetical protein
[Helicobacter pylori 26695]
(284 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 67 3e-12
pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 A... 55 7e-09
pdb|2TMA|A Chain A, Tropomyosin >gi|230768|pdb|2TMA|B Chain... 55 1e-08
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Co... 39 7e-04
pdb|1BG1|A Chain A, Three-Dimensional Structure Of The Stat... 38 0.001
pdb|1CII| Colicin Ia 35 0.007
pdb|1DN1|B Chain B, Crystal Structure Of The Neuronal-Sec1S... 34 0.022
pdb|1EQ1|A Chain A, Nmr Structure Of An Exchangeable Apolip... 33 0.037
pdb|1M1J|C Chain C, Crystal Structure Of Native Chicken Fib... 32 0.063
pdb|1EI3|C Chain C, Crystal Structure Of Native Chicken Fib... 32 0.063
pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta >g... 32 0.11
pdb|1L8D|A Chain A, Rad50 Coiled-Coil Zn Hook >gi|23200318|... 32 0.11
pdb|1KQL|A Chain A, Crystal Structure Of The C-Terminal Reg... 31 0.18
pdb|1EK9|A Chain A, 2.1a X-Ray Structure Of Tolc: An Integr... 30 0.41
pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor >gi|1697482... 29 0.54
pdb|1EBF|A Chain A, Homoserine Dehydrogenase From S. Cerevi... 29 0.70
pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate... 29 0.70
pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase... 29 0.70
pdb|1FOS|G Chain G, Two Human C-Fos:c-Jun:dna Complexes 28 0.91
pdb|1A02|F Chain F, Structure Of The Dna Binding Domains Of... 28 0.91
pdb|1FOS|E Chain E, Two Human C-Fos:c-Jun:dna Complexes 28 0.91
pdb|1FXK|B Chain B, Crystal Structure Of Archaeal Prefoldin... 28 1.2
pdb|1E7T|A Chain A, Human Vimentin Coil 2b Fragment Linked ... 28 1.2
pdb|1FXK|A Chain A, Crystal Structure Of Archaeal Prefoldin... 28 1.2
pdb|1IC2|A Chain A, Deciphering The Design Of The Tropomyos... 28 1.6
pdb|1FOS|F Chain F, Two Human C-Fos:c-Jun:dna Complexes 27 2.0
pdb|1H6K|C Chain C, Nuclear Cap Binding Complex >gi|1598838... 27 2.0
pdb|1DEQ|B Chain B, The Crystal Structure Of Modified Bovin... 27 2.0
pdb|1FOS|H Chain H, Two Human C-Fos:c-Jun:dna Complexes 27 2.0
pdb|1BR0|A Chain A, Three Dimensional Structure Of The N-Te... 27 2.0
pdb|1EZ3|A Chain A, Crystal Structure Of The Neuronal T-Sna... 27 2.0
pdb|1GPJ|A Chain A, Glutamyl-Trna Reductase From Methanopyr... 27 2.0
pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomeras... 27 2.7
pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In N... 27 3.5
pdb|1ZIK|A Chain A, Gcn4-Leucine Zipper Core Mutant Asn16ly... 27 3.5
pdb|1A36|A Chain A, Human Dna Topoisomerase I (70 Kda) In N... 27 3.5
pdb|1M1J|A Chain A, Crystal Structure Of Native Chicken Fib... 27 3.5
pdb|1EI3|A Chain A, Crystal Structure Of Native Chicken Fib... 27 3.5
pdb|1L8Y|A Chain A, Solution Structure Of Hmg Box 5 In Huma... 27 3.5
pdb|1GL2|B Chain B, Crystal Structure Of An Endosomal Snare... 26 5.9
pdb|1AN2|A Chain A, Recognition By Max Of Its Cognate Dna >... 26 5.9
pdb|1JUN|A Chain A, Nmr Study Of C-Jun Homodimer >gi|163339... 26 5.9
pdb|1HLO|A Chain A, The Crystal Structure Of An Intact Huma... 26 5.9
pdb|1BJT| Topoisomerase Ii Residues 409 - 1201 >gi|163327... 25 7.7
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 66.6 bits (161), Expect = 3e-12
Identities = 69/288 (23%), Positives = 126/288 (42%), Gaps = 34/288 (11%)
Query: 25 LEDENAELFAENEKLALGTSELKDANNQLRQKNDKLFTTKENLTQEK--------TELTE 76
++ ++ EL E+ +ELK+ L QK+ +L K NL QEK E E
Sbjct: 859 MQAKDEELQRTKERQQKAEAELKE----LEQKHTQLCEEK-NLLQEKLQAETELYAEAEE 913
Query: 77 KNKVLTTEKGNLDNQLNASQKQVQALEQSQQVLENEKVELTNKITDLSKEKENLTKANTE 136
L +K L+ L+ + +++ E+ Q L+ EK ++ ++ DL ++ E A +
Sbjct: 914 MRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQK 973
Query: 137 LKTEN-------DKLNHQVIALTKEQDSLKQERAQLQDAHGFL-------EELCANLEK- 181
L+ E K+ ++ + + + L +ER L++ L EE NL K
Sbjct: 974 LQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKL 1033
Query: 182 DNQH------LTDKLKKLESAQKNLENSNDQLLQAIENIAEEKTELEREIARLKSLEATD 235
N+H L +LKK E +++ LE +L ++ E+ EL+ +IA LK+ A
Sbjct: 1034 KNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKK 1093
Query: 236 KSELDLQNCRFKSAIEDLKRQNRKLEEENIALKERAYGLKEQPSKQPK 283
+ EL R + +K+ E + + L+ + + + K
Sbjct: 1094 EEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNK 1141
Score = 64.3 bits (155), Expect = 2e-11
Identities = 65/267 (24%), Positives = 121/267 (44%), Gaps = 47/267 (17%)
Query: 13 QVRKELEARISGLEDENAELFAENEKLALGTSELKDANNQLRQKNDKLFTTKENLTQEKT 72
++ E+EARI E+ + +L AE +K+ ++ D QL + E ++K
Sbjct: 927 EILHEMEARIEEEEERSQQLQAEKKKM---QQQMLDLEEQLEE---------EEAARQKL 974
Query: 73 ELTEKNKVLTTEKGNLDNQLNASQKQVQALEQSQQVLENEKVELTNKITDLS---KEKEN 129
+L EK D ++ + + +E L E+ L +++DL+ E+E
Sbjct: 975 QL---------EKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEE 1025
Query: 130 LTKANTELKTENDKLNHQVIALTKEQDSLKQERAQLQ--------DAHGFLEELCANLEK 181
K T+LK +++ + ++ K+++ +QE +++ D H + EL A + +
Sbjct: 1026 KAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAE 1085
Query: 182 DNQHLTDKLKKLESAQKNLENSNDQLLQAIENIAEEKTELEREIARLKSLEATDKSELDL 241
L K ++L++A LE+ Q A++ I ELE I+ L+ DL
Sbjct: 1086 LKAQLAKKEEELQAALARLEDETSQKNNALKKI----RELESHISDLQE---------DL 1132
Query: 242 QNCRFKSAIEDLKRQNRKLEEENIALK 268
++ K+A ++Q R L EE ALK
Sbjct: 1133 ES--EKAARNKAEKQKRDLSEELEALK 1157
Score = 60.1 bits (144), Expect = 3e-10
Identities = 54/222 (24%), Positives = 101/222 (45%), Gaps = 24/222 (10%)
