BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645204|ref|NP_207374.1| hypothetical protein
[Helicobacter pylori 26695]
(184 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1G2N|A Chain A, Crystal Structure Of The Ligand Binding... 27 1.8
pdb|1POV|3 Chain 3, Mol_id: 1; Molecule: Poliovirus Native ... 26 3.1
pdb|1HXS|3 Chain 3, Crystal Structure Of Mahoney Strain Of ... 26 3.1
pdb|1DGI|3 Chain 3, Cryo-Em Structure Of Human Poliovirus(S... 26 3.1
pdb|1EAH|3 Chain 3, Pv2l Complexed With Antiviral Agent Sch... 26 3.1
pdb|1PVC|3 Chain 3, Mol_id: 1; Molecule: Poliovirus Type 3,... 25 4.1
pdb|1VBB|3 Chain 3, Poliovirus (Type 3, Sabin Strain) (P3SA... 25 4.1
pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-Ran ... 24 9.1
>pdb|1G2N|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Ultraspiracle Protein Usp, The Ortholog Of Rxrs In
Insects
Length = 264
Score = 26.6 bits (57), Expect = 1.8
Identities = 13/44 (29%), Positives = 27/44 (60%), Gaps = 2/44 (4%)
Query: 75 FSCRLLQKPPLET--LQSYSVMLFFNLLLLTDVLGFLPFSIYHH 116
F+ LL+ P L + L+S+ + FF+L+ T + G++ ++ +H
Sbjct: 212 FAALLLRLPALRSISLKSFEHLFFFHLVADTSIAGYIRDALRNH 255
>pdb|1POV|3 Chain 3, Mol_id: 1; Molecule: Poliovirus Native Empty Capsid (Type
1); Chain: 0, 1, 3; Heterogen: Ligand Unidentified
Experimentally But Presumed To Be A Lipid And Modeled As
Sphingosine
pdb|2PLV|3 Chain 3, Poliovirus (Type 1, Mahoney Strain)
pdb|1AL2|3 Chain 3, P1MAHONEY POLIOVIRUS, SINGLE SITE MUTANT V1160I
pdb|1AR6|3 Chain 3, P1MAHONEY POLIOVIRUS, DOUBLE MUTANT V1160I +P1095S
pdb|1AR7|3 Chain 3, P1MAHONEY POLIOVIRUS, DOUBLE MUTANT P1095S + H2142Y
pdb|1AR8|3 Chain 3, P1MAHONEY POLIOVIRUS, MUTANT P1095S
pdb|1AR9|3 Chain 3, P1MAHONEY POLIOVIRUS, SINGLE SITE MUTANT H2142Y
pdb|1ASJ|3 Chain 3, P1MAHONEY POLIOVIRUS, AT CRYOGENIC TEMPERATURE
pdb|1PO1|3 Chain 3, Poliovirus (Type 1, Mahoney) In Complex With R80633, An
Inhibitor Of Viral Replication
pdb|1PO2|3 Chain 3, Poliovirus (Type 1, Mahoney) In Complex With R77975, An
Inhibitor Of Viral Replication
pdb|1VBD|3 Chain 3, Poliovirus (Type 1, Mahoney Strain) Complexed With R78206
Length = 238
Score = 25.8 bits (55), Expect = 3.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 114 YHHFMASLIFSALFCSSLFLSSPLL 138
Y H+ SL F+ LFC S+ + LL
Sbjct: 107 YTHWAGSLKFTFLFCGSMMATGKLL 131
>pdb|1HXS|3 Chain 3, Crystal Structure Of Mahoney Strain Of Poliovirus At 2.2a
Resolution
Length = 237
Score = 25.8 bits (55), Expect = 3.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 114 YHHFMASLIFSALFCSSLFLSSPLL 138
Y H+ SL F+ LFC S+ + LL
Sbjct: 107 YTHWAGSLKFTFLFCGSMMATGKLL 131
>pdb|1DGI|3 Chain 3, Cryo-Em Structure Of Human Poliovirus(Serotype 1)complexed
With Three Domain Cd155,
Length = 235
Score = 25.8 bits (55), Expect = 3.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 114 YHHFMASLIFSALFCSSLFLSSPLL 138
Y H+ SL F+ LFC S+ + LL
Sbjct: 107 YTHWAGSLKFTFLFCGSMMATGKLL 131
>pdb|1EAH|3 Chain 3, Pv2l Complexed With Antiviral Agent Sch48973
Length = 238
Score = 25.8 bits (55), Expect = 3.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 114 YHHFMASLIFSALFCSSLFLSSPLL 138
Y H+ SL F+ LFC S+ + LL
Sbjct: 107 YTHWAGSLKFTFLFCGSMMATGKLL 131
>pdb|1PVC|3 Chain 3, Mol_id: 1; Molecule: Poliovirus Type 3, Sabin Strain;
Chain: 0, 1, 2, 3, 4; Other_details: P3SABIN
P3LEON12A(1)B
pdb|1PIV|3 Chain 3, Poliovirus (Type 3, Sabin Strain) (P3SABIN; P3LEON12A(1)B)
COMPLEXED WITH DISOXARIL (WIN 51711)
Length = 238
Score = 25.4 bits (54), Expect = 4.1
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 101 LLTDVLGFLPFSIYHHFMASLIFSALFCSSLFLSSPLL 138
+L +VL + Y H+ SL F+ LFC S+ + +L
Sbjct: 99 MLGEVLNY-----YTHWAGSLKFTFLFCGSMMATGKIL 131
>pdb|1VBB|3 Chain 3, Poliovirus (Type 3, Sabin Strain) (P3SABIN, P3LEON12A(1)B)
COMPLEXED WITH R80633
pdb|1VBC|3 Chain 3, Poliovirus (Type 3, Sabin Strain) (P3SABIN, P3LEON12A(1)B)
COMPLEXED WITH R77975
pdb|1VBE|3 Chain 3, Poliovirus (Type 3, Sabin Strain, Mutant 242-H2) Complexed
With R78206
pdb|1VBA|3 Chain 3, Poliovirus (Type 3, Sabin Strain) (P3SABIN, P3LEON12A(1)B)
COMPLEXED WITH R78206
Length = 235
Score = 25.4 bits (54), Expect = 4.1
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 101 LLTDVLGFLPFSIYHHFMASLIFSALFCSSLFLSSPLL 138
+L +VL + Y H+ SL F+ LFC S+ + +L
Sbjct: 99 MLGEVLNY-----YTHWAGSLKFTFLFCGSMMATGKIL 131
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-Ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 24.3 bits (51), Expect = 9.1
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 44 LKDSLSLNEFLSSFTAPLSPFSCLLILAYALFSCRLLQKPPLETLQ-SYSVMLFFNLLLL 102
L + + E S A L +C ++ Y + L+TL ++S NLL+L
Sbjct: 490 LDSNKRVQEAACSAFATLEEEACTELVPYLAYI--------LDTLVFAFSKYQHKNLLIL 541
Query: 103 TDVLGFLPFSIYHH 116
D +G L S+ HH
Sbjct: 542 YDAIGTLADSVGHH 555
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.335 0.147 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 798,896
Number of Sequences: 13198
Number of extensions: 23452
Number of successful extensions: 79
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 73
Number of HSP's gapped (non-prelim): 8
length of query: 184
length of database: 2,899,336
effective HSP length: 83
effective length of query: 101
effective length of database: 1,803,902
effective search space: 182194102
effective search space used: 182194102
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 51 (24.3 bits)