BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645207|ref|NP_207377.1| hypothetical protein
[Helicobacter pylori 26695]
(324 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1KXF| Sindbis Virus Capsid, (Wild-Type) Residues 1-26... 44 3e-05
pdb|1KWP|A Chain A, Crystal Structure Of Mapkap2 >gi|241587... 40 4e-04
pdb|1K6F|A Chain A, Crystal Structure Of The Collagen Tripl... 39 6e-04
pdb|1LD4|A Chain A, Placement Of The Structural Proteins In... 36 0.005
pdb|1JVR| Structure Of The Htlv-Ii Matrix Protein, Nmr, 2... 33 0.058
pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In N... 31 0.22
pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomeras... 31 0.22
pdb|1A36|A Chain A, Human Dna Topoisomerase I (70 Kda) In N... 31 0.22
pdb|1KZO|A Chain A, Protein Farnesyltransferase Complexed W... 31 0.22
pdb|1CJF|C Chain C, Profilin Binds Proline-Rich Ligands In ... 30 0.37
pdb|2HIO|B Chain B, Histone Octamer (Chicken), Chromosomal ... 29 0.64
pdb|1EQZ|B Chain B, X-Ray Structure Of The Nucleosome Core ... 29 0.64
pdb|1QS1|A Chain A, Crystal Structure Of Vegetative Insecti... 29 0.83
pdb|1QS2|A Chain A, Crystal Structure Of Vip2 With Nad 29 0.83
pdb|1LRZ|A Chain A, X-Ray Crystal Structure Of Staphylococc... 28 1.4
pdb|1A31|A Chain A, Human Reconstituted Dna Topoisomerase I... 28 1.4
pdb|1A35|A Chain A, Human Reconstituted Dna Topoisomerase I... 28 1.4
pdb|2NGR|B Chain B, Transition State Complex For Gtp Hydrol... 28 1.9
pdb|1RGP| Gtpase-Activation Domain From Rhogap 28 1.9
pdb|1CI6|A Chain A, Transcription Factor Atf4-CEBP BETA BZI... 28 1.9
pdb|1KO6|B Chain B, Crystal Structure Of C-Terminal Autopro... 27 2.4
pdb|2TMA|A Chain A, Tropomyosin >gi|230768|pdb|2TMA|B Chain... 27 3.2
pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 A... 27 3.2
pdb|1H4I|B Chain B, Methylobacterium Extorquens Methanol De... 27 3.2
pdb|1KKD|A Chain A, Solution Structure Of The Calmodulin Bi... 27 4.1
pdb|1G4Y|B Chain B, 1.60 A Crystal Structure Of The Gating ... 27 4.1
pdb|1JU5|A Chain A, Ternary Complex Of An Crk Sh2 Domain, C... 26 5.4
pdb|1B43|A Chain A, Fen-1 From P. Furiosus >gi|6980605|pdb|... 26 7.0
pdb|1AUI|A Chain A, Human Calcineurin Heterodimer 26 7.0
pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer 26 7.0
pdb|1EQ1|A Chain A, Nmr Structure Of An Exchangeable Apolip... 26 7.0
pdb|1SEB|D Chain D, Complex Of The Human Mhc Class Ii Glyco... 26 7.0
>pdb|1KXF| Sindbis Virus Capsid, (Wild-Type) Residues 1-264, Tetragonal
Crystal Form (Form Ii)
Length = 264
Score = 43.9 bits (102), Expect = 3e-05
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 91 PQKP-PTPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEEKKV 149
PQ P P PP P PPKP +KPKP+ K K +P KP K + K+E ++
Sbjct: 60 PQNPRPRPPPRQKKQAPKQPPKP-KKPKPQEKKKKQPAKTKPG---KRQRMALKLEADRL 115
Query: 150 VEEKKEEKKIV 160
+ K E+ ++
Sbjct: 116 FDVKNEDGDVI 126
Score = 35.8 bits (81), Expect = 0.007
Identities = 27/99 (27%), Positives = 37/99 (37%), Gaps = 9/99 (9%)
