BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645206|ref|NP_207376.1| dihydroorotase (pyrC)
[Helicobacter pylori 26695]
(339 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1J79|A Chain A, Molecular Structure Of Dihydroorotase: ... 167 2e-42
pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Met... 33 0.036
pdb|1GGA|A Chain A, D-Glyceraldehyde-3-Phosphate Dehydrogen... 28 1.5
pdb|1HDS|A Chain A, Hemoglobin (Sickle Cell) >gi|229976|pdb... 28 2.0
pdb|1K3T|A Chain A, Structure Of Glycosomal Glyceraldehyde-... 28 2.0
pdb|1FGT|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697n... 27 2.5
pdb|1FGR|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697e... 27 3.3
pdb|1YGE| Lipoxygenase-1 (Soybean) At 100k >gi|14719443|p... 27 3.3
pdb|1FGQ|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495e... 27 3.3
pdb|1FGO|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495a... 27 3.3
pdb|1HTI|A Chain A, Triosephosphate Isomerase (Tim) (E.C.5.... 27 4.3
pdb|1ELO| Elongation Factor G Without Nucleotide >gi|1633... 27 4.3
pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G ... 27 4.3
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation F... 27 4.3
pdb|1FGM|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694h... 26 5.7
pdb|1VIW|B Chain B, Tenebrio Molitor Alpha-Amylase-Inhibito... 26 5.7
pdb|1DHK|B Chain B, Structure Of Porcine Pancreatic Alpha-A... 26 5.7
pdb|1KF6|D Chain D, E. Coli Quinol-Fumarate Reductase With ... 25 9.7
pdb|1I6V|B Chain B, Thermus Aquaticus Core Rna Polymerase-R... 25 9.7
>pdb|1J79|A Chain A, Molecular Structure Of Dihydroorotase: A Paradigm For
Catalysis Through The Use Of A Binuclear Metal Center
pdb|1J79|B Chain B, Molecular Structure Of Dihydroorotase: A Paradigm For
Catalysis Through The Use Of A Binuclear Metal Center
Length = 347
Score = 167 bits (423), Expect = 2e-42
Identities = 102/339 (30%), Positives = 173/339 (50%), Gaps = 12/339 (3%)
Query: 8 PIDAHLHVRENALLKAVLGYSSEPFSAAVIMPNLSKPLIDTPTTLEYEEEILNH---SSN 64
P D HLH+R+ +LK V+ Y+SE + A++MPNL+ P+ + Y + IL+ +
Sbjct: 12 PDDWHLHLRDGDMLKTVVPYTSEIYGRAIVMPNLAPPVTTVEAAVAYRQRILDAVPAPHD 71
Query: 65 FKPLMSLYFNDGLTLEELQCAKEKGV-RFLKLYPKGMTTNAQNGTSDLLGEKTLEVLENA 123
F PLM+ Y D L EL+ +GV LYP TTN+ +G + + + + VLE
Sbjct: 72 FTPLMTCYLTDSLDPNELERGFNEGVFTAAXLYPANATTNSSHGVTSV--DAIMPVLERM 129
Query: 124 QKLGFILCIHAEQTGFCLD----KEFLCHSVLETFALSFPKLKIIIEHLSDWRSIALI-E 178
+K+G L +H E T +D + SV+E LK++ EH++ + + +
Sbjct: 130 EKIGMPLLVHGEVTHADIDIFDREARFIESVMEPLRQRLTALKVVFEHITTKDAADYVRD 189
Query: 179 KHDNLYATLTLHHISMTLDDLLGGSLNPHCFCKPLIKTKKDQERLLSLALKAHPKISFGS 238
++ L AT+T H+ + +L G + PH +C P++K Q+ L L ++ G+
Sbjct: 190 GNERLAATITPQHLMFNRNHMLVGGVRPHLYCLPILKRNIHQQALRELVASGFQRVFLGT 249
Query: 239 DSAPHFISKKHSANIPAGIFSAPILLPALCELFEKHNALENLQAFISDNAKTIYGLENLP 298
DSAPH +K S+ AG F+AP L + +FE+ NAL++ +AF S N YGL +
Sbjct: 250 DSAPHARHRKESSCGCAGCFNAPTALGSYATVFEEMNALQHFEAFCSVNGPQFYGLP-VN 308
Query: 299 SKKARLSKKPFMIPTHTLCLNEKIAILRGGETLSWNLQE 337
L ++ + ++ + GET+ W++++