Query: 15 RKELEARISGLEDENAELFAENEKLALG--TSE------------LKDANNQLRQKNDKL 60
+K+++ ++ LE++ E A +KL L T++ ++D NN+L ++ L
Sbjct: 950 KKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLL 1009
Query: 61 FTTKENLTQEKTELTEKNKVLTTEKGNLDNQLNASQKQVQALEQSQQVLENEKVELTNKI 120
+LT E EK K LT K ++ ++ + +++ E+S+Q LE K +L +
Sbjct: 1010 EERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGES 1069
Query: 121 TDLSKEKENLTKANTELKTENDKLNHQVIALTKEQDSLKQERAQLQDAHGFLEELCANLE 180
+DL ++ L ELK + L K+++ L+ A+L+D +
Sbjct: 1070 SDLHEQIAELQAQIAELKAQ----------LAKKEEELQAALARLEDETSQKNNALKKIR 1119
Query: 181 KDNQHLTDKLKKLESAQKNLENSNDQLLQAIENIAEEKTELE 222
+ H++D + LES + + Q E + KTELE
Sbjct: 1120 ELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELE 1161
Score = 48.1 bits (113), Expect = 1e-06
Identities = 47/189 (24%), Positives = 91/189 (47%), Gaps = 31/189 (16%)
Query: 89 DNQLNASQKQVQALEQSQQVLENEKVELTNKITDLSKEKENLTK---ANTELKTENDKLN 145
+ ++ A +++Q ++ QQ E E EL K T L +EK L + A TEL E +++
Sbjct: 856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMR 915
Query: 146 HQVIALTKEQDSLKQERAQLQDAHGFLEELCANLEKDNQHLTDKLKKLESAQKNLENSND 205
++ A +E + + L E+ A +E++ + + ++L++ +K ++
Sbjct: 916 VRLAAKKQELEEI-------------LHEMEARIEEEEE----RSQQLQAEKKKMQ---Q 955
Query: 206 QLLQAIENIAEEKTELEREIARLKSLEATDKSELDLQNCRFKSAIEDLKRQNRKLEEENI 265
Q+L E + EE E R+ +L+ + A K + + + I ++ QN KL +E
Sbjct: 956 QMLDLEEQLEEE--EAARQKLQLEKVTADGKIK------KMEDDILIMEDQNNKLTKERK 1007
Query: 266 ALKERAYGL 274
L+ER L
Sbjct: 1008 LLEERVSDL 1016
Score = 42.0 bits (97), Expect = 8e-05
Identities = 45/183 (24%), Positives = 73/183 (39%), Gaps = 21/183 (11%)
Query: 15 RKELEARISGLEDENAELFAENEKLALGTSELKDANNQLRQKNDKLFTTKENLTQEKTEL 74
RK LE R+S L AE E+ A ++LK+ + + + + +E QE ++
Sbjct: 1006 RKLLEERVSDLTTN----LAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKI 1061
Query: 75 TEKNKVLTTEKGNLDNQLNASQKQVQALEQSQQVLENEKVELTNKITDLSKEKENLTKAN 134
K L E +L Q+ Q Q+ L+ E E ++ D + +K N K
Sbjct: 1062 KRK---LEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKI 1118
Query: 135 TEL--------------KTENDKLNHQVIALTKEQDSLKQERAQLQDAHGFLEELCANLE 180
EL K +K Q L++E ++LK E D +EL +
Sbjct: 1119 RELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDY 1178
Query: 181 KDN 183
KD+
Sbjct: 1179 KDD 1181
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
Length = 284
Score = 55.5 bits (132), Expect = 7e-09
Identities = 54/255 (21%), Positives = 110/255 (42%), Gaps = 25/255 (9%)
Query: 15 RKELEARISGLEDENAELFAENEKLALGTSELKDANNQLRQKNDKLFTTKENLTQEKTEL 74
+K E R LEDE L +KL EL + L+ +KL ++ T + ++
Sbjct: 29 KKAAEDRSKQLEDELVSL---QKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADV 85
Query: 75 TEKNKVLTTEKGNLDNQLNASQKQVQALEQSQQVLENEKVELTNKITDLSKEKENLTKAN 134
N+ + + LD +Q LE++++ + + + + K++E +
Sbjct: 86 ASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQE 145
Query: 135 TELK------TENDKLNHQV---IALTKEQDSLKQERAQLQDAHGFLEELCANLEKDNQH 185
+LK + D+ +V + + + +ERA+L E CA LE++ +
Sbjct: 146 IQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELS------EGKCAELEEEIKT 199
Query: 186 LTDKLKKLESAQKNLENSNDQLLQAIENIAEEKTE-------LEREIARLKSLEATDKSE 238
+T+ LK LE+ + D+ + I+ ++++ E ER + +L+ + E
Sbjct: 200 VTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDE 259
Query: 239 LDLQNCRFKSAIEDL 253
L Q ++K+ E+L
Sbjct: 260 LYAQKLKYKAISEEL 274
Score = 36.6 bits (83), Expect = 0.003
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 14/141 (9%)
Query: 150 ALTKEQDSLKQERAQLQDAHGFLEELCANLEKDNQHLTDKLKKLESAQKNLENSNDQLLQ 209
A+ K+ LK ++ D E E ++ L D+L L+ K E+ D+ +
Sbjct: 3 AIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSE 62
Query: 210 AIEN------IAEEK-TELEREIARLKSLEATDKSELDLQNCRFKSAIEDLKRQNRKLEE 262
A+++ +AE+K T+ E ++A L + ELD R +A++ KLEE
Sbjct: 63 ALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQ-------KLEE 115
Query: 263 ENIALKERAYGLKEQPSKQPK 283
A E G+K S+ K
Sbjct: 116 AEKAADESERGMKVIESRAQK 136
Score = 35.0 bits (79), Expect = 0.010
Identities = 43/201 (21%), Positives = 83/201 (40%), Gaps = 8/201 (3%)
Query: 18 LEARISGLEDENAELFAENEKLALGTSELKDANNQL--RQKNDKLFTTKENLTQEKTELT 75
L RI E+E L E+LA +L++A ++ K+ ++ +EK E+
Sbjct: 88 LNRRIQLFEEE---LDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQ 144
Query: 76 E-KNKVLTTEKGNLDNQLNASQKQVQALEQSQQVLENEKVELTN-KITDLSKEKENLTKA 133
E + K + D + +++ +E + E E+ EL+ K +L +E + +T
Sbjct: 145 EIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE-ERAELSEGKCAELEEEIKTVTNN 203
Query: 134 NTELKTENDKLNHQVIALTKEQDSLKQERAQLQDAHGFLEELCANLEKDNQHLTDKLKKL 193
L+ + +K + + +E L + + + F E LEK L D+L
Sbjct: 204 LKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQ 263
Query: 194 ESAQKNLENSNDQLLQAIENI 214
+ K + D L + +I
Sbjct: 264 KLKYKAISEELDHALNDMTSI 284
Score = 32.3 bits (72), Expect = 0.063
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 8/129 (6%)
Query: 11 FYQVRKELEARISGLE--DENAELFAENEKLALGTSELKDANNQLRQKNDKLFTTKENLT 68
+ +V ++L S LE +E AEL K A E+K N L+ L E +
Sbjct: 162 YEEVARKLVIIESDLERAEERAEL--SEGKCAELEEEIKTVTNNLKS----LEAQAEKYS 215
Query: 69 QEKTELTEKNKVLTTEKGNLDNQLNASQKQVQALEQSQQVLENEKVELTNKITDLSKEKE 128
Q++ + E+ KVL+ + + + +++ V LE+S LE+E K +S+E +
Sbjct: 216 QKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELD 275
Query: 129 NLTKANTEL 137
+ T +
Sbjct: 276 HALNDMTSI 284
>pdb|2TMA|A Chain A, Tropomyosin
pdb|2TMA|B Chain B, Tropomyosin
Length = 284
Score = 54.7 bits (130), Expect = 1e-08