Query: 76 PSKNTQGAPKPTLAGPQKPPTPPTPP---------TPPTPPTPPKPIEKPKPEPKPKPKP 126
P + Q AP P G T T P P P P + K PK PKP
Sbjct: 23 PRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRPPPRQKKQAPKQPPKP 82
Query: 127 EPKKPNHKHKALKKVEKVEEKKVVEEKKEEKKIVEQKVE 165
+ KP K K K +++ + K E ++ + K E
Sbjct: 83 KKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFDVKNE 121
>pdb|1KWP|A Chain A, Crystal Structure Of Mapkap2
pdb|1KWP|B Chain B, Crystal Structure Of Mapkap2
Length = 400
Score = 40.0 bits (92), Expect = 4e-04
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 18/105 (17%)
Query: 79 NTQGAPKPTLAGPQKPPTPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKAL 138
N+QG P P P PP PPTP P P + P P P+ P+ +
Sbjct: 4 NSQGQSPPVPF-----PAPAPPPQPPTPALPHPPAQPPPPPPQQFPQFH----------V 48
Query: 139 KKVEKVEEKKVVEEKKEEKKIVEQKVEQKVEQ---KKIEEKKPVK 180
K ++++ ++++ K +++ + KV Q K+ +EK +K
Sbjct: 49 KSGLQIKKNAIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALK 93
>pdb|1K6F|A Chain A, Crystal Structure Of The Collagen Triple Helix Model
[(Pro- Pro-Gly)10]3
pdb|1K6F|B Chain B, Crystal Structure Of The Collagen Triple Helix Model
[(Pro- Pro-Gly)10]3
pdb|1K6F|C Chain C, Crystal Structure Of The Collagen Triple Helix Model
[(Pro- Pro-Gly)10]3
pdb|1K6F|D Chain D, Crystal Structure Of The Collagen Triple Helix Model
[(Pro- Pro-Gly)10]3
pdb|1K6F|E Chain E, Crystal Structure Of The Collagen Triple Helix Model
[(Pro- Pro-Gly)10]3
pdb|1K6F|F Chain F, Crystal Structure Of The Collagen Triple Helix Model
[(Pro- Pro-Gly)10]3
Length = 30
Score = 39.3 bits (90), Expect = 6e-04
Identities = 16/27 (59%), Positives = 16/27 (59%)
Query: 86 PTLAGPQKPPTPPTPPTPPTPPTPPKP 112
P GP PP PP PP PP PP PP P
Sbjct: 2 PGPPGPPGPPGPPGPPGPPGPPGPPGP 28
Score = 39.3 bits (90), Expect = 6e-04
Identities = 16/27 (59%), Positives = 16/27 (59%)
Query: 90 GPQKPPTPPTPPTPPTPPTPPKPIEKP 116
GP PP PP PP PP PP PP P P
Sbjct: 3 GPPGPPGPPGPPGPPGPPGPPGPPGPP 29
Score = 38.9 bits (89), Expect = 8e-04
Identities = 16/28 (57%), Positives = 16/28 (57%)
Query: 91 PQKPPTPPTPPTPPTPPTPPKPIEKPKP 118
P PP PP PP PP PP PP P P P
Sbjct: 1 PPGPPGPPGPPGPPGPPGPPGPPGPPGP 28
Score = 38.5 bits (88), Expect = 0.001
Identities = 16/29 (55%), Positives = 16/29 (55%)
Query: 94 PPTPPTPPTPPTPPTPPKPIEKPKPEPKP 122
PP PP PP PP PP PP P P P P
Sbjct: 1 PPGPPGPPGPPGPPGPPGPPGPPGPPGPP 29
Score = 38.1 bits (87), Expect = 0.001
Identities = 17/29 (58%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 82 GAPKPTLAGPQKPPTPPTPPTPPTPPTPP 110
G P P GP PP PP PP PP PP PP
Sbjct: 3 GPPGPP--GPPGPPGPPGPPGPPGPPGPP 29
Score = 35.8 bits (81), Expect = 0.007
Identities = 15/28 (53%), Positives = 15/28 (53%)
Query: 97 PPTPPTPPTPPTPPKPIEKPKPEPKPKP 124
PP PP PP PP PP P P P P P
Sbjct: 1 PPGPPGPPGPPGPPGPPGPPGPPGPPGP 28
Score = 32.3 bits (72), Expect = 0.075
Identities = 14/29 (48%), Positives = 14/29 (48%)
Query: 100 PPTPPTPPTPPKPIEKPKPEPKPKPKPEP 128
PP PP PP PP P P P P P P
Sbjct: 1 PPGPPGPPGPPGPPGPPGPPGPPGPPGPP 29
Score = 29.3 bits (64), Expect = 0.64
Identities = 13/29 (44%), Positives = 13/29 (44%)
