BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645213|ref|NP_207383.1| ferrodoxin-like protein
[Helicobacter pylori 26695]
(113 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1HFE|L Chain L, 1.6 A Resolution Structure Of The Fe-On... 51 3e-08
pdb|1JB0|C Chain C, Crystal Structure Of Photosystem I: A P... 46 9e-07
pdb|1K0T|A Chain A, Nmr Solution Structure Of Unbound, Oxid... 46 1e-06
pdb|1A6L| T14c Mutant Of Azotobacter Vinelandii Fdi 40 8e-05
pdb|1FRL| Ferredoxin (Fdi) Mutant With Glu 38 Replaced By... 37 4e-04
pdb|1FRJ| Ferredoxin (Fdi) Mutant With Phe 25 Replaced By... 37 7e-04
pdb|1FTC|A Chain A, Y13c Mutant Of Azotobacter Vinelandii F... 37 7e-04
pdb|1GAO|A Chain A, Crystal Structure Of The L44s Mutant Of... 37 7e-04
pdb|1G6B|A Chain A, Crystal Structure Of P47s Mutant Of Fer... 36 9e-04
pdb|1FRI| Ferredoxin (Fdi) Mutant With Asp 23 Replaced By... 36 9e-04
pdb|2FD2| Ferredoxin (Mutant With Cys 24 Replaced By Ala)... 36 9e-04
pdb|1F5C|A Chain A, Crystal Structure Of F25h Ferredoxin 1 ... 36 0.001
pdb|1F5B|A Chain A, Crystal Structure Of F2h Ferredoxin 1 M... 36 0.001
pdb|7FD1|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinela... 36 0.001
pdb|1FRH| Ferredoxin (Fdi) Mutant With Phe 2 Replaced By ... 36 0.001
pdb|1B0T|A Chain A, D15kK84D MUTANT OF AZOTOBACTER VINELAND... 35 0.002
pdb|1D3W|A Chain A, Crystal Structure Of Ferredoxin 1 D15e ... 35 0.002
pdb|1BQX|A Chain A, Artificial Fe8s8 Ferredoxin: The D13c V... 35 0.002
pdb|1FDD| Ferredoxin Mutant With Asp 15 Replaced By Asn (... 35 0.002
pdb|1FRK| Ferredoxin (Fdi) Mutant With His 35 Replaced By... 34 0.004
pdb|1FRM| Ferredoxin (Fdi) Mutant With Glu 46 Replaced By... 33 0.006
pdb|1G3O|A Chain A, Crystal Structure Of V19e Mutant Of Fer... 33 0.006
pdb|1B0V|A Chain A, I40n Mutant Of Azotobacter Vinelandii F... 33 0.008
pdb|1BC6| 7-Fe Ferredoxin From Bacillus Schlegelii, Nmr, ... 33 0.008
pdb|1BLU| Structure Of The 2[4fe-4s] Ferredoxin From Chro... 33 0.008
pdb|1BD6| 7-Fe Ferredoxin From Bacillus Schlegelii, Nmr, ... 33 0.008
pdb|1KQF|B Chain B, Formate Dehydrogenase N From E. Coli >g... 33 0.010
pdb|1ROF| Nmr Study Of 4fe-4s Ferredoxin Of Thermotoga Ma... 33 0.010
pdb|1FD2| Ferredoxin (Mutant With Cys 20 Replaced By Ala)... 32 0.013
pdb|1FRX| Ferredoxin (Fdi) Mutant With Cys 20 Replaced By... 32 0.017
pdb|1FXD| Ferredoxin Ii >gi|6137634|pdb|1F2G| The Nmr So... 32 0.017
pdb|1FF2|A Chain A, Crystal Structure Of The C42d Mutant Of... 31 0.029
pdb|1H98|A Chain A, New Insights Into Thermostability Of Ba... 31 0.037
pdb|1CLF| Clostridium Pasteurianum Ferredoxin 30 0.064
pdb|1XER| Structure Of Ferredoxin 29 0.11
pdb|1IVO|A Chain A, Crystal Structure Of The Complex Of Hum... 29 0.11