Identities = 54/255 (21%), Positives = 110/255 (42%), Gaps = 25/255 (9%)
Query: 15 RKELEARISGLEDENAELFAENEKLALGTSELKDANNQLRQKNDKLFTTKENLTQEKTEL 74
+K E R LEDE L +KL EL + L+ +KL ++ T + ++
Sbjct: 29 KKAAEDRSKQLEDELVSL---QKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADV 85
Query: 75 TEKNKVLTTEKGNLDNQLNASQKQVQALEQSQQVLENEKVELTNKITDLSKEKENLTKAN 134
N+ + + LD +Q LE++++ + + + + K++E +
Sbjct: 86 ASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQE 145
Query: 135 TELK------TENDKLNHQV---IALTKEQDSLKQERAQLQDAHGFLEELCANLEKDNQH 185
+LK + D+ +V + + + +ERA+L E CA LE++ +
Sbjct: 146 IQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELS------EGKCAELEEEIKT 199
Query: 186 LTDKLKKLESAQKNLENSNDQLLQAIENIAEEKTE-------LEREIARLKSLEATDKSE 238
+T+ LK LE+ + D+ + I+ ++++ E ER + +L+ + E
Sbjct: 200 VTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDE 259
Query: 239 LDLQNCRFKSAIEDL 253
L Q ++K+ E+L
Sbjct: 260 LYAQKLKYKAISEEL 274
Score = 37.0 bits (84), Expect = 0.003
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 14/141 (9%)
Query: 150 ALTKEQDSLKQERAQLQDAHGFLEELCANLEKDNQHLTDKLKKLESAQKNLENSNDQLLQ 209
A+ K+ LK ++ D E E ++ L D+L L+ K E+ D+ +
Sbjct: 3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSE 62
Query: 210 AIEN------IAEEK-TELEREIARLKSLEATDKSELDLQNCRFKSAIEDLKRQNRKLEE 262
A+++ +AE+K T+ E ++A L + ELD R +A++ KLEE
Sbjct: 63 ALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQ-------KLEE 115
Query: 263 ENIALKERAYGLKEQPSKQPK 283
A E G+K S+ K
Sbjct: 116 AEKAADESERGMKVIESRAQK 136
Score = 35.4 bits (80), Expect = 0.007
Identities = 43/201 (21%), Positives = 84/201 (41%), Gaps = 8/201 (3%)
Query: 18 LEARISGLEDENAELFAENEKLALGTSELKDANNQL--RQKNDKLFTTKENLTQEKTELT 75
L RI +E+E L E+LA +L++A ++ K+ ++ +EK E+
Sbjct: 88 LNRRIQLVEEE---LDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQ 144
Query: 76 E-KNKVLTTEKGNLDNQLNASQKQVQALEQSQQVLENEKVELTN-KITDLSKEKENLTKA 133
E + K + D + +++ +E + E E+ EL+ K +L +E + +T
Sbjct: 145 EIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE-ERAELSEGKCAELEEEIKTVTNN 203
Query: 134 NTELKTENDKLNHQVIALTKEQDSLKQERAQLQDAHGFLEELCANLEKDNQHLTDKLKKL 193
L+ + +K + + +E L + + + F E LEK L D+L
Sbjct: 204 LKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQ 263
Query: 194 ESAQKNLENSNDQLLQAIENI 214
+ K + D L + +I
Sbjct: 264 KLKYKAISEELDHALNDMTSI 284
Score = 32.3 bits (72), Expect = 0.063
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 8/129 (6%)
Query: 11 FYQVRKELEARISGLE--DENAELFAENEKLALGTSELKDANNQLRQKNDKLFTTKENLT 68
+ +V ++L S LE +E AEL K A E+K N L+ L E +
Sbjct: 162 YEEVARKLVIIESDLERAEERAEL--SEGKCAELEEEIKTVTNNLKS----LEAQAEKYS 215
Query: 69 QEKTELTEKNKVLTTEKGNLDNQLNASQKQVQALEQSQQVLENEKVELTNKITDLSKEKE 128
Q++ + E+ KVL+ + + + +++ V LE+S LE+E K +S+E +
Sbjct: 216 QKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELD 275
Query: 129 NLTKANTEL 137
+ T +
Sbjct: 276 HALNDMTSI 284
>pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp.
pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
Length = 592
Score = 38.9 bits (89), Expect = 7e-04
Identities = 58/265 (21%), Positives = 112/265 (41%), Gaps = 36/265 (13%)
Query: 35 ENEKLALGTSELKDANNQLRQKNDKLFTTKENL-TQEKTELTEKNKVLTTEKGNLDNQLN 93
EN LAL E A + ++ K L T+ EL + ++ +E+ ++ +
Sbjct: 313 ENAVLALAQIENSAAVQKAIAHYEQQMGQKVQLPTESLQELLDLHR--DSEREAIEVFIR 370
Query: 94 ASQKQVQALEQSQQVLENEKVELTNKITDLSKEKENLTKANTELKTENDKLNHQVIALTK 153
+S K V L Q + + L K++++ K N E ++ QVI
Sbjct: 371 SSFKDVDHLFQKELAAQ------------LEKKRDDFCKQNQEASSDRCSGLLQVIFSPL 418
Query: 154 EQDSLKQERAQLQDAHGFLEELCANLEKDNQHLTDKLKK-------LESAQKNLENSNDQ 206
E++ +A + G L+ + ++ +K L++ K+ E+ D
Sbjct: 419 EEEV----KAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDA 474
Query: 207 LLQAIENIAEEKTELEREIARLKSLEATDKSELDLQ-------NCRFKSAIEDLKRQNRK 259
+LQ + + E++ E+E E + +S +A+ K ++Q + +S E LK+ K
Sbjct: 475 ILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEK 534
Query: 260 LEEENIAL---KERAYGLKEQPSKQ 281
+E + + L +ER LK Q +Q
Sbjct: 535 MENDRVQLLKEQERTLALKLQEQEQ 559
>pdb|1BG1|A Chain A, Three-Dimensional Structure Of The Stat3b Homodimer Bound
To Dna
Length = 722
Score = 38.1 bits (87), Expect = 0.001
Identities = 42/208 (20%), Positives = 83/208 (39%), Gaps = 36/208 (17%)
Query: 56 KNDKLFTTKENLTQEKTELTEKNKVLTTEKGN-LDNQLNASQKQVQALEQSQQVLEN--- 111
+ +L T Q+ + + TEK L+ L +K+VQ LEQ +V+EN
Sbjct: 111 EESRLLQTAATAAQQGGQANHPTAAVVTEKQQMLEQHLQDVRKRVQDLEQKMKVVENLQD 170
Query: 112 ------EKVELTNKITDLSKEKENLTKAN----TELKTENDKLNHQVIA----------- 150
+ ++ + DL+ +++T+ ++ T D++ +++
Sbjct: 171 DFDFNYKTLKSQGDMQDLNGNNQSVTRQKMQQLEQMLTALDQMRRSIVSELAGLLSAMEY 230
Query: 151 ----LTKEQDSLKQERAQLQDAHG-------FLEELCANLEKDNQHLTDKLKKLESAQKN 199
LT E+ + + R Q+ G LE +L + ++KKLE Q+
Sbjct: 231 VQKTLTDEELADWKRRQQIACIGGPPNICLDRLENWITSLAESQLQTRQQIKKLEELQQK 290
Query: 200 LENSNDQLLQAIENIAEEKTELEREIAR 227
+ D ++Q + E EL R + +
Sbjct: 291 VSYKGDPIVQHRPMLEERIVELFRNLMK 318
>pdb|1CII| Colicin Ia
Length = 602
Score = 35.4 bits (80), Expect = 0.007
Identities = 41/209 (19%), Positives = 88/209 (41%), Gaps = 27/209 (12%)
Query: 21 RISGLEDENAELFAENEKLALGTSELKDANNQLRQKNDKLFTTKENLTQEKTELTEKNKV 80
+ G N + + GT ++ + + N + L ++ L ++N V
Sbjct: 273 KFPGRSSTNDSIVVSGDPRFAGTIKITTSAVIDNRANLNYLLSHSGLDYKRNILNDRNPV 332
Query: 81 LTTEKGNLDNQLNASQKQVQALEQSQQVLENEKVELTNKITDLSKEKENLTKANTELKTE 140
+T + NA +V ++ +Q L + + ++T+ + ++ + NL+ E K