Query: 103 PPTPPTPPKPIEKPKPEPKPKPKPEPKKP 131
PP PP PP P P P P P P P
Sbjct: 1 PPGPPGPPGPPGPPGPPGPPGPPGPPGPP 29
>pdb|1LD4|A Chain A, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|B Chain B, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|C Chain C, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|D Chain D, Placement Of The Structural Proteins In Sindbis Virus
Length = 264
Score = 36.2 bits (82), Expect = 0.005
Identities = 27/99 (27%), Positives = 37/99 (37%), Gaps = 9/99 (9%)
Query: 76 PSKNTQGAPKPTLAGPQKPPTPPTPP---------TPPTPPTPPKPIEKPKPEPKPKPKP 126
P + Q AP P G T T P PP P P + K PK PKP
Sbjct: 23 PRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQPPRPRPPPRQKKQAPKQPPKP 82
Query: 127 EPKKPNHKHKALKKVEKVEEKKVVEEKKEEKKIVEQKVE 165
+ K K K K +++ + K E ++ + K E
Sbjct: 83 KKPKTQEKKKKQPAKPKPGKRQRMALKLEADRLFDVKNE 121
Score = 35.4 bits (80), Expect = 0.009
Identities = 22/72 (30%), Positives = 34/72 (46%), Gaps = 8/72 (11%)
Query: 93 KPPTPPTPPTP----PTPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEEKK 148
+P P P P P PPKP +KPK + K K +P KP K + K+E +
Sbjct: 59 RPQPPRPRPPPRQKKQAPKQPPKP-KKPKTQEKKKKQPAKPKPG---KRQRMALKLEADR 114
Query: 149 VVEEKKEEKKIV 160
+ + K E+ ++
Sbjct: 115 LFDVKNEDGDVI 126
>pdb|1JVR| Structure Of The Htlv-Ii Matrix Protein, Nmr, 20 Structures
Length = 137
Score = 32.7 bits (73), Expect = 0.058
Identities = 17/44 (38%), Positives = 20/44 (44%), Gaps = 6/44 (13%)
Query: 77 SKNTQGAPKPTLAGPQKPPTPPTPPTPPTPPTPPKPIEKPKPEP 120
S + AP PT P P T P PP PP+P + P EP
Sbjct: 94 SPSAPAAPVPT------PICPTTTPPPPPPPSPEAHVPPPYVEP 131
Score = 31.6 bits (70), Expect = 0.13
Identities = 19/40 (47%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 91 PQKPPTP-PTPPTPPTPPTPPKPIEKPKPEPK-PKPKPEP 128
P P P PTP P T P PP P P PE P P EP
Sbjct: 95 PSAPAAPVPTPICPTTTPPPPPP---PSPEAHVPPPYVEP 131
Score = 28.1 bits (61), Expect = 1.4
Identities = 14/39 (35%), Positives = 16/39 (40%), Gaps = 1/39 (2%)
Query: 93 KPPTPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKKP 131
K P+ P P P TP P P P P P P+ P
Sbjct: 90 KNQVSPSAPAAPVP-TPICPTTTPPPPPPPSPEAHVPPP 127
Score = 25.4 bits (54), Expect = 9.2
Identities = 12/37 (32%), Positives = 13/37 (34%)
Query: 76 PSKNTQGAPKPTLAGPQKPPTPPTPPTPPTPPTPPKP 112
PS P P PP PP P PP +P
Sbjct: 95 PSAPAAPVPTPICPTTTPPPPPPPSPEAHVPPPYVEP 131
>pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex
With A 22 Base Pair Dna Duplex Containing An 8-Oxog
Lesion
Length = 564
Score = 30.8 bits (68), Expect = 0.22
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 109 PPKPIEKP------KPEPKPKPKPEPKKPNHKHKALKKVEK-VEEKKVVEEKKEE-KKIV 160
PPK EK K + K + + ++ KA KV K + KKVVE KK+ +++
Sbjct: 435 PPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLE 494
Query: 161 EQKVEQKVEQKKIEEKKPVKKEFDPNQLSFLPKEV 195
EQ ++ +V+ EE K + ++L+FL +
Sbjct: 495 EQLMKLEVQATDREENKQI--ALGTSKLNFLDPRI 527
>pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomerase I Dna Complex
Length = 563
Score = 30.8 bits (68), Expect = 0.22
