BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645205|ref|NP_207375.1| hypothetical protein
[Helicobacter pylori 26695]
(372 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1HXK|A Chain A, Golgi Alpha-Mannosidase Ii In Complex W... 28 1.7
pdb|1K8Q|A Chain A, Crystal Structure Of Dog Gastric Lipase... 28 2.2
pdb|1QJ2|H Chain H, Co Dehydrogenase From Oligotropha Carbo... 27 4.9
pdb|1QJ2|B Chain B, Co Dehydrogenase From Oligotropha Carbo... 27 4.9
pdb|1K9O|I Chain I, Crystal Structure Of Michaelis Serpin-T... 26 6.4
pdb|1JJI|A Chain A, The Crystal Structure Of A Hyper-Thermo... 26 6.4
pdb|1SEK| The Structure Of Active Serpin K From Manduca S... 26 6.4
pdb|1TRB| Thioredoxin Reductase (E.C.1.6.4.5) Mutant With... 26 8.3
pdb|1TDE| Thioredoxin Reductase (E.C.1.6.4.5) (Wild Type) 26 8.3
pdb|1F6M|A Chain A, Crystal Structure Of A Complex Between ... 26 8.3
pdb|1CL0|A Chain A, Crystal Structure Of Reduced Thioredoxi... 26 8.3
pdb|1TDF| Thioredoxin Reductase (E.C.1.6.4.5) Mutant With... 26 8.3
>pdb|1HXK|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With
Deoxymannojirimicin
pdb|1HWW|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Swainsonine
Length = 1015
Score = 28.1 bits (61), Expect = 1.7
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 19/92 (20%)
Query: 111 ILTKEELSHYSHEYIKKLGNPLLFLHDDKILLFVVGVSMGGWATSKIYQLESALEPIRFK 170
I T EE +Y H+ L N L LHD+ + F+ WA + +
Sbjct: 66 IQTFEE--YYQHDTKHILSNALRHLHDNPEMKFI-------WAEISYFA----------R 106
Query: 171 FARKLSLSPFLNLSHLIRNKPLSTTDGGFMLP 202
F L + L + +++N L GG+++P
Sbjct: 107 FYHDLGENKKLQMKSIVKNGQLEFVTGGWVMP 138
>pdb|1K8Q|A Chain A, Crystal Structure Of Dog Gastric Lipase In Complex With A
Phosphonate Inhibitor
pdb|1K8Q|B Chain B, Crystal Structure Of Dog Gastric Lipase In Complex With A
Phosphonate Inhibitor
Length = 377
Score = 27.7 bits (60), Expect = 2.2
Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Query: 251 FRNHSFKDSLMLETCKTPTAWQKPMLTNLKNLNDALNLINLNE---ELYLIHNPSDSSLR 307
+ +H F L E C T + +N + + +NLN ++YL HNP+ +S++
Sbjct: 213 YPHHFFDQFLATEVCSRETV--DLLCSNALFIICGFDTMNLNMSRLDVYLSHNPAGTSVQ 270
Query: 308 RKELWLSKLENSNSFKTLKVLDKANEVSYPSYSLNPHF 345
W S+ S F+ + + S+ P++
Sbjct: 271 NVLHW-SQAVKSGKFQAFDWGSPVQNMMHYHQSMPPYY 307
>pdb|1QJ2|H Chain H, Co Dehydrogenase From Oligotropha Carboxidovorans
Length = 809
Score = 26.6 bits (57), Expect = 4.9
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 231 ALNHQLQPSLTPFKDCAIMAFRNHSFKDSLMLETCKTPTAW 271
A ++ + L KD I+A R H D + C P+ W
Sbjct: 311 ARDYHMTTELAATKDGKILAMRCHVLADHGAFDACADPSKW 351
>pdb|1QJ2|B Chain B, Co Dehydrogenase From Oligotropha Carboxidovorans
Length = 809
Score = 26.6 bits (57), Expect = 4.9
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 231 ALNHQLQPSLTPFKDCAIMAFRNHSFKDSLMLETCKTPTAW 271
A ++ + L KD I+A R H D + C P+ W
Sbjct: 311 ARDYHMTTELAATKDGKILAMRCHVLADHGAFDACADPSKW 351
>pdb|1K9O|I Chain I, Crystal Structure Of Michaelis Serpin-Trypsin Complex
Length = 378
Score = 26.2 bits (56), Expect = 6.4
Identities = 12/52 (23%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 69 ISLPNDNLLSAYFSGTKEGAR-----DVKISANLFDSKTNRWSEAFIILTKE 115
++LPNDN+ F+ G R D+K+++ ++ +K ++ F ++++
Sbjct: 65 LALPNDNVTKDVFADLNRGVRAVKGVDLKMASKIYVAKGLELNDDFAAVSRD 116
>pdb|1JJI|A Chain A, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
pdb|1JJI|B Chain B, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
pdb|1JJI|C Chain C, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
pdb|1JJI|D Chain D, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
Length = 311
Score = 26.2 bits (56), Expect = 6.4
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 202 PLYHELATQYPLLLKFDQQNNPRE 225
P+Y++LA + L KFDQ ++ RE
Sbjct: 8 PVYYQLAEYFDSLPKFDQFSSARE 31