pdb|1KEK|A Chain A, Crystal Structure Of The Free Radical I... 29 0.14
pdb|1H7X|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) F... 29 0.14
pdb|1GTH|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) F... 29 0.14
pdb|1FXR|A Chain A, Ferredoxin I (4fe-4s) >gi|999891|pdb|1F... 28 0.32
pdb|1DUR|A Chain A, Replacement For 1fdx 2(4fe4s) Ferredoxi... 27 0.41
pdb|2FDN| 2[4fe-4s] Ferredoxin From Clostridium Acidi-Uri... 26 1.2
pdb|1FEH|A Chain A, Fe-Only Hydrogenase From Clostridium Pa... 25 1.6
pdb|1M6B|A Chain A, Structure Of The Her3 (Erbb3) Extracell... 25 1.6
pdb|1FCA| Ferredoxin 25 2.1
pdb|1TSP| Mol_id: 1; Molecule: Tailspike-Protein; Chain: ... 24 4.6
pdb|1JNR|B Chain B, Structure Of Adenylylsulfate Reductase ... 24 4.6
pdb|1QQ1|A Chain A, Tailspike Protein, Mutant E359g 24 4.6
pdb|1QA1|A Chain A, Tailspike Protein, Mutant V331g 24 4.6
pdb|1QA3|A Chain A, Tailspike Protein, Mutant A334i 24 4.6
pdb|1TYW| Structure Of Tailspike-Protein >gi|2392586|pdb|... 24 4.6
pdb|1QA2|A Chain A, Tailspike Protein, Mutant A334v 24 4.6
pdb|1QRB|A Chain A, Plasticity And Steric Strain In A Paral... 24 4.6
pdb|1CLW|A Chain A, Tailspike Protein From Phage P22, V331a... 24 4.6
pdb|1TYV| Structure Of Tailspike-Protein 24 4.6
pdb|1QRC|A Chain A, Tailspike Protein, Mutant W391a 24 4.6
pdb|1JRX|A Chain A, Crystal Structure Of Arg402ala Mutant F... 23 6.0
pdb|1M64|A Chain A, Crystal Structure Of Q363f Mutant Flavo... 23 6.0
pdb|1JRY|A Chain A, Crystal Structure Of Arg402lys Mutant F... 23 6.0
pdb|1KSS|A Chain A, Crystal Structure Of His505ala Mutant F... 23 6.0
pdb|1QJD|A Chain A, Flavocytochrome C3 From Shewanella Frig... 23 6.0
pdb|1JRZ|A Chain A, Crystal Structure Of Arg402tyr Mutant F... 23 6.0
pdb|1KSU|A Chain A, Crystal Structure Of His505tyr Mutant F... 23 6.0
pdb|1E39|A Chain A, Flavocytochrome C3 From Shewanella Frig... 23 6.0
pdb|1LJ1|A Chain A, Crystal Structure Of Q363fR402A MUTANT ... 23 6.0
pdb|1KHV|B Chain B, Crystal Structure Of Rabbit Hemorrhagic... 23 7.8
pdb|1KF6|B Chain B, E. Coli Quinol-Fumarate Reductase With ... 23 7.8
pdb|1DGT|B Chain B, Crystal Structure Of Nad+-Dependent Dna... 23 7.8
>pdb|1HFE|L Chain L, 1.6 A Resolution Structure Of The Fe-Only Hydrogenase
From Desulfovibrio Desulfuricans
pdb|1HFE|M Chain M, 1.6 A Resolution Structure Of The Fe-Only Hydrogenase
From Desulfovibrio Desulfuricans
Length = 421
Score = 51.2 bits (121), Expect = 3e-08
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 12 VWVNEDRCKGCDICVSVCP-AGVLGMGIEKERVLGKVAKVAYPESCIGCVQCELHCPDFA 70
V ++E +C GCD C CP A + G +G+ + + E+CI C QC HCP+ A
Sbjct: 28 VQIDEAKCIGCDTCSQYCPTAAIFGE-------MGEPHSIPHIEACINCGQCLTHCPENA 80
Query: 71 IYVA 74
IY A
Sbjct: 81 IYEA 84
>pdb|1JB0|C Chain C, Crystal Structure Of Photosystem I: A Photosynthetic