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 109 PPKPIEKP------KPEPKPKPKPEPKKPNHKHKALKKVEK-VEEKKVVEEKKEE-KKIV 160
PPK EK K + K + + ++ KA KV K + KKVVE KK+ +++
Sbjct: 434 PPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLE 493
Query: 161 EQKVEQKVEQKKIEEKKPVKKEFDPNQLSFLPKEV 195
EQ ++ +V+ EE K + ++L+FL +
Sbjct: 494 EQLMKLEVQATDREENKQI--ALGTSKLNFLDPRI 526
>pdb|1A36|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex
With A 22 Base Pair Dna Duplex
Length = 592
Score = 30.8 bits (68), Expect = 0.22
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 109 PPKPIEKP------KPEPKPKPKPEPKKPNHKHKALKKVEK-VEEKKVVEEKKEE-KKIV 160
PPK EK K + K + + ++ KA KV K + KKVVE KK+ +++
Sbjct: 463 PPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLE 522
Query: 161 EQKVEQKVEQKKIEEKKPVKKEFDPNQLSFLPKEV 195
EQ ++ +V+ EE K + ++L+FL +
Sbjct: 523 EQLMKLEVQATDREENKQI--ALGTSKLNFLDPRI 555
Score = 30.8 bits (68), Expect = 0.22
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 129 KKPNHKHKALKKVEKVEEKKVVEEKKEEKK---IVEQKVEQKVEQKKIEEKKPV 179
KKP +K K KKV + + KK +K+EE+K E++ + ++ K +E K PV
Sbjct: 1 KKPKNKDKD-KKVPEPDNKKKKPKKEEEQKWKWWEEERYPEGIKWKFLEHKGPV 53
>pdb|1KZO|A Chain A, Protein Farnesyltransferase Complexed With Farnesylated K-
Ras4b Peptide Product And Farnesyl Diphosphate Substrate
Bound Simultaneously
pdb|1KZP|A Chain A, Protein Farnesyltransferase Complexed With A Farnesylated
K- Ras4b Peptide Product
pdb|1D8D|A Chain A, Co-Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A K-Ras4b Peptide Substrate And Fpp
Analog At 2.0a Resolution
pdb|1JCR|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Non-Substrate Tetrapeptide Inhibitor
Cvfm And Farnesyl Diphosphate Substrate
pdb|1JCS|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Peptide Substrate Tkcvfm And An
Analog Of Farnesyl Diphosphate
pdb|1D8E|A Chain A, Zinc-Depleted Ftase Complexed With K-Ras4b Peptide
Substrate And Fpp Analog.
pdb|1FPP|A Chain A, Protein Farnesyltransferase Complex With Farnesyl
Diphosphate
pdb|1FT1|A Chain A, Crystal Structure Of Protein Farnesyltransferase At 2.25
Angstroms Resolution
Length = 377
Score = 30.8 bits (68), Expect = 0.22
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 90 GPQKPPTPPTPPTPPTPPTPPKPIEKPKPE 119
G P P P P PP PP P ++P+ E
Sbjct: 8 GESAPGGEPGQPEQPPPPPPPPPAQQPQEE 37
Score = 27.3 bits (59), Expect = 2.4
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 80 TQGAPKPTLAGPQKPPTPPTPPTPPTPPTPPKPIE 114
T+G + G P P PP PP P P+ E
Sbjct: 4 TEGVGESAPGGEPGQPEQPPPPPPPPPAQQPQEEE 38
>pdb|1CJF|C Chain C, Profilin Binds Proline-Rich Ligands In Two Distinct Amide
Backbone Orientations
pdb|1CJF|D Chain D, Profilin Binds Proline-Rich Ligands In Two Distinct Amide
Backbone Orientations
Length = 15
Score = 30.0 bits (66), Expect = 0.37
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 97 PPTPPTPPTPPTPP 110
PP PP PP PP PP
Sbjct: 2 PPPPPPPPPPPPPP 15
Score = 30.0 bits (66), Expect = 0.37
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 94 PPTPPTPPTPPTPP 107
PP PP PP PP PP