Sbjct: 333 VTEDVEGDKKIYNA---EVAEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHA 389
Query: 141 NDKLNHQVIALTKEQDSLKQERAQLQDAHGFLEELCANLEKDNQHLTDKLKKLE--SAQK 198
ND LN AL KE+++++ + L NQ + ++ +K + A K
Sbjct: 390 NDALN----ALLKEKENIRNQ-----------------LSGINQKIAEEKRKQDELKATK 428
Query: 199 NLENSNDQLLQAI-ENIAEEKTELEREIA 226
+ N + L+++ E + +L RE+A
Sbjct: 429 DAINFTTEFLKSVSEKYGAKAEQLAREMA 457
Score = 31.6 bits (70), Expect = 0.11
Identities = 59/257 (22%), Positives = 108/257 (41%), Gaps = 34/257 (13%)
Query: 12 YQVRKE-LEARISGLEDEN----AELFAENEKLALGTSELKDANNQLRQKNDKLFTTKEN 66
Y+ RK L+ R+S LE A L A+ +L LG D + + +KL + E+
Sbjct: 185 YERRKGILDTRLSELEKNGGAALAVLDAQQARL-LGQQTRND--RAISEARNKLSSVTES 241
Query: 67 LTQEKTELTEKNKVLTTEKGNLDNQLNASQKQV---QALEQSQQVLENEKVELTNKITDL 123
L + LT + LT +K D + S ++ + S V + + T KIT
Sbjct: 242 LNTARNALTRAEQQLTQQKNTPDGKTIVSPEKFPGRSSTNDSIVVSGDPRFAGTIKITTS 301
Query: 124 S----KEKENLTKANTELKTENDKLNHQVIALTKEQDSLKQE-----------RAQLQDA 168
+ + N +++ L + + LN + +T++ + K+ R +L DA
Sbjct: 302 AVIDNRANLNYLLSHSGLDYKRNILNDRNPVVTEDVEGDKKIYNAEVAEWDKLRQRLLDA 361
Query: 169 HGFLE--ELCANLEKDNQHLTDKLKKLESAQKNLENSNDQLLQAIENIAEEKTELEREIA 226
+ E N ++N L + QK+ ++ + LL+ ENI + + + ++IA
Sbjct: 362 RNKITSAESAVNSARNN------LSARTNEQKHANDALNALLKEKENIRNQLSGINQKIA 415
Query: 227 RLKSLEATDKSELDLQN 243
K + K+ D N
Sbjct: 416 EEKRKQDELKATKDAIN 432
Score = 31.6 bits (70), Expect = 0.11
Identities = 31/157 (19%), Positives = 66/157 (41%), Gaps = 21/157 (13%)
Query: 90 NQLNASQKQVQALEQSQQVLENEKVELTNKITDLSKEKENLTKANTELKTENDKLNHQVI 149
N++ +++ V + + NE+ + + L KEKEN ++ + +N ++
Sbjct: 363 NKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKEN-------IRNQLSGINQKIA 415
Query: 150 ALTKEQDSLKQERAQLQDAHGFLEELCANL---------EKDNQHLTDKLKKLESAQKNL 200
++QD LK + + FL+ + E Q K++ +E A K
Sbjct: 416 EEKRKQDELKATKDAINFTTEFLKSVSEKYGAKAEQLAREMAGQAKGKKIRNVEEALKTY 475
Query: 201 ENSNDQLLQAIENIAEEKTELEREIARLKSLEATDKS 237
E + + I A+++ + A L+S++ +D S
Sbjct: 476 EKYRADINKKIN--AKDRAAI---AAALESVKLSDIS 507
>pdb|1DN1|B Chain B, Crystal Structure Of The Neuronal-Sec1SYNTAXIN 1A COMPLEX
Length = 267
Score = 33.9 bits (76), Expect = 0.022
Identities = 25/108 (23%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 136 ELKTENDKLNHQVIALTKEQDSLKQER-AQLQDAHGFLEELCANLEK------------- 181
EL+T D + + +T ++D E Q+++ GF++++ N+E+
Sbjct: 7 ELRTAKDSDDDDDVTVTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPN 66
Query: 182 DNQHLTDKLKKLESAQKNLENSNDQLLQAIENIAEEKTELEREIARLK 229
++ ++L++L S K N L++IE E++ L R A L+
Sbjct: 67 PDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLR 114
>pdb|1EQ1|A Chain A, Nmr Structure Of An Exchangeable Apolipoprotein-Manduca
Sexta Apolipophorin-Iii
Length = 166
Score = 33.1 bits (74), Expect = 0.037
Identities = 27/134 (20%), Positives = 57/134 (42%), Gaps = 11/134 (8%)
Query: 59 KLFTTKENLTQEKTELTEKNKVLTTEKGNLDNQLNASQKQVQALEQSQQVLENEKVELTN 118
K F+ + N + NK L ++ QL+A +Q E +E
Sbjct: 21 KTFSEQFNSLVNSKNTQDFNKALKDGSDSVLQQLSAFSSSLQGAISDANGKAKEALEQAR 80
Query: 119 KITDLSKEKENLTKANTELKTENDKLNHQVIALTKEQDSLKQERAQLQDAHGFLEELCAN 178
+ ++ K E L KA+ +++ E + ++ A + +Q++ +E+ +N
Sbjct: 81 Q--NVEKTAEELRKAHPDVEKEANAFKDKLQAAVQ---------TTVQESQKLAKEVASN 129
Query: 179 LEKDNQHLTDKLKK 192
+E+ N+ L K+K+
Sbjct: 130 MEETNKKLAPKIKQ 143
>pdb|1M1J|C Chain C, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
pdb|1M1J|F Chain F, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
Length = 409
Score = 32.3 bits (72), Expect = 0.063
Identities = 19/75 (25%), Positives = 34/75 (45%)
Query: 64 KENLTQEKTELTEKNKVLTTEKGNLDNQLNASQKQVQALEQSQQVLENEKVELTNKITDL 123
K+ L Q +LT+K+K + E +N + A + +Q L + N+ +L KI L
Sbjct: 72 KQTLPQSIEQLTQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQL 131
Query: 124 SKEKENLTKANTELK 138
+ K E++
Sbjct: 132 ESHCQEPCKDTAEIQ 146
>pdb|1EI3|C Chain C, Crystal Structure Of Native Chicken Fibrinogen
pdb|1EI3|F Chain F, Crystal Structure Of Native Chicken Fibrinogen
Length = 409
Score = 32.3 bits (72), Expect = 0.063
Identities = 19/75 (25%), Positives = 34/75 (45%)
Query: 64 KENLTQEKTELTEKNKVLTTEKGNLDNQLNASQKQVQALEQSQQVLENEKVELTNKITDL 123
K+ L Q +LT+K+K + E +N + A + +Q L + N+ +L KI L
Sbjct: 72 KQTLPQSIEQLTQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQL 131
Query: 124 SKEKENLTKANTELK 138
+ K E++
Sbjct: 132 ESHCQEPCKDTAEIQ 146
>pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta
pdb|1JAD|B Chain B, C-Terminal Domain Of Turkey Plc-Beta
Length = 251
Score = 31.6 bits (70), Expect = 0.11
Identities = 42/195 (21%), Positives = 89/195 (45%), Gaps = 33/195 (16%)
Query: 53 LRQKNDKLFTTKENLTQEKTELTEKNKVLTTEK---GNLDNQLNASQKQVQAL------- 102
L+++ +L + ++ + EL +K VL E LD+Q+ +++++
Sbjct: 34 LKKQEKELKELERKGSKRREELLQKYSVLFLEPVYPRGLDSQVVELKERLEXELIHLGEE 93
Query: 103 --EQSQQVLENEKVELTNKITDLSKEKE----NLTKANTE-------LKTENDKLNHQVI 149
+ ++ E E T KIT+L++EK+ K ++E K E +L+ +
Sbjct: 94 YHDGIRRRKEQHATEQTAKITELAREKQIAELKALKESSESNIKDIKKKLEAKRLDRIQV 153
Query: 150 ALTKEQDSLKQERAQLQDAHGFLEELCANLEKDNQHLTDKLKKLESAQKNLENSNDQLLQ 209
D QER + + + ++E+ ++ LT+K + Q+ LE + L+
Sbjct: 154 XXRSTSDKAAQERLKKEINNSHIQEVVQTIKL----LTEKTARY---QQKLEEKQAENLR 206
Query: 210 AIENIAEEKTELERE 224
AI+ E++ +L++E
Sbjct: 207 AIQ---EKEGQLQQE 218
>pdb|1L8D|A Chain A, Rad50 Coiled-Coil Zn Hook
pdb|1L8D|B Chain B, Rad50 Coiled-Coil Zn Hook
Length = 112
Score = 31.6 bits (70), Expect = 0.11