Sbjct: 309 DTFIELVREEQQVAESIALTDDTLVPFLAGETVRWSVKQ 347
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 33.5 bits (75), Expect = 0.036
Identities = 37/133 (27%), Positives = 55/133 (40%), Gaps = 30/133 (22%)
Query: 45 LIDTPTTLEYEEEILNHSSNFKPLMSLYFNDGLTLEELQCAKEKGVRFLKLYPKGMTTNA 104
L DT TL Y I+ + FK + L ++ C G L ++ A
Sbjct: 17 LQDTVRTLSYRNAIIQNKDLFKDKIVL---------DVGC----GTGILSMFA------A 57
Query: 105 QNGTSDLLGEKTLEVLENAQKLGFILCIHAEQTGFCLDKEFLCHSVLETFALSFPKLKII 164
++G ++G ++E A++L E GF DK L LE L FPK+ II
Sbjct: 58 KHGAKHVIGVDMSSIIEMAKEL-------VELNGFS-DKITLLRGKLEDVHLPFPKVDII 109
Query: 165 IEHLSDWRSIALI 177
I S+W L+
Sbjct: 110 I---SEWMGYFLL 119
>pdb|1GGA|A Chain A, D-Glyceraldehyde-3-Phosphate Dehydrogenase (Holo Form)
(E.C.1.2.1.12)
pdb|1GGA|B Chain B, D-Glyceraldehyde-3-Phosphate Dehydrogenase (Holo Form)
(E.C.1.2.1.12)
pdb|1GGA|O Chain O, D-Glyceraldehyde-3-Phosphate Dehydrogenase (Holo Form)
(E.C.1.2.1.12)
pdb|1GGA|P Chain P, D-Glyceraldehyde-3-Phosphate Dehydrogenase (Holo Form)
(E.C.1.2.1.12)
pdb|1GGA|Q Chain Q, D-Glyceraldehyde-3-Phosphate Dehydrogenase (Holo Form)
(E.C.1.2.1.12)
pdb|1GGA|R Chain R, D-Glyceraldehyde-3-Phosphate Dehydrogenase (Holo Form)
(E.C.1.2.1.12)
Length = 358
Score = 28.1 bits (61), Expect = 1.5
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 4 TLFDPIDAHLHVRENALLKAVLGYSSEPFSAAVIMPNLSKPLIDTPTTLEYEEEILNHSS 63
T IDA L +K +LGY+ E +A + + + D+ TL+ L +
Sbjct: 267 TSIKEIDAALKRASKTYMKNILGYTDEELVSADFISDSRSSIYDSKATLQNN---LPNER 323
Query: 64 NFKPLMSLYFND 75
F ++S Y N+
Sbjct: 324 RFFKIVSWYDNE 335
>pdb|1HDS|A Chain A, Hemoglobin (Sickle Cell)
pdb|1HDS|C Chain C, Hemoglobin (Sickle Cell)
Length = 141
Score = 27.7 bits (60), Expect = 2.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 275 NALENLQAFISDNAKTIYGLENLPSKKARLSKKPFMIPTHTL 316
NAL Q ++D T+ L NL + K R++ F + +H+L
Sbjct: 64 NALTKAQGHLNDLPGTLSNLSNLHAHKLRVNPVNFKLLSHSL 105
>pdb|1K3T|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
Length = 359
Score = 27.7 bits (60), Expect = 2.0
Identities = 19/72 (26%), Positives = 31/72 (42%), Gaps = 3/72 (4%)
Query: 4 TLFDPIDAHLHVRENALLKAVLGYSSEPFSAAVIMPNLSKPLIDTPTTLEYEEEILNHSS 63
T IDA L +K +LGY+ E +A + + + D+ TL+ L
Sbjct: 268 TSIQEIDAALKRASKTYMKGILGYTDEELVSADFINDNRSSIYDSKATLQNN---LPKER 324
Query: 64 NFKPLMSLYFND 75
F ++S Y N+
Sbjct: 325 RFFKIVSWYDNE 336
>pdb|1FGT|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697n Mutant
Length = 839
Score = 27.3 bits (59), Expect = 2.5
Identities = 14/46 (30%), Positives = 23/46 (49%), Gaps = 1/46 (2%)
Query: 21 LKAVLGYSSEPFSAAVI-MPNLSKPLIDTPTTLEYEEEILNHSSNF 65
L A + + + P+ ++ P S+ L+ T EYEE I NH +
Sbjct: 689 LHAAVNFGNYPYGGLIMNRPTASRRLLPEKGTPEYEEMINNHEKAY 734
>pdb|1FGR|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697e Mutant
Length = 839
Score = 26.9 bits (58), Expect = 3.3
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 21 LKAVLGYSSEPFSAAVI-MPNLSKPLIDTPTTLEYEEEILNHSSNF 65
L A + + P+ ++ P S+ L+ T EYEE I NH +
Sbjct: 689 LHAAVNFGEYPYGGLIMNRPTASRRLLPEKGTPEYEEMINNHEKAY 734
>pdb|1YGE| Lipoxygenase-1 (Soybean) At 100k