Reaction Center And Core Antenna System From
Cyanobacteria
Length = 80
Score = 46.2 bits (108), Expect = 9e-07
Identities = 21/51 (41%), Positives = 25/51 (48%)
Query: 17 DRCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCVQCELHCP 67
D C GC CV CP VL M G++A E C+GC +CE CP
Sbjct: 8 DTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACP 58
Score = 23.9 bits (50), Expect = 4.6
Identities = 11/31 (35%), Positives = 14/31 (44%), Gaps = 4/31 (12%)
Query: 19 CKGCDICVSVCPAGVLG----MGIEKERVLG 45
C GC C + CP L +G E R +G
Sbjct: 47 CVGCKRCETACPTDFLSIRVYLGAETTRSMG 77
>pdb|1K0T|A Chain A, Nmr Solution Structure Of Unbound, Oxidized Photosystem
I Subunit Psac, Containing [4fe-4s] Clusters Fa And Fb
Length = 80
Score = 45.8 bits (107), Expect = 1e-06
Identities = 21/51 (41%), Positives = 25/51 (48%)
Query: 17 DRCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCVQCELHCP 67
D C GC CV CP VL M G++A E C+GC +CE CP
Sbjct: 8 DTCIGCTQCVRACPLDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACP 58
Score = 23.9 bits (50), Expect = 4.6
Identities = 11/31 (35%), Positives = 14/31 (44%), Gaps = 4/31 (12%)
Query: 19 CKGCDICVSVCPAGVLG----MGIEKERVLG 45
C GC C + CP L +G E R +G
Sbjct: 47 CVGCKRCETACPTDFLSIRVYLGAETTRSMG 77
>pdb|1A6L| T14c Mutant Of Azotobacter Vinelandii Fdi
Length = 106
Score = 39.7 bits (91), Expect = 8e-05
Identities = 22/58 (37%), Positives = 26/58 (43%), Gaps = 9/58 (15%)
Query: 18 RCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCVQCELHCPDFAIYVAD 75
+CK CD CV VCP G V +P+ CI C CE CP AI+ D
Sbjct: 10 KCKYCD-CVEVCPVDCFYEGPN--------FLVIHPDECIDCALCEPECPAQAIFSED 58
>pdb|1FRL| Ferredoxin (Fdi) Mutant With Glu 38 Replaced By Ser (E38s)
Length = 106
Score = 37.4 bits (85), Expect = 4e-04
Identities = 22/58 (37%), Positives = 26/58 (43%), Gaps = 9/58 (15%)
Query: 18 RCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCVQCELHCPDFAIYVAD 75
+CK D CV VCP G V +P+SCI C CE CP AI+ D
Sbjct: 10 KCKYTD-CVEVCPVDCFYEGPN--------FLVIHPDSCIDCALCEPECPAQAIFSED 58
>pdb|1FRJ| Ferredoxin (Fdi) Mutant With Phe 25 Replaced By Ile (F25i)
Length = 106
Score = 36.6 bits (83), Expect = 7e-04
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 18 RCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCVQCELHCPDFAIYVAD 75
+CK D CV VCP + G V +P+ CI C CE CP AI+ D
Sbjct: 10 KCKYTD-CVEVCPVDCIYEGPN--------FLVIHPDECIDCALCEPECPAQAIFSED 58
>pdb|1FTC|A Chain A, Y13c Mutant Of Azotobacter Vinelandii Fdi
pdb|1FTC|B Chain B, Y13c Mutant Of Azotobacter Vinelandii Fdi
Length = 106
Score = 36.6 bits (83), Expect = 7e-04
Identities = 21/58 (36%), Positives = 25/58 (42%), Gaps = 9/58 (15%)
Query: 18 RCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCVQCELHCPDFAIYVAD 75