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 96 QKQVQALEQSQQVLENEKVELTNKITDLSKEKENLTKANTELKTENDKLNHQVIALTKE- 154
+K ++ LE + +E E+ E+T +I +L + +L A ELK K LT E
Sbjct: 2 KKLLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEH 61
Query: 155 -QDSLKQERAQLQDAHGFLEELC---ANLEKDNQHLTDKLKKL 193
++ L + L ++ L +L + LE++ + + ++K+L
Sbjct: 62 REELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIKRL 104
Score = 28.5 bits (62), Expect = 0.91
Identities = 23/101 (22%), Positives = 45/101 (43%), Gaps = 5/101 (4%)
Query: 16 KELEARISGLEDENAELFAENEKLALGTSELKDANNQLRQKNDKLFTTKENLTQEKTELT 75
+ELE + + +E+E E+ +L +LK A +L++ K LT E E
Sbjct: 6 EELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHRE-- 63
Query: 76 EKNKVLTTEKGNLDNQLNASQKQVQALEQSQQVLENEKVEL 116
++L+ +L+N N K + + ++ L +E+
Sbjct: 64 ---ELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEI 101
>pdb|1KQL|A Chain A, Crystal Structure Of The C-Terminal Region Of Striated
Muscle Alpha-Tropomyosin At 2.7 Angstrom Resolution
pdb|1KQL|B Chain B, Crystal Structure Of The C-Terminal Region Of Striated
Muscle Alpha-Tropomyosin At 2.7 Angstrom Resolution
Length = 56
Score = 30.8 bits (68), Expect = 0.18
Identities = 15/46 (32%), Positives = 25/46 (53%)
Query: 208 LQAIENIAEEKTELEREIARLKSLEATDKSELDLQNCRFKSAIEDL 253
+ +E + + LE E+ARLK L + EL Q ++K+ E+L
Sbjct: 1 MDKVEELLSKNYHLENEVARLKKLVDDLEDELYAQKLKYKAISEEL 46
>pdb|1EK9|A Chain A, 2.1a X-Ray Structure Of Tolc: An Integral Outer Membrane
Protein And Efflux Pump Component From Escherichia Coli
pdb|1EK9|B Chain B, 2.1a X-Ray Structure Of Tolc: An Integral Outer Membrane
Protein And Efflux Pump Component From Escherichia Coli
pdb|1EK9|C Chain C, 2.1a X-Ray Structure Of Tolc: An Integral Outer Membrane
Protein And Efflux Pump Component From Escherichia Coli
Length = 428
Score = 29.6 bits (65), Expect = 0.41
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 88 LDNQLNASQKQVQALEQSQQVLENEKVELTNKITDLSKEKENLTKANTELKTENDKLNHQ 147
L N+L A A+EQ +Q+ N EL ++ K + + L E +K N
Sbjct: 165 LANELTARNNLDNAVEQLRQITGNYYPELA--ALNVENFKTDKPQPVNALLKEAEKRNLS 222
Query: 148 VIALTKEQDSLKQERAQLQDAH 169
++ QD +++ Q QD H
Sbjct: 223 LLQARLSQDLAREQIRQAQDGH 244
>pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor
pdb|1J7N|A Chain A, Anthrax Toxin Lethal Factor
pdb|1JKY|A Chain A, Crystal Structure Of The Anthrax Lethal Factor (Lf): Wild-
Type Lf Complexed With The N-Terminal Sequence Of Mapkk2
Length = 776
Score = 29.3 bits (64), Expect = 0.54
Identities = 30/118 (25%), Positives = 58/118 (48%), Gaps = 13/118 (11%)
Query: 153 KEQDSLK-QERAQLQDAHGFLEELCANLEKDNQHLTDKLKKLESAQKNLENSNDQLLQAI 211
K+++ K +ER + Q+ H L+E+ ++ K + +KK E+A+K LE +L+
Sbjct: 18 KDENKRKDEERNKTQEEH--LKEIMKHIVKIEVKGEEAVKK-EAAEKLLEKVPSDVLEMY 74
Query: 212 ENIAEEKTELEREIARLKSLEATDKSELDLQNCRFKSAIEDLKRQNRKLEEENIALKE 269
+ I + ++ +I + SLEA + K I+D+ ++ L E + KE
Sbjct: 75 KAIGGKIYIVDGDITKHISLEALSED---------KKKIKDIYGKDALLHEHYVYAKE 123
>pdb|1EBF|A Chain A, Homoserine Dehydrogenase From S. Cerevisiae Complex With
Nad+
pdb|1EBF|B Chain B, Homoserine Dehydrogenase From S. Cerevisiae Complex With
Nad+
pdb|1EBU|A Chain A, Homoserine Dehydrogenase Complex With Nad Analogue And L-
Homoserine
pdb|1EBU|B Chain B, Homoserine Dehydrogenase Complex With Nad Analogue And L-
Homoserine
pdb|1EBU|C Chain C, Homoserine Dehydrogenase Complex With Nad Analogue And L-
Homoserine
pdb|1EBU|D Chain D, Homoserine Dehydrogenase Complex With Nad Analogue And L-
Homoserine
Length = 358
Score = 28.9 bits (63), Expect = 0.70
Identities = 21/61 (34%), Positives = 30/61 (48%), Gaps = 4/61 (6%)
Query: 21 RISGLEDENAELFAENEKLALGTSELKDANNQLRQKNDKLFTTKENLTQEKTELTEKNKV 80
RISG+E E+ F + +K A+ L +KL ++LTQ K E +NKV
Sbjct: 228 RISGVEVESPTSFPVQSLIPKPLESVKSADEFL----EKLSDYDKDLTQLKKEAATENKV 283
Query: 81 L 81
L
Sbjct: 284 L 284
>pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAT|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAS|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
Length = 622
Score = 28.9 bits (63), Expect = 0.70
Identities = 15/84 (17%), Positives = 42/84 (49%), Gaps = 4/84 (4%)
Query: 140 ENDKLNHQVIALTKEQDSLKQERAQLQDAHGFLEELCANLEKDNQHLTDKLKKLESAQKN 199
+ KL H + + ++ D K + ++ FL+EL N++ D+ + ++ + +Q
Sbjct: 3 QRQKLQHWIHSCLRKADKNKDNKMNFKELKDFLKEL--NIQVDDGYARKIFRECDHSQ-- 58
Query: 200 LENSNDQLLQAIENIAEEKTELER 223
++ D+ ++ + ++ E++R
Sbjct: 59 TDSLEDEEIETFYKMLTQRAEIDR 82
>pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJW|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With
Inositol-2-Methylene-1,2-Cyclic-Monophosphonate
pdb|2ISD|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|1DJG|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJY|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|1DJH|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJI|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJX|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJI|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|2ISD|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|1DJW|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With
Inositol-2-Methylene-1,2-Cyclic-Monophosphonate
pdb|1DJH|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJY|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
Length = 624
Score = 28.9 bits (63), Expect = 0.70
Identities = 15/84 (17%), Positives = 42/84 (49%), Gaps = 4/84 (4%)