pdb|1F8N|A Chain A, Lipoxygenase-1 (Soybean) At 100k, New Refinement
pdb|2SBL|B Chain B, Lipoxygenase-1 (Soybean) (E.C.1.13.11.12)
Length = 839
Score = 26.9 bits (58), Expect = 3.3
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 21 LKAVLGYSSEPFSAAVI-MPNLSKPLIDTPTTLEYEEEILNHSSNF 65
L A + + P+ ++ P S+ L+ T EYEE I NH +
Sbjct: 689 LHAAVNFGQYPYGGLIMNRPTASRRLLPEKGTPEYEEMINNHEKAY 734
>pdb|1FGQ|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495e Mutant
Length = 839
Score = 26.9 bits (58), Expect = 3.3
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 21 LKAVLGYSSEPFSAAVI-MPNLSKPLIDTPTTLEYEEEILNHSSNF 65
L A + + P+ ++ P S+ L+ T EYEE I NH +
Sbjct: 689 LHAAVNFGQYPYGGLIMNRPTASRRLLPEKGTPEYEEMINNHEKAY 734
>pdb|1FGO|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495a Mutant
Length = 839
Score = 26.9 bits (58), Expect = 3.3
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 21 LKAVLGYSSEPFSAAVI-MPNLSKPLIDTPTTLEYEEEILNHSSNF 65
L A + + P+ ++ P S+ L+ T EYEE I NH +
Sbjct: 689 LHAAVNFGQYPYGGLIMNRPTASRRLLPEKGTPEYEEMINNHEKAY 734
>pdb|1HTI|A Chain A, Triosephosphate Isomerase (Tim) (E.C.5.3.1.1) Complexed
With 2-Phosphoglycolic Acid
pdb|1HTI|B Chain B, Triosephosphate Isomerase (Tim) (E.C.5.3.1.1) Complexed
With 2-Phosphoglycolic Acid
Length = 248
Score = 26.6 bits (57), Expect = 4.3
Identities = 20/69 (28%), Positives = 33/69 (46%), Gaps = 11/69 (15%)
Query: 108 TSDLLGEKTLEVLENAQKLGFILCIHAEQTGFCLDKEFLCHSVLETFALSFPKLKIIIEH 167
+ +L+G+K L A+ LG I CI G LD+ T + F + K+I ++
Sbjct: 105 SDELIGQKVAHAL--AEGLGVIACI-----GEKLDER----EAGITEKVVFEQTKVIADN 153
Query: 168 LSDWRSIAL 176
+ DW + L
Sbjct: 154 VKDWSKVVL 162
>pdb|1ELO| Elongation Factor G Without Nucleotide
pdb|1DAR| Elongation Factor G In Complex With Gdp
Length = 691
Score = 26.6 bits (57), Expect = 4.3
Identities = 20/70 (28%), Positives = 36/70 (50%), Gaps = 2/70 (2%)
Query: 53 EYEEEILNHSSNFKPLMSLYFNDGL--TLEELQCAKEKGVRFLKLYPKGMTTNAQNGTSD 110
EY E+++ +++F + L + +G T EEL A KG LK+ P + + +N
Sbjct: 211 EYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQ 270
Query: 111 LLGEKTLEVL 120
LL + ++ L
Sbjct: 271 LLLDAVVDYL 280
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
Length = 691
Score = 26.6 bits (57), Expect = 4.3
Identities = 20/70 (28%), Positives = 36/70 (50%), Gaps = 2/70 (2%)
Query: 53 EYEEEILNHSSNFKPLMSLYFNDGL--TLEELQCAKEKGVRFLKLYPKGMTTNAQNGTSD 110
EY E+++ +++F + L + +G T EEL A KG LK+ P + + +N
Sbjct: 211 EYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQ 270
Query: 111 LLGEKTLEVL 120
LL + ++ L
Sbjct: 271 LLLDAVVDYL 280
>pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1EFG|A Chain A, Elongation Factor G Complexed With Guanosine
5'-Diphosphate
Length = 691
Score = 26.6 bits (57), Expect = 4.3
Identities = 20/70 (28%), Positives = 36/70 (50%), Gaps = 2/70 (2%)
Query: 53 EYEEEILNHSSNFKPLMSLYFNDGL--TLEELQCAKEKGVRFLKLYPKGMTTNAQNGTSD 110
EY E+++ +++F + L + +G T EEL A KG LK+ P + + +N
Sbjct: 211 EYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQ 270
Query: 111 LLGEKTLEVL 120