Sbjct: 1 PPPPPPPPPPPPPP 14
Score = 30.0 bits (66), Expect = 0.37
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 97 PPTPPTPPTPPTPP 110
PP PP PP PP PP
Sbjct: 1 PPPPPPPPPPPPPP 14
Score = 30.0 bits (66), Expect = 0.37
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 94 PPTPPTPPTPPTPP 107
PP PP PP PP PP
Sbjct: 2 PPPPPPPPPPPPPP 15
Score = 29.6 bits (65), Expect = 0.49
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 95 PTPPTPPTPPTPPTP 109
P PP PP PP PP P
Sbjct: 1 PPPPPPPPPPPPPPP 15
Score = 29.6 bits (65), Expect = 0.49
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 98 PTPPTPPTPPTPPKP 112
P PP PP PP PP P
Sbjct: 1 PPPPPPPPPPPPPPP 15
Score = 26.9 bits (58), Expect = 3.2
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 91 PQKPPTPPTPPTPP 104
P PP PP PP PP
Sbjct: 1 PPPPPPPPPPPPPP 14
Score = 26.9 bits (58), Expect = 3.2
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 91 PQKPPTPPTPPTPP 104
P PP PP PP PP
Sbjct: 2 PPPPPPPPPPPPPP 15
>pdb|2HIO|B Chain B, Histone Octamer (Chicken), Chromosomal Protein
Length = 125
Score = 29.3 bits (64), Expect = 0.64
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 118 PEPKPKPKPEPKKPNHKHKALKKVEKVEEKKVVEEKKEEKKIVEQKVEQKV 168
PEP K P PKK + K A+ K +K +KK + +KE I KV ++V
Sbjct: 1 PEPA-KSAPAPKKGSKK--AVTKTQKKGDKKRKKSRKESYSIYVYKVLKQV 48
>pdb|1EQZ|B Chain B, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1EQZ|F Chain F, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1HQ3|B Chain B, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1HQ3|F Chain F, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
Length = 126
Score = 29.3 bits (64), Expect = 0.64
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 118 PEPKPKPKPEPKKPNHKHKALKKVEKVEEKKVVEEKKEEKKIVEQKVEQKV 168
PEP K P PKK + K A+ K +K +KK + +KE I KV ++V
Sbjct: 2 PEPA-KSAPAPKKGSKK--AVTKTQKKGDKKRKKSRKESYSIYVYKVLKQV 49
>pdb|1QS1|A Chain A, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|B Chain B, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|C Chain C, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|D Chain D, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
Length = 462
Score = 28.9 bits (63), Expect = 0.83
Identities = 43/181 (23%), Positives = 67/181 (36%), Gaps = 28/181 (15%)
Query: 129 KKPNHKHKALKKVEKVEEKKVVEEKKEEKKIVEQKVEQKVEQKKI------------EEK 176
K+ K K K ++ E K EK + ++ K + K K+I ++
Sbjct: 67 KEDKEKAKEWGKEKEKEWKLTATEKGKMNNFLDNKNDIKTNYKEITFSMAGSFEDEIKDL 126
Query: 177 KPVKKEFDPNQLS---FLPKEVAPPRQENNKGLD--NQTRRDIDELYGEEFGDLGTAEKD 231
K + K FD LS K V P NK L N D + E+F D
Sbjct: 127 KEIDKMFDKTNLSNSIITYKNVEPTTIGFNKSLTEGNTINSDAMAQFKEQFLDRDIKFDS 186
Query: 232 FIRNNLRDIGRITQKYLEYPQVAAYLGQDGTNAVEFYLHPNGDITDLKIIIGSEYKMLDD 291
++ +L +++ K +V G+ T + + I+ SEYKML D
Sbjct: 187 YLDTHLT-AQQVSSKERVILKVTVPSGKGSTTPTKAGV----------ILNNSEYKMLID 235
Query: 292 N 292
N
Sbjct: 236 N 236
>pdb|1QS2|A Chain A, Crystal Structure Of Vip2 With Nad
Length = 401
Score = 28.9 bits (63), Expect = 0.83
Identities = 43/181 (23%), Positives = 67/181 (36%), Gaps = 28/181 (15%)