Query: 140 ENDKLNHQVIALTKEQDSLKQERAQLQDAHGFLEELCANLEKDNQHLTDKLKKLESAQKN 199
+ KL H + + ++ D K + ++ FL+EL N++ D+ + ++ + +Q
Sbjct: 5 QRQKLQHWIHSCLRKADKNKDNKMNFKELKDFLKEL--NIQVDDGYARKIFRECDHSQ-- 60
Query: 200 LENSNDQLLQAIENIAEEKTELER 223
++ D+ ++ + ++ E++R
Sbjct: 61 TDSLEDEEIETFYKMLTQRAEIDR 84
>pdb|1FOS|G Chain G, Two Human C-Fos:c-Jun:dna Complexes
Length = 59
Score = 28.5 bits (62), Expect = 0.91
Identities = 18/55 (32%), Positives = 26/55 (46%), Gaps = 6/55 (10%)
Query: 76 EKNKVLTTEKGNLDNQLNASQKQVQALEQSQQVLENEKVELTNKITDLSKEKENL 130
E+NK+ + N +L L+ LE+EK L +I +L KEKE L
Sbjct: 6 ERNKMAAAKSRNRRRELT------DTLQAETDQLEDEKSALQTEIANLLKEKEKL 54
>pdb|1A02|F Chain F, Structure Of The Dna Binding Domains Of Nfat, Fos And Jun
Bound To Dna
Length = 56
Score = 28.5 bits (62), Expect = 0.91
Identities = 18/55 (32%), Positives = 26/55 (46%), Gaps = 6/55 (10%)
Query: 76 EKNKVLTTEKGNLDNQLNASQKQVQALEQSQQVLENEKVELTNKITDLSKEKENL 130
E+NK+ + N +L L+ LE+EK L +I +L KEKE L
Sbjct: 8 ERNKMAAAKSRNRRRELT------DTLQAETDQLEDEKSALQTEIANLLKEKEKL 56
>pdb|1FOS|E Chain E, Two Human C-Fos:c-Jun:dna Complexes
Length = 60
Score = 28.5 bits (62), Expect = 0.91
Identities = 18/55 (32%), Positives = 26/55 (46%), Gaps = 6/55 (10%)
Query: 76 EKNKVLTTEKGNLDNQLNASQKQVQALEQSQQVLENEKVELTNKITDLSKEKENL 130
E+NK+ + N +L L+ LE+EK L +I +L KEKE L
Sbjct: 7 ERNKMAAAKSRNRRRELT------DTLQAETDQLEDEKSALQTEIANLLKEKEKL 55
>pdb|1FXK|B Chain B, Crystal Structure Of Archaeal Prefoldin (Gimc)
Length = 109
Score = 28.1 bits (61), Expect = 1.2
Identities = 21/93 (22%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 73 ELTEKNKVLTTEKGNLDNQLNASQKQVQALEQSQQVLENEKVELTNKITDLSKEKENLTK 132
+L ++ + ++ +K ++ Q+N +QK ALE+ + ++ +V ++ + K+ LT+
Sbjct: 11 QLQQQAQAISVQKQTVEXQINETQK---ALEELSRAADDAEVYKSSGNILIRVAKDELTE 67
Query: 133 ANTELKTENDKLNHQVIALTKEQDSLKQERAQL 165
E K E +L + I +E+ K + Q+
Sbjct: 68 ELQE-KLETLQLREKTIERQEERVXKKLQEXQV 99
Score = 26.2 bits (56), Expect = 4.5
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 91 QLNASQKQVQALEQSQQVLENEKVELTNKITDLSKEKENLTKANTELKTENDKLNHQVIA 150
Q Q+Q QA+ +Q +E + I + K E L++A + + N I
Sbjct: 8 QFQQLQQQAQAISVQKQTVEXQ-------INETQKALEELSRAADDAEVYKSSGN---IL 57
Query: 151 LTKEQDSLKQERAQLQDAHGFLEELCANLEKDNQHLTDKLKKLESAQKNLENS 203
+ +D L +E LQ+ L+ +E+ + + KKL+ Q N++ +
Sbjct: 58 IRVAKDELTEE---LQEKLETLQLREKTIERQEERVX---KKLQEXQVNIQEA 104
>pdb|1E7T|A Chain A, Human Vimentin Coil 2b Fragment Linked To Gcn4 Leucine
Zipper
pdb|1GK6|A Chain A, Human Vimentin Coil 2b Fragment Linked To Gcn4 Leucine
Zipper (Z2b)
pdb|1E7T|B Chain B, Human Vimentin Coil 2b Fragment Linked To Gcn4 Leucine
Zipper
pdb|1GK6|B Chain B, Human Vimentin Coil 2b Fragment Linked To Gcn4 Leucine
Zipper (Z2b)
Length = 59
Score = 28.1 bits (61), Expect = 1.2
Identities = 16/56 (28%), Positives = 31/56 (54%)
Query: 184 QHLTDKLKKLESAQKNLENSNDQLLQAIENIAEEKTELEREIARLKSLEATDKSEL 239
+ L DK+++L S +LEN +L + + ++ K L+ EIA + L ++S +
Sbjct: 3 KQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLEGEESRI 58
>pdb|1FXK|A Chain A, Crystal Structure Of Archaeal Prefoldin (Gimc)
Length = 107
Score = 28.1 bits (61), Expect = 1.2
Identities = 21/93 (22%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 73 ELTEKNKVLTTEKGNLDNQLNASQKQVQALEQSQQVLENEKVELTNKITDLSKEKENLTK 132
+L ++ + ++ +K ++ Q+N +QK ALE+ + ++ +V ++ + K+ LT+
Sbjct: 12 QLQQQAQAISVQKQTVEXQINETQK---ALEELSRAADDAEVYKSSGNILIRVAKDELTE 68
Query: 133 ANTELKTENDKLNHQVIALTKEQDSLKQERAQL 165
E K E +L + I +E+ K + Q+
Sbjct: 69 ELQE-KLETLQLREKTIERQEERVXKKLQEXQV 100
Score = 26.2 bits (56), Expect = 4.5
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 91 QLNASQKQVQALEQSQQVLENEKVELTNKITDLSKEKENLTKANTELKTENDKLNHQVIA 150
Q Q+Q QA+ +Q +E + I + K E L++A + + N I
Sbjct: 9 QFQQLQQQAQAISVQKQTVEXQ-------INETQKALEELSRAADDAEVYKSSGN---IL 58
Query: 151 LTKEQDSLKQERAQLQDAHGFLEELCANLEKDNQHLTDKLKKLESAQKNLENS 203
+ +D L +E LQ+ L+ +E+ + + KKL+ Q N++ +
Sbjct: 59 IRVAKDELTEE---LQEKLETLQLREKTIERQEERVX---KKLQEXQVNIQEA 105
>pdb|1IC2|A Chain A, Deciphering The Design Of The Tropomyosin Molecule
pdb|1IC2|C Chain C, Deciphering The Design Of The Tropomyosin Molecule
pdb|1IC2|B Chain B, Deciphering The Design Of The Tropomyosin Molecule
pdb|1IC2|D Chain D, Deciphering The Design Of The Tropomyosin Molecule
Length = 81
Score = 27.7 bits (60), Expect = 1.6
Identities = 22/72 (30%), Positives = 39/72 (53%), Gaps = 3/72 (4%)
Query: 191 KKLESAQKNLENSNDQLLQAI--ENIAEEKT-ELEREIARLKSLEATDKSELDLQNCRFK 247
KK++ + + EN+ D+ QA + AEE++ +LE E+ L+ + ELD + K
Sbjct: 6 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLK 65
Query: 248 SAIEDLKRQNRK 259
A E L+ ++K
Sbjct: 66 DAQEKLELADKK 77
>pdb|1FOS|F Chain F, Two Human C-Fos:c-Jun:dna Complexes
Length = 57
Score = 27.3 bits (59), Expect = 2.0
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 15 RKELEARISGLEDENAELFAENEKLALGTSELKDANNQLRQK 56
RK RI+ LE++ L A+N +LA + L++ QL+QK
Sbjct: 14 RKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 55
>pdb|1H6K|C Chain C, Nuclear Cap Binding Complex
pdb|1H6K|B Chain B, Nuclear Cap Binding Complex
pdb|1H6K|A Chain A, Nuclear Cap Binding Complex
Length = 757
Score = 27.3 bits (59), Expect = 2.0
Identities = 15/48 (31%), Positives = 26/48 (53%)
Query: 173 EELCANLEKDNQHLTDKLKKLESAQKNLENSNDQLLQAIENIAEEKTE 220
E L + + K N+H+ K+LE A++ L +D +L+ +EK E