>pdb|1SEK| The Structure Of Active Serpin K From Manduca Sexta And A Model
For Serpin-Protease Complex Formation
Length = 378
Score = 26.2 bits (56), Expect = 6.4
Identities = 12/52 (23%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 69 ISLPNDNLLSAYFSGTKEGAR-----DVKISANLFDSKTNRWSEAFIILTKE 115
++LPNDN+ F+ G R D+K+++ ++ +K ++ F ++++
Sbjct: 65 LALPNDNVTKDVFADLNRGVRAVKGVDLKMASKIYVAKGLELNDDFAAVSRD 116
>pdb|1TRB| Thioredoxin Reductase (E.C.1.6.4.5) Mutant With Cys 138 Replaced
By Ser (C138s)
Length = 320
Score = 25.8 bits (55), Expect = 8.3
Identities = 24/94 (25%), Positives = 39/94 (40%), Gaps = 6/94 (6%)
Query: 142 LFVVGVSMGGWATSKIYQLESALEPIRFKFARKLSLSPFLNLSHLIRNKPLSTTD--GGF 199
L ++G G+ T+ +Y + L+P+ K L + + N P D G
Sbjct: 8 LLILGSGPAGY-TAAVYAARANLQPVLITGMEK---GGQLTTTTEVENWPGDPNDLTGPL 63
Query: 200 MLPLYHELATQYPLLLKFDQQNNPRELLRPNALN 233
++ HE AT++ + FD N RP LN
Sbjct: 64 LMERMHEHATKFETEIIFDHINKVDLQNRPFRLN 97
>pdb|1TDE| Thioredoxin Reductase (E.C.1.6.4.5) (Wild Type)
Length = 316
Score = 25.8 bits (55), Expect = 8.3
Identities = 24/94 (25%), Positives = 39/94 (40%), Gaps = 6/94 (6%)
Query: 142 LFVVGVSMGGWATSKIYQLESALEPIRFKFARKLSLSPFLNLSHLIRNKPLSTTD--GGF 199
L ++G G+ T+ +Y + L+P+ K L + + N P D G
Sbjct: 8 LLILGSGPAGY-TAAVYAARANLQPVLITGMEK---GGQLTTTTEVENWPGDPNDLTGPL 63
Query: 200 MLPLYHELATQYPLLLKFDQQNNPRELLRPNALN 233
++ HE AT++ + FD N RP LN
Sbjct: 64 LMERMHEHATKFETEIIFDHINKVDLQNRPFRLN 97
>pdb|1F6M|A Chain A, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|B Chain B, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|E Chain E, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|F Chain F, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 320
Score = 25.8 bits (55), Expect = 8.3
Identities = 24/94 (25%), Positives = 39/94 (40%), Gaps = 6/94 (6%)
Query: 142 LFVVGVSMGGWATSKIYQLESALEPIRFKFARKLSLSPFLNLSHLIRNKPLSTTD--GGF 199
L ++G G+ T+ +Y + L+P+ K L + + N P D G
Sbjct: 8 LLILGSGPAGY-TAAVYAARANLQPVLITGMEK---GGQLTTTTEVENWPGDPNDLTGPL 63
Query: 200 MLPLYHELATQYPLLLKFDQQNNPRELLRPNALN 233
++ HE AT++ + FD N RP LN
Sbjct: 64 LMERMHEHATKFETEIIFDHINKVDLQNRPFRLN 97
>pdb|1CL0|A Chain A, Crystal Structure Of Reduced Thioredoxin Reductase From
Escherichia Coli
Length = 320
Score = 25.8 bits (55), Expect = 8.3
Identities = 24/94 (25%), Positives = 39/94 (40%), Gaps = 6/94 (6%)
Query: 142 LFVVGVSMGGWATSKIYQLESALEPIRFKFARKLSLSPFLNLSHLIRNKPLSTTD--GGF 199
L ++G G+ T+ +Y + L+P+ K L + + N P D G
Sbjct: 8 LLILGSGPAGY-TAAVYAARANLQPVLITGMEK---GGQLTTTTEVENWPGDPNDLTGPL 63
Query: 200 MLPLYHELATQYPLLLKFDQQNNPRELLRPNALN 233
++ HE AT++ + FD N RP LN
Sbjct: 64 LMERMHEHATKFETEIIFDHINKVDLQNRPFRLN 97
>pdb|1TDF| Thioredoxin Reductase (E.C.1.6.4.5) Mutant With Cys 138 Replaced
By Ser (C138s)
Length = 316
Score = 25.8 bits (55), Expect = 8.3
Identities = 24/94 (25%), Positives = 39/94 (40%), Gaps = 6/94 (6%)
Query: 142 LFVVGVSMGGWATSKIYQLESALEPIRFKFARKLSLSPFLNLSHLIRNKPLSTTD--GGF 199
L ++G G+ T+ +Y + L+P+ K L + + N P D G
Sbjct: 8 LLILGSGPAGY-TAAVYAARANLQPVLITGMEK---GGQLTTTTEVENWPGDPNDLTGPL 63
Query: 200 MLPLYHELATQYPLLLKFDQQNNPRELLRPNALN 233
++ HE AT++ + FD N RP LN
Sbjct: 64 LMERMHEHATKFETEIIFDHINKVDLQNRPFRLN 97
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.136 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,120,647
Number of Sequences: 13198
Number of extensions: 83754
Number of successful extensions: 183
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 179
Number of HSP's gapped (non-prelim): 12
length of query: 372
length of database: 2,899,336
effective HSP length: 90
effective length of query: 282
effective length of database: 1,711,516
effective search space: 482647512
effective search space used: 482647512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)