Query: 129 KKPNHKHKALKKVEKVEEKKVVEEKKEEKKIVEQKVEQKVEQKKI------------EEK 176
K+ K K K ++ E K EK + ++ K + K K+I ++
Sbjct: 6 KEDKEKAKEWGKEKEKEWKLTATEKGKMNNFLDNKNDIKTNYKEITFSMAGSFEDEIKDL 65
Query: 177 KPVKKEFDPNQLS---FLPKEVAPPRQENNKGLD--NQTRRDIDELYGEEFGDLGTAEKD 231
K + K FD LS K V P NK L N D + E+F D
Sbjct: 66 KEIDKMFDKTNLSNSIITYKNVEPTTIGFNKSLTEGNTINSDAMAQFKEQFLDRDIKFDS 125
Query: 232 FIRNNLRDIGRITQKYLEYPQVAAYLGQDGTNAVEFYLHPNGDITDLKIIIGSEYKMLDD 291
++ +L +++ K +V G+ T + + I+ SEYKML D
Sbjct: 126 YLDTHLT-AQQVSSKERVILKVTVPSGKGSTTPTKAGV----------ILNNSEYKMLID 174
Query: 292 N 292
N
Sbjct: 175 N 175
>pdb|1LRZ|A Chain A, X-Ray Crystal Structure Of Staphylococcus Aureus Fema
Length = 426
Score = 28.1 bits (61), Expect = 1.4
Identities = 15/43 (34%), Positives = 26/43 (59%), Gaps = 1/43 (2%)
Query: 135 HKALKKVEKVEEKKVVEEKKEEKKIVEQKVEQKVEQ-KKIEEK 176
+KALK +EK E K K++ + EQK+E+ K+++E+
Sbjct: 264 NKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEGKRLQEE 306
>pdb|1A31|A Chain A, Human Reconstituted Dna Topoisomerase I In Covalent
Complex With A 22 Base Pair Dna Duplex
Length = 538
Score = 28.1 bits (61), Expect = 1.4
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 13/65 (20%)
Query: 115 KPKPEPKPKPKPEPKKPNHKHKALKKVEKVEEKKVVEEKKEEKKIVEQKVEQKVEQKKIE 174
KPK + K K PE P++K K KK EE+++ K E++ + ++ K +E
Sbjct: 1 KPKNKDKDKKVPE---PDNKKKKPKK----------EEEQKWKWWEEERYPEGIKWKFLE 47
Query: 175 EKKPV 179
K PV
Sbjct: 48 HKGPV 52
>pdb|1A35|A Chain A, Human Reconstituted Dna Topoisomerase I In Non-Covalent
Complex With A 22 Base Pair Dna Duplex
Length = 538
Score = 28.1 bits (61), Expect = 1.4
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 13/65 (20%)
Query: 115 KPKPEPKPKPKPEPKKPNHKHKALKKVEKVEEKKVVEEKKEEKKIVEQKVEQKVEQKKIE 174
KPK + K K PE P++K K KK EE+++ K E++ + ++ K +E
Sbjct: 1 KPKNKDKDKKVPE---PDNKKKKPKK----------EEEQKWKWWEEERYPEGIKWKFLE 47
Query: 175 EKKPV 179
K PV
Sbjct: 48 HKGPV 52
>pdb|2NGR|B Chain B, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-Gap
Length = 234
Score = 27.7 bits (60), Expect = 1.9
Identities = 14/44 (31%), Positives = 19/44 (42%), Gaps = 7/44 (15%)
Query: 88 LAGPQKPPTPPTPPTPPTPPTPPKP-------IEKPKPEPKPKP 124
L QK P P PP PP P + +++ PE +P P
Sbjct: 12 LKSTQKSPATAPKPMPPRPPLPNQQFGVSLQHLQEKNPEQEPIP 55
>pdb|1RGP| Gtpase-Activation Domain From Rhogap
Length = 242
Score = 27.7 bits (60), Expect = 1.9
Identities = 14/44 (31%), Positives = 19/44 (42%), Gaps = 7/44 (15%)
Query: 88 LAGPQKPPTPPTPPTPPTPPTPPKP-------IEKPKPEPKPKP 124
L QK P P PP PP P + +++ PE +P P
Sbjct: 20 LKSTQKSPATAPKPMPPRPPLPNQQFGVSLQHLQEKNPEQEPIP 63
>pdb|1CI6|A Chain A, Transcription Factor Atf4-CEBP BETA BZIP HETERODIMER
Length = 63
Score = 27.7 bits (60), Expect = 1.9
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 138 LKKVEKVEEKKVVEEKKEEKKIVEQKVEQKVEQKKIEEKKPVKKE 182
+KK++K+E+ K + +KK EQ+ E K++E+K KE
Sbjct: 1 MKKLKKMEQNKTAATRYRQKKRAEQEA-LTGECKELEKKNEALKE 44
>pdb|1KO6|B Chain B, Crystal Structure Of C-Terminal Autoproteolytic Domain Of