+CK D CV VCP G V +P+ CI C CE CP AI+ D
Sbjct: 10 KCKXTD-CVEVCPVDCFYEGPN--------FLVIHPDECIDCALCEPECPAQAIFSED 58
>pdb|1GAO|A Chain A, Crystal Structure Of The L44s Mutant Of Ferredoxin I
pdb|1GAO|B Chain B, Crystal Structure Of The L44s Mutant Of Ferredoxin I
pdb|1GAO|C Chain C, Crystal Structure Of The L44s Mutant Of Ferredoxin I
pdb|1GAO|D Chain D, Crystal Structure Of The L44s Mutant Of Ferredoxin I
Length = 106
Score = 36.6 bits (83), Expect = 7e-04
Identities = 21/58 (36%), Positives = 25/58 (42%), Gaps = 9/58 (15%)
Query: 18 RCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCVQCELHCPDFAIYVAD 75
+CK D CV VCP G V +P+ CI C CE CP AI+ D
Sbjct: 10 KCKYTD-CVEVCPVDCFYEGPN--------FLVIHPDECIDCASCEPECPAQAIFSED 58
>pdb|1G6B|A Chain A, Crystal Structure Of P47s Mutant Of Ferredoxin I
Length = 106
Score = 36.2 bits (82), Expect = 9e-04
Identities = 21/58 (36%), Positives = 25/58 (42%), Gaps = 9/58 (15%)
Query: 18 RCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCVQCELHCPDFAIYVAD 75
+CK D CV VCP G V +P+ CI C CE CP AI+ D
Sbjct: 10 KCKYTD-CVEVCPVDCFYEGPN--------FLVIHPDECIDCALCESECPAQAIFSED 58
Score = 24.6 bits (52), Expect = 2.7
Identities = 8/18 (44%), Positives = 11/18 (60%)
Query: 14 VNEDRCKGCDICVSVCPA 31
++ D C C +C S CPA
Sbjct: 34 IHPDECIDCALCESECPA 51
>pdb|1FRI| Ferredoxin (Fdi) Mutant With Asp 23 Replaced By Asn (D23n)
Length = 106
Score = 36.2 bits (82), Expect = 9e-04
Identities = 21/58 (36%), Positives = 25/58 (42%), Gaps = 9/58 (15%)
Query: 18 RCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCVQCELHCPDFAIYVAD 75
+CK D CV VCP G V +P+ CI C CE CP AI+ D
Sbjct: 10 KCKYTD-CVEVCPVNCFYEGPN--------FLVIHPDECIDCALCEPECPAQAIFSED 58
>pdb|2FD2| Ferredoxin (Mutant With Cys 24 Replaced By Ala) (C24A)
Length = 106
Score = 36.2 bits (82), Expect = 9e-04
Identities = 21/58 (36%), Positives = 25/58 (42%), Gaps = 9/58 (15%)
Query: 18 RCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCVQCELHCPDFAIYVAD 75
+CK D CV VCP G V +P+ CI C CE CP AI+ D
Sbjct: 10 KCKYTD-CVEVCPVDAFYEGPN--------FLVIHPDECIDCALCEPECPAQAIFSED 58
>pdb|1F5C|A Chain A, Crystal Structure Of F25h Ferredoxin 1 Mutant From
Azotobacter Vinelandii At 1.75 Angstrom Resolution
Length = 106
Score = 35.8 bits (81), Expect = 0.001
Identities = 21/58 (36%), Positives = 25/58 (42%), Gaps = 9/58 (15%)
Query: 18 RCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCVQCELHCPDFAIYVAD 75
+CK D CV VCP G V +P+ CI C CE CP AI+ D
Sbjct: 10 KCKYTD-CVEVCPVDC--------HYEGPNFLVIHPDECIDCALCEPECPAQAIFSED 58
>pdb|1F5B|A Chain A, Crystal Structure Of F2h Ferredoxin 1 Mutant From
Azotobacter Vinelandii At 1.75 Angstrom Resolution
Length = 106
Score = 35.8 bits (81), Expect = 0.001
Identities = 21/58 (36%), Positives = 25/58 (42%), Gaps = 9/58 (15%)