LL + ++ L
Sbjct: 271 LLLDAVVDYL 280
>pdb|1FGM|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694h Mutant
Length = 839
Score = 26.2 bits (56), Expect = 5.7
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 21 LKAVLGYSSEPFSAAVI-MPNLSKPLIDTPTTLEYEEEILNHSSNF 65
L A + + P+ ++ P S+ L+ T EYEE I NH +
Sbjct: 689 LHAAVHFGQYPYGGLIMNRPTASRRLLPEKGTPEYEEMINNHEKAY 734
>pdb|1VIW|B Chain B, Tenebrio Molitor Alpha-Amylase-Inhibitor Complex
Length = 198
Score = 26.2 bits (56), Expect = 5.7
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 8 PIDAHLHVRENALLKAVLGYSSEPFSAAVIMPNLSKPLIDTPTTLEYEEEI 58
P D H + +NA ++ S++ FS ++ P+ K + TT+E E+E+
Sbjct: 115 PWDVHDYDGQNAEVRITYNSSTKVFSVSLSNPSTGKS-NNVSTTVELEKEV 164
>pdb|1DHK|B Chain B, Structure Of Porcine Pancreatic Alpha-Amylase
Length = 223
Score = 26.2 bits (56), Expect = 5.7
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 8 PIDAHLHVRENALLKAVLGYSSEPFSAAVIMPNLSKPLIDTPTTLEYEEEI 58
P D H + +NA ++ S++ FS ++ P+ K + TT+E E+E+
Sbjct: 122 PWDVHDYDGQNAEVRITYNSSTKVFSVSLSNPSTGKS-NNVSTTVELEKEV 171
>pdb|1KF6|D Chain D, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1KF6|P Chain P, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1L0V|D Chain D, Quinol-Fumarate Reductase With Menaquinol Molecules
pdb|1L0V|P Chain P, Quinol-Fumarate Reductase With Menaquinol Molecules
pdb|1KFY|D Chain D, Quinol-Fumarate Reductase With Quinol Inhibitor 2-[1-(4-
Chloro-Phenyl)-Ethyl]-4,6-Dinitro-Phenol
pdb|1KFY|P Chain P, Quinol-Fumarate Reductase With Quinol Inhibitor 2-[1-(4-
Chloro-Phenyl)-Ethyl]-4,6-Dinitro-Phenol
Length = 119
Score = 25.4 bits (54), Expect = 9.7
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 262 ILLPALCELFEKHNALENLQAFISDNAKTIYGL 294
I+LP C L H+A+ +L+ + YGL
Sbjct: 72 IVLPLWCGLHRMHHAMHDLKIHVPAGKWVFYGL 104
>pdb|1I6V|B Chain B, Thermus Aquaticus Core Rna Polymerase-Rifampicin Complex
pdb|1I6V|A Chain A, Thermus Aquaticus Core Rna Polymerase-Rifampicin Complex
Length = 314
Score = 25.4 bits (54), Expect = 9.7
Identities = 32/113 (28%), Positives = 51/113 (44%), Gaps = 17/113 (15%)
Query: 19 ALLKAVLGYSSEPFSAAVIMPNLSKPLIDTPTTLEYEEEILNHSSNFKPLMSLYFNDGLT 78
A+LK L Y + P ++++ P +SK E EE L+ PL L GL+
Sbjct: 216 AILKEHLNYFANPEASSLPTPEVSK-----GEKRESAEEDLD-----LPLEEL----GLS 261
Query: 79 LEELQCAKEKGVRFLKLYPKGMTTNAQNGTSDLLGEKTLEVLENA-QKLGFIL 130
L KE+G+ ++ + +N +GE++LE + A K GF L
Sbjct: 262 TRVLHSLKEEGIESVRALLALNLKDLRNIPG--IGERSLEEIRQALAKKGFTL 312
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.137 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,922,113
Number of Sequences: 13198
Number of extensions: 75561
Number of successful extensions: 178
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 169
Number of HSP's gapped (non-prelim): 19
length of query: 339
length of database: 2,899,336
effective HSP length: 89
effective length of query: 250
effective length of database: 1,724,714
effective search space: 431178500
effective search space used: 431178500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)