Nucleoporin Nup98
pdb|1KO6|D Chain D, Crystal Structure Of C-Terminal Autoproteolytic Domain Of
Nucleoporin Nup98
Length = 64
Score = 27.3 bits (59), Expect = 2.4
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 86 PTLAGPQKPPTPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPNH 133
P+ +K T P PP T P KP P P+ + K + + +H
Sbjct: 16 PSKTSTKKLKTAPLPPASQTTPLQMALNGKPAPPPQVEKKGQLEHHHH 63
>pdb|2TMA|A Chain A, Tropomyosin
pdb|2TMA|B Chain B, Tropomyosin
Length = 284
Score = 26.9 bits (58), Expect = 3.2
Identities = 12/39 (30%), Positives = 25/39 (63%), Gaps = 2/39 (5%)
Query: 137 ALKKVEKVEEKKVVEEKKEEKKIVEQKVEQKVEQKKIEE 175
AL+K+E+ E K +E + K++E + ++ E+ +I+E
Sbjct: 109 ALQKLEEAE--KAADESERGMKVIESRAQKDEEKMEIQE 145
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
Length = 284
Score = 26.9 bits (58), Expect = 3.2
Identities = 12/39 (30%), Positives = 25/39 (63%), Gaps = 2/39 (5%)
Query: 137 ALKKVEKVEEKKVVEEKKEEKKIVEQKVEQKVEQKKIEE 175
AL+K+E+ E K +E + K++E + ++ E+ +I+E
Sbjct: 109 ALQKLEEAE--KAADESERGMKVIESRAQKDEEKMEIQE 145
>pdb|1H4I|B Chain B, Methylobacterium Extorquens Methanol Dehydrogenase
pdb|1H4I|D Chain D, Methylobacterium Extorquens Methanol Dehydrogenase
pdb|1H4J|B Chain B, Methylobacterium Extorquens Methanol Dehydrogenase D303e
Mutant
pdb|1H4J|D Chain D, Methylobacterium Extorquens Methanol Dehydrogenase D303e
Mutant
pdb|1H4J|F Chain F, Methylobacterium Extorquens Methanol Dehydrogenase D303e
Mutant
pdb|1H4J|H Chain H, Methylobacterium Extorquens Methanol Dehydrogenase D303e
Mutant
Length = 74
Score = 26.9 bits (58), Expect = 3.2
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 121 KPKPKPEPKKPNHKHKALKKVEKVEEKKVVEEKKEEK 157
K PK +PK+ N + ++K++E+ +K+V KK K
Sbjct: 27 KYDPKHDPKELNKQADSIKQMEERNKKRVENFKKTGK 63
>pdb|1KKD|A Chain A, Solution Structure Of The Calmodulin Binding Domain
(Cambd) Of Small Conductance Ca2+-Activated Potassium
Channels (Sk2)
Length = 102
Score = 26.6 bits (57), Expect = 4.1
Identities = 13/54 (24%), Positives = 29/54 (53%)
Query: 135 HKALKKVEKVEEKKVVEEKKEEKKIVEQKVEQKVEQKKIEEKKPVKKEFDPNQL 188
+K K V+K++ KV + +++ + + Q K+EQ+K+ ++ + QL
Sbjct: 42 YKNTKLVKKIDHAKVRKHQRKFLQAIHQLRSVKMEQRKLNDQANTLVDLAKTQL 95
>pdb|1G4Y|B Chain B, 1.60 A Crystal Structure Of The Gating Domain From Small
Conductance Potassium Channel Complexed With Calcium-
Calmodulin
Length = 101
Score = 26.6 bits (57), Expect = 4.1
Identities = 13/54 (24%), Positives = 29/54 (53%)
Query: 135 HKALKKVEKVEEKKVVEEKKEEKKIVEQKVEQKVEQKKIEEKKPVKKEFDPNQL 188
+K K V+K++ KV + +++ + + Q K+EQ+K+ ++ + QL
Sbjct: 42 YKNTKLVKKIDHAKVRKHQRKFLQAIHQLRSVKMEQRKLNDQANTLVDLAKTQL 95
>pdb|1JU5|A Chain A, Ternary Complex Of An Crk Sh2 Domain, Crk-Derived
Phophopeptide, And Abl Sh3 Domain By Nmr Spectroscopy
Length = 109
Score = 26.2 bits (56), Expect = 5.4
Identities = 10/23 (43%), Positives = 15/23 (64%), Gaps = 1/23 (4%)
Query: 89 AGPQKPPTPPTPPTPPTPPTPPK 111
+GP +PP PP+P PP +P +
Sbjct: 54 SGP-RPPVPPSPAQPPPGVSPSR 75
Score = 26.2 bits (56), Expect = 5.4