Query: 18 RCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCVQCELHCPDFAIYVAD 75
+CK D CV VCP G V +P+ CI C CE CP AI+ D
Sbjct: 10 KCKYTD-CVEVCPVDCFYEGPN--------FLVIHPDECIDCALCEPECPAQAIFSED 58
>pdb|7FD1|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinelandii At Ph 8.5,
100 K, 1.35 A
pdb|6FD1| 7-Fe Ferredoxin From Azotobacter Vinelandii Low Temperature,
1.35 A
pdb|6FDR|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinelandii At 100k, Na
Dithionite Reduced At Ph 8.5, Resolution 1.4 A
pdb|7FDR|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinelandii, Na
Dithionite Reduced, Ph 8.5, 1.4a Resolution, 100 K
pdb|5FD1| Ferredoxin (Oxidized) At Ph 8
pdb|1AXQ| Ferricyanide Oxidized Fdi
pdb|1FDA| Ferredoxin (Oxidized) At Ph 6
pdb|1FDB| Ferredoxin (Reduced) At Ph 6
pdb|1FER| Ferredoxin I (Ph 6.5)
Length = 106
Score = 35.8 bits (81), Expect = 0.001
Identities = 21/58 (36%), Positives = 25/58 (42%), Gaps = 9/58 (15%)
Query: 18 RCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCVQCELHCPDFAIYVAD 75
+CK D CV VCP G V +P+ CI C CE CP AI+ D
Sbjct: 10 KCKYTD-CVEVCPVDCFYEGPN--------FLVIHPDECIDCALCEPECPAQAIFSED 58
>pdb|1FRH| Ferredoxin (Fdi) Mutant With Phe 2 Replaced By Tyr (F2y)
Length = 106
Score = 35.8 bits (81), Expect = 0.001
Identities = 21/58 (36%), Positives = 25/58 (42%), Gaps = 9/58 (15%)
Query: 18 RCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCVQCELHCPDFAIYVAD 75
+CK D CV VCP G V +P+ CI C CE CP AI+ D
Sbjct: 10 KCKYTD-CVEVCPVDCFYEGPN--------FLVIHPDECIDCALCEPECPAQAIFSED 58
>pdb|1B0T|A Chain A, D15kK84D MUTANT OF AZOTOBACTER VINELANDII FDI
Length = 106
Score = 35.4 bits (80), Expect = 0.002
Identities = 22/65 (33%), Positives = 26/65 (39%), Gaps = 10/65 (15%)
Query: 13 WVNEDRCKGCDI--CVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCVQCELHCPDFA 70
+V D C C CV VCP G V +P+ CI C CE CP A
Sbjct: 2 FVVTDNCIKCKYTKCVEVCPVDCFYEGPN--------FLVIHPDECIDCALCEPECPAQA 53
Query: 71 IYVAD 75
I+ D
Sbjct: 54 IFSED 58
>pdb|1D3W|A Chain A, Crystal Structure Of Ferredoxin 1 D15e Mutant From
Azotobacter Vinelandii At 1.7 Angstrom Resolution
Length = 106
Score = 35.4 bits (80), Expect = 0.002
Identities = 22/65 (33%), Positives = 26/65 (39%), Gaps = 10/65 (15%)
Query: 13 WVNEDRCKGCDI--CVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCVQCELHCPDFA 70
+V D C C CV VCP G V +P+ CI C CE CP A
Sbjct: 2 FVVTDNCIKCKYTECVEVCPVDCFYEGPN--------FLVIHPDECIDCALCEPECPAQA 53
Query: 71 IYVAD 75
I+ D
Sbjct: 54 IFSED 58
>pdb|1BQX|A Chain A, Artificial Fe8s8 Ferredoxin: The D13c Variant Of
Bacillus Schlegelii Fe7s8 Ferredoxin
pdb|1BWE|A Chain A, Artificial Fe8s8 Ferredoxin: The D13c Variant Of
Bacillus Schlegelii Fe7s8 Ferredoxin
Length = 77