Sbjct: 620 EILHSTIRKMNKHVLKIQKELEEAKEKLARQHDGVLEEQIERLQEKVE 667
>pdb|1DEQ|B Chain B, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|E Chain E, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|O Chain O, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|R Chain R, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
Length = 408
Score = 27.3 bits (59), Expect = 2.0
Identities = 24/121 (19%), Positives = 51/121 (41%), Gaps = 16/121 (13%)
Query: 106 QQVLENEKVELTNKITDLSKEKENLTKANTELKTENDKLNHQVIALTKEQDSLKQERAQL 165
Q L ++ + I DL +++++ ++ Q I L K K + Q+
Sbjct: 30 QDTLVRQERPIRKSIEDLRNTVDSVSRTSSS--------TFQYITLLKNM--WKGRQNQV 79
Query: 166 QDAHGFLEELCANLEKDNQHLTDKLKKLESAQKNLENSNDQLLQAIENIAEEKTELEREI 225
QD + E ++LEK ++ E+ + N+ L +EN+ + +LE ++
Sbjct: 80 QDNENVVNEYSSHLEKHQLYID------ETVKNNIPTKLRVLRSILENLRSKIQKLESDV 133
Query: 226 A 226
+
Sbjct: 134 S 134
>pdb|1FOS|H Chain H, Two Human C-Fos:c-Jun:dna Complexes
Length = 58
Score = 27.3 bits (59), Expect = 2.0
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 15 RKELEARISGLEDENAELFAENEKLALGTSELKDANNQLRQK 56
RK RI+ LE++ L A+N +LA + L++ QL+QK
Sbjct: 15 RKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 56
>pdb|1BR0|A Chain A, Three Dimensional Structure Of The N-Terminal Domain Of
Syntaxin 1a
Length = 120
Score = 27.3 bits (59), Expect = 2.0
Identities = 18/79 (22%), Positives = 38/79 (47%), Gaps = 13/79 (16%)
Query: 164 QLQDAHGFLEELCANLEK-------------DNQHLTDKLKKLESAQKNLENSNDQLLQA 210
Q+++ GF++++ N+E+ ++ ++L++L S K N L++
Sbjct: 10 QVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKS 69
Query: 211 IENIAEEKTELEREIARLK 229
IE E++ L R A L+
Sbjct: 70 IEQSIEQEEGLNRSSADLR 88
>pdb|1EZ3|A Chain A, Crystal Structure Of The Neuronal T-Snare Syntaxin-1a
pdb|1EZ3|B Chain B, Crystal Structure Of The Neuronal T-Snare Syntaxin-1a
pdb|1EZ3|C Chain C, Crystal Structure Of The Neuronal T-Snare Syntaxin-1a
Length = 127
Score = 27.3 bits (59), Expect = 2.0
Identities = 18/79 (22%), Positives = 38/79 (47%), Gaps = 13/79 (16%)
Query: 164 QLQDAHGFLEELCANLEK-------------DNQHLTDKLKKLESAQKNLENSNDQLLQA 210
Q+++ GF++++ N+E+ ++ ++L++L S K N L++
Sbjct: 13 QVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKS 72
Query: 211 IENIAEEKTELEREIARLK 229
IE E++ L R A L+
Sbjct: 73 IEQSIEQEEGLNRSSADLR 91
>pdb|1GPJ|A Chain A, Glutamyl-Trna Reductase From Methanopyrus Kandleri
Length = 404
Score = 27.3 bits (59), Expect = 2.0
Identities = 22/86 (25%), Positives = 43/86 (49%), Gaps = 5/86 (5%)
Query: 172 LEELCANLEKDNQHLTDKLKKLESAQKNLENSNDQLLQAIENIAEEKTELEREIARLKS- 230
+EE N+E D L+ + A++NLE ++ + + I EE + +E E+ +LK
Sbjct: 271 VEEGVENIEDVEVRTIDDLRVI--ARENLERRRKEIPKVEKLIEEELSTVEEELEKLKER 328
Query: 231 --LEATDKSELDLQNCRFKSAIEDLK 254
+ KS ++++ + A+ LK
Sbjct: 329 RLVADVAKSLHEIKDRELERALRRLK 354
>pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomerase I Dna Complex
Length = 563
Score = 26.9 bits (58), Expect = 2.7
Identities = 42/187 (22%), Positives = 74/187 (39%), Gaps = 30/187 (16%)
Query: 28 ENAELFAEN--------EKLALG--TSELKDANNQLRQKNDKLFTTKENLTQEKTELTEK 77
+N +LF EN ++L G L+D L K + + L Q+ ELT
Sbjct: 347 KNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAP 406
Query: 78 N-----KVLTTEKGNLDNQLNASQKQVQALEQSQQVLENEKVE--LTNKITDLSKEKENL 130
+ K+L+ + N + A+ + Q+ + E + N T + +KE L
Sbjct: 407 DENIPAKILSYNRAN----------RAVAILCNHQIAPPKTFEKSMMNLQTKIDAKKEQL 456
Query: 131 TKANTELKTENDKLNHQVIALTKEQDSLKQERAQLQDAHGFLEELCANLEKDNQHL---T 187
A +LK+ A TK+ K++ Q + E+ A ++N+ + T
Sbjct: 457 ADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGT 516
Query: 188 DKLKKLE 194
KL L+
Sbjct: 517 SKLNFLD 523
>pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex
With A 22 Base Pair Dna Duplex Containing An 8-Oxog
Lesion
Length = 564
Score = 26.6 bits (57), Expect = 3.5
Identities = 42/187 (22%), Positives = 73/187 (38%), Gaps = 30/187 (16%)
Query: 28 ENAELFAEN--------EKLALG--TSELKDANNQLRQKNDKLFTTKENLTQEKTELTEK 77
+N +LF EN ++L G L+D L K + + L Q+ ELT
Sbjct: 348 KNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAP 407
Query: 78 N-----KVLTTEKGNLDNQL--NASQKQVQALEQSQQVLENEKVELTNKITDLSKEKENL 130
+ K+L+ + N + N + + E+S L+ T + +KE L
Sbjct: 408 DENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQ----------TKIDAKKEQL 457
Query: 131 TKANTELKTENDKLNHQVIALTKEQDSLKQERAQLQDAHGFLEELCANLEKDNQHL---T 187
A +LK+ A TK+ K++ Q + E+ A ++N+ + T
Sbjct: 458 ADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGT 517
Query: 188 DKLKKLE 194
KL L+
Sbjct: 518 SKLNFLD 524
>pdb|1ZIK|A Chain A, Gcn4-Leucine Zipper Core Mutant Asn16lys In The Dimeric
State
pdb|1ZIK|B Chain B, Gcn4-Leucine Zipper Core Mutant Asn16lys In The Dimeric
State
Length = 34
Score = 26.6 bits (57), Expect = 3.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 206 QLLQAIENIAEEKTELEREIARLKSL 231
QL +E + +K LE E+ARLK L
Sbjct: 5 QLEDKVEELLSKKYHLENEVARLKKL 30
>pdb|1A36|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex
With A 22 Base Pair Dna Duplex
Length = 592
Score = 26.6 bits (57), Expect = 3.5
Identities = 42/187 (22%), Positives = 73/187 (38%), Gaps = 30/187 (16%)
Query: 28 ENAELFAEN--------EKLALG--TSELKDANNQLRQKNDKLFTTKENLTQEKTELTEK 77
+N +LF EN ++L G L+D L K + + L Q+ ELT
Sbjct: 376 KNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAP 435
Query: 78 N-----KVLTTEKGNLDNQL--NASQKQVQALEQSQQVLENEKVELTNKITDLSKEKENL 130
+ K+L+ + N + N + + E+S L+ T + +KE L