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 95 PTPPTPPTPPTPPTPPKP 112
P PP PP+P PP P
Sbjct: 56 PRPPVPPSPAQPPPGVSP 73
>pdb|1B43|A Chain A, Fen-1 From P. Furiosus
pdb|1B43|B Chain B, Fen-1 From P. Furiosus
Length = 340
Score = 25.8 bits (55), Expect = 7.0
Identities = 10/32 (31%), Positives = 23/32 (71%)
Query: 146 EKKVVEEKKEEKKIVEQKVEQKVEQKKIEEKK 177
+KK +E+++E ++ E+K + +E+ +IEE +
Sbjct: 87 KKKELEKRREAREEAEEKWREALEKGEIEEAR 118
>pdb|1AUI|A Chain A, Human Calcineurin Heterodimer
Length = 521
Score = 25.8 bits (55), Expect = 7.0
Identities = 15/36 (41%), Positives = 21/36 (57%), Gaps = 3/36 (8%)
Query: 215 DELYGEEFGDLGT---AEKDFIRNNLRDIGRITQKY 247
DEL EE G G A K+ IRN +R IG++ + +
Sbjct: 375 DELGSEEDGFDGATAAARKEVIRNKIRAIGKMARVF 410
>pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer
Length = 419
Score = 25.8 bits (55), Expect = 7.0
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 111 KPIEKPKPEPKPKP---KPEPKKPNHKHKALKKVEKVEEKKVVEEKKEEKKIVEQK 163
K +E + E + K K + K HKA K +V K+ E +KEE + E K
Sbjct: 48 KELETLREENRVKSDMLKEKLSKDAENHKAYLKSHQVHRHKLKEMEKEEPLLNEDK 103
>pdb|1EQ1|A Chain A, Nmr Structure Of An Exchangeable Apolipoprotein-Manduca
Sexta Apolipophorin-Iii
Length = 166
Score = 25.8 bits (55), Expect = 7.0
Identities = 22/81 (27%), Positives = 39/81 (47%), Gaps = 4/81 (4%)
Query: 136 KALKKVEKVEEKKVVEEKKEEKKIVEQKVEQKVEQKKIEEKKPVKKEFDPNQLSFLPKEV 195
KA + +E+ + VE+ EE + VE++ K + + V+ +Q L KEV
Sbjct: 71 KAKEALEQARQN--VEKTAEELRKAHPDVEKEANAFKDKLQAAVQTTVQESQK--LAKEV 126
Query: 196 APPRQENNKGLDNQTRRDIDE 216
A +E NK L + ++ D+
Sbjct: 127 ASNMEETNKKLAPKIKQAYDD 147
>pdb|1SEB|D Chain D, Complex Of The Human Mhc Class Ii Glycoprotein Hla-Dr1 And
The Bacterial Superantigen Seb
pdb|1SEB|H Chain H, Complex Of The Human Mhc Class Ii Glycoprotein Hla-Dr1 And
The Bacterial Superantigen Seb
Length = 206
Score = 25.8 bits (55), Expect = 7.0
Identities = 30/148 (20%), Positives = 61/148 (40%), Gaps = 20/148 (13%)
Query: 125 KPEPKKPNHKHKALKKVEKVEEKKVVEEKKEEKKIVEQKVEQKVEQKKIEEKKPVKKEFD 184
+P+PK P+ HK+ K +E KV+ + I + ++Q + I +K +D
Sbjct: 2 QPDPK-PDELHKSSKFTGLMENMKVLYDDNHVSAINVKSIDQFLYFDLIYS---IKDTYD 57
Query: 185 PNQLSFLPKEVAPPRQENNKGLDNQTRRDIDELYGEEFGDLGTAEKDFIRNNLRDIGRIT 244
++ F K++A ++ Y + FG + F + G +T
Sbjct: 58 NVRVEFKNKDLADKYKDK---------------YVDVFGANYYYQCYFSKKKTCMYGGVT 102
Query: 245 QKYLEYPQVAAYLGQDGTNAVEFYLHPN 272
+ + +Y + + +DG N + F + N
Sbjct: 103 E-HDKYRSITVRVFEDGKNLLSFDVQTN 129
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.312 0.137 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,238,326
Number of Sequences: 13198
Number of extensions: 109168
Number of successful extensions: 471
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 287
Number of HSP's gapped (non-prelim): 78
length of query: 324
length of database: 2,899,336
effective HSP length: 88
effective length of query: 236
effective length of database: 1,737,912
effective search space: 410147232
effective search space used: 410147232
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)