Score = 35.4 bits (80), Expect = 0.002
Identities = 22/65 (33%), Positives = 29/65 (43%), Gaps = 10/65 (15%)
Query: 13 WVNEDRCKG--CDICVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCVQCELHCPDFA 70
+V + C G C CV VCP + G ++ + P+ CI C CE CP A
Sbjct: 2 YVITEPCIGTKCASCVEVCPVDCIHEGEDQYYI--------DPDVCIDCGACEAVCPVSA 53
Query: 71 IYVAD 75
IY D
Sbjct: 54 IYHED 58
>pdb|1FDD| Ferredoxin Mutant With Asp 15 Replaced By Asn (D15n)
Length = 106
Score = 35.4 bits (80), Expect = 0.002
Identities = 22/65 (33%), Positives = 26/65 (39%), Gaps = 10/65 (15%)
Query: 13 WVNEDRCKGCDI--CVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCVQCELHCPDFA 70
+V D C C CV VCP G V +P+ CI C CE CP A
Sbjct: 2 FVVTDNCIKCKYTNCVEVCPVDCFYEGPN--------FLVIHPDECIDCALCEPECPAQA 53
Query: 71 IYVAD 75
I+ D
Sbjct: 54 IFSED 58
>pdb|1FRK| Ferredoxin (Fdi) Mutant With His 35 Replaced By Asp (H35d)
Length = 106
Score = 33.9 bits (76), Expect = 0.004
Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 9/58 (15%)
Query: 18 RCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCVQCELHCPDFAIYVAD 75
+CK D CV VCP G V P+ CI C CE CP AI+ D
Sbjct: 10 KCKYTD-CVEVCPVDCFYEGPN--------FLVIDPDECIDCALCEPECPAQAIFSED 58
>pdb|1FRM| Ferredoxin (Fdi) Mutant With Glu 46 Replaced By Ala (E46a)
Length = 106
Score = 33.5 bits (75), Expect = 0.006
Identities = 20/58 (34%), Positives = 24/58 (40%), Gaps = 9/58 (15%)
Query: 18 RCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCVQCELHCPDFAIYVAD 75
+CK D CV VCP G V +P+ CI C C CP AI+ D
Sbjct: 10 KCKYTD-CVEVCPVDCFYEGPN--------FLVIHPDECIDCALCAPECPAQAIFSED 58
Score = 23.5 bits (49), Expect = 6.0
Identities = 7/18 (38%), Positives = 10/18 (54%)
Query: 14 VNEDRCKGCDICVSVCPA 31
++ D C C +C CPA
Sbjct: 34 IHPDECIDCALCAPECPA 51
>pdb|1G3O|A Chain A, Crystal Structure Of V19e Mutant Of Ferredoxin I
Length = 106
Score = 33.5 bits (75), Expect = 0.006
Identities = 20/58 (34%), Positives = 24/58 (40%), Gaps = 9/58 (15%)
Query: 18 RCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCVQCELHCPDFAIYVAD 75
+CK D CV CP G V +P+ CI C CE CP AI+ D
Sbjct: 10 KCKYTD-CVEECPVDCFYEGPN--------FLVIHPDECIDCALCEPECPAQAIFSED 58
>pdb|1B0V|A Chain A, I40n Mutant Of Azotobacter Vinelandii Fdi
pdb|1B0V|B Chain B, I40n Mutant Of Azotobacter Vinelandii Fdi
pdb|1B0V|C Chain C, I40n Mutant Of Azotobacter Vinelandii Fdi
pdb|1B0V|D Chain D, I40n Mutant Of Azotobacter Vinelandii Fdi
Length = 106
Score = 33.1 bits (74), Expect = 0.008
Identities = 20/58 (34%), Positives = 24/58 (40%), Gaps = 9/58 (15%)
Query: 18 RCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCVQCELHCPDFAIYVAD 75
+CK D CV VCP G V +P+ C C CE CP AI+ D
Sbjct: 10 KCKYTD-CVEVCPVDCFYEGPN--------FLVIHPDECNDCALCEPECPAQAIFSED 58
Score = 23.9 bits (50), Expect = 4.6