Sbjct: 436 DENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQ----------TKIDAKKEQL 485
Query: 131 TKANTELKTENDKLNHQVIALTKEQDSLKQERAQLQDAHGFLEELCANLEKDNQHL---T 187
A +LK+ A TK+ K++ Q + E+ A ++N+ + T
Sbjct: 486 ADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGT 545
Query: 188 DKLKKLE 194
KL L+
Sbjct: 546 SKLNFLD 552
>pdb|1M1J|A Chain A, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
pdb|1M1J|D Chain D, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
Length = 491
Score = 26.6 bits (57), Expect = 3.5
Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 19/103 (18%)
Query: 183 NQHLTDKLKKLESAQKNLENSNDQLLQAI--------------ENIAEEKTELEREIARL 228
+Q + + ++L +Q + SN +++ I EN TEL R I L
Sbjct: 64 SQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTL 123
Query: 229 KSLEATDKSELDLQNCRFKSAIEDLKRQNRKLEEENIALKERA 271
K AT + + + + ++KR E +I +K RA
Sbjct: 124 KQRVATQVNRIKALQNSIQEQVVEMKRL-----EVDIDIKIRA 161
>pdb|1EI3|A Chain A, Crystal Structure Of Native Chicken Fibrinogen
pdb|1EI3|D Chain D, Crystal Structure Of Native Chicken Fibrinogen
Length = 491
Score = 26.6 bits (57), Expect = 3.5
Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 19/103 (18%)
Query: 183 NQHLTDKLKKLESAQKNLENSNDQLLQAI--------------ENIAEEKTELEREIARL 228
+Q + + ++L +Q + SN +++ I EN TEL R I L
Sbjct: 64 SQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTL 123
Query: 229 KSLEATDKSELDLQNCRFKSAIEDLKRQNRKLEEENIALKERA 271
K AT + + + + ++KR E +I +K RA
Sbjct: 124 KQRVATQVNRIKALQNSIQEQVVEMKRL-----EVDIDIKIRA 161
>pdb|1L8Y|A Chain A, Solution Structure Of Hmg Box 5 In Human Upstream Binding
Factor
pdb|1L8Z|A Chain A, Solution Structure Of Hmg Box 5 In Human Upstream Binding
Factor
Length = 91
Score = 26.6 bits (57), Expect = 3.5
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 190 LKKLESAQKNLENSNDQLLQAIENIAEEKTELEREIARLKSLEATDKSELDLQN 243
LK +E N+E + L I+ AE++ ERE++ +++ A S L++
Sbjct: 35 LKAMEMTWNNMEKK--EKLMWIKKAAEDQKRYERELSEMRAPPAATNSSKKLEH 86
>pdb|1GL2|B Chain B, Crystal Structure Of An Endosomal Snare Core Complex
Length = 65
Score = 25.8 bits (55), Expect = 5.9
Identities = 12/58 (20%), Positives = 30/58 (51%)
Query: 153 KEQDSLKQERAQLQDAHGFLEELCANLEKDNQHLTDKLKKLESAQKNLENSNDQLLQA 210
+ + S++Q A + D + ++L + + + +ESA+ +++ +N QL +A
Sbjct: 6 ERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRA 63
>pdb|1AN2|A Chain A, Recognition By Max Of Its Cognate Dna
pdb|1AN2|C Chain C, Recognition By Max Of Its Cognate Dna
Length = 86
Score = 25.8 bits (55), Expect = 5.9
Identities = 20/89 (22%), Positives = 34/89 (37%), Gaps = 18/89 (20%)
Query: 181 KDNQHLTDKLKKLESAQKNLENSNDQLLQAIENIAEEKTELEREIARLKSLEATDKSELD 240
K H+ D L + +L+ Q ++ E + R+
Sbjct: 13 KRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRK---------------- 56
Query: 241 LQNCRFKSAIEDLKRQNRKLEEENIALKE 269
N + I+DLKRQN LE++ AL++
Sbjct: 57 --NHTHQQDIDDLKRQNALLEQQVRALEK 83
>pdb|1JUN|A Chain A, Nmr Study Of C-Jun Homodimer
pdb|1JUN|B Chain B, Nmr Study Of C-Jun Homodimer
Length = 44
Score = 25.8 bits (55), Expect = 5.9
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 21 RISGLEDENAELFAENEKLALGTSELKDANNQLRQK 56
RI+ LE++ L A+N +LA + L++ QL+QK
Sbjct: 5 RIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 40
>pdb|1HLO|A Chain A, The Crystal Structure Of An Intact Human Max-Dna Complex:
New Insights Into Mechanisms Of Transcriptional Control
pdb|1HLO|B Chain B, The Crystal Structure Of An Intact Human Max-Dna Complex:
New Insights Into Mechanisms Of Transcriptional Control
Length = 150
Score = 25.8 bits (55), Expect = 5.9
Identities = 20/89 (22%), Positives = 34/89 (37%), Gaps = 18/89 (20%)
Query: 181 KDNQHLTDKLKKLESAQKNLENSNDQLLQAIENIAEEKTELEREIARLKSLEATDKSELD 240
K H+ D L + +L+ Q ++ E + R+
Sbjct: 24 KRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRK---------------- 67
Query: 241 LQNCRFKSAIEDLKRQNRKLEEENIALKE 269
N + I+DLKRQN LE++ AL++
Sbjct: 68 --NHTHQQDIDDLKRQNALLEQQVRALEK 94
>pdb|1BJT| Topoisomerase Ii Residues 409 - 1201
pdb|1BGW| Topoisomerase Residues 410 - 1202,
Length = 793
Score = 25.4 bits (54), Expect = 7.7
Identities = 41/180 (22%), Positives = 70/180 (38%), Gaps = 30/180 (16%)
Query: 105 SQQVLENEKVELTNKITDLSKEKE-----NLTKANTELKTENDKLNHQVIALTKEQDSLK 159
+ Q+L+N +++ KI L K+ +L + + T+ D + L + L+
Sbjct: 78 ADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKGLII--NFLE 135
Query: 160 QERAQLQDAHGFLEELCANLEKD-------------NQHLTDKLKKLES-----AQKNLE 201
L D GFL E + K N +K ++ ES QK +
Sbjct: 136 SSFLGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHKFTWKQKYYK 195
Query: 202 NSNDQLLQAIENIAEEKTELEREIARLKSLEATDKSELDLQNCRFKSAIEDLKRQNRKLE 261
L Q + E + L+R + SL+ DK +DL + K+ +D K R+ E
Sbjct: 196 GLGTSLAQEVR---EYFSNLDRHLKIFHSLQGNDKDYIDLAFSKKKA--DDRKEWLRQYE 250
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.304 0.124 0.313
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,349,378
Number of Sequences: 13198
Number of extensions: 50837
Number of successful extensions: 264
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 176
Number of HSP's gapped (non-prelim): 78
length of query: 284
length of database: 2,899,336
effective HSP length: 87
effective length of query: 197
effective length of database: 1,751,110
effective search space: 344968670
effective search space used: 344968670
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 54 (25.4 bits)