Identities = 7/18 (38%), Positives = 10/18 (54%)
Query: 14 VNEDRCKGCDICVSVCPA 31
++ D C C +C CPA
Sbjct: 34 IHPDECNDCALCEPECPA 51
>pdb|1BC6| 7-Fe Ferredoxin From Bacillus Schlegelii, Nmr, 20 Structures
Length = 77
Score = 33.1 bits (74), Expect = 0.008
Identities = 18/51 (35%), Positives = 23/51 (44%), Gaps = 8/51 (15%)
Query: 25 CVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCVQCELHCPDFAIYVAD 75
CV VCP + G ++ + P+ CI C CE CP AIY D
Sbjct: 16 CVEVCPVDCIHEGEDQYYI--------DPDVCIDCGACEAVCPVSAIYHED 58
Score = 23.9 bits (50), Expect = 4.6
Identities = 7/22 (31%), Positives = 12/22 (53%)
Query: 13 WVNEDRCKGCDICVSVCPAGVL 34
+++ D C C C +VCP +
Sbjct: 33 YIDPDVCIDCGACEAVCPVSAI 54
>pdb|1BLU| Structure Of The 2[4fe-4s] Ferredoxin From Chromatium Vinosum
Length = 82
Score = 33.1 bits (74), Expect = 0.008
Identities = 24/85 (28%), Positives = 31/85 (36%), Gaps = 18/85 (21%)
Query: 17 DRCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCV------QCELHCPDFA 70
D C CD+C CP G + G E V P C CV QC CP
Sbjct: 6 DECINCDVCEPECPNGAISQGDE--------TYVIEPSLCTECVGHYETSQCVEVCPVDC 57
Query: 71 IYVADRKDFKFAKVSKEAQERSEKV 95
I KD + E + + E++
Sbjct: 58 II----KDPSHEETEDELRAKYERI 78
>pdb|1BD6| 7-Fe Ferredoxin From Bacillus Schlegelii, Nmr, Minimized Average
Structure
Length = 77
Score = 33.1 bits (74), Expect = 0.008
Identities = 18/51 (35%), Positives = 23/51 (44%), Gaps = 8/51 (15%)
Query: 25 CVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCVQCELHCPDFAIYVAD 75
CV VCP + G ++ + P+ CI C CE CP AIY D
Sbjct: 16 CVEVCPVDCIHEGEDQYYI--------DPDVCIDCGACEAVCPVSAIYHED 58
Score = 23.9 bits (50), Expect = 4.6
Identities = 7/22 (31%), Positives = 12/22 (53%)
Query: 13 WVNEDRCKGCDICVSVCPAGVL 34
+++ D C C C +VCP +
Sbjct: 33 YIDPDVCIDCGACEAVCPVSAI 54
>pdb|1KQF|B Chain B, Formate Dehydrogenase N From E. Coli
pdb|1KQG|B Chain B, Formate Dehydrogenase N From E. Coli
Length = 294
Score = 32.7 bits (73), Expect = 0.010
Identities = 24/93 (25%), Positives = 37/93 (38%), Gaps = 24/93 (25%)
Query: 17 DRCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCVQ---------CELHCP 67
+ C GC C++ CP + + E RV C CV C CP
Sbjct: 131 ENCIGCGYCIAGCPFNIPRLNKEDNRVY----------KCTLCVDRVSVGQEPACVKTCP 180
Query: 68 DFAIYVADRKDFKFAKVSKEAQERSEKVKANKY 100
AI+ +K+ + + A++R K+KA Y
Sbjct: 181 TGAIHFGTKKE-----MLELAEQRVAKLKARGY 208
Score = 26.2 bits (56), Expect = 0.92
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 46 KVAKVAYPESCIGCVQCELHCPDF 69
+VAK+ +CIGC C++ C ++
Sbjct: 29 EVAKLIDVSTCIGCKACQVACSEW 52
>pdb|1ROF| Nmr Study Of 4fe-4s Ferredoxin Of Thermotoga Maritima
pdb|1VJW| Structure Of Oxidoreductase (Nadp+(A),Ferredoxin(A))
Length = 60
Score = 32.7 bits (73), Expect = 0.010
Identities = 24/65 (36%), Positives = 34/65 (51%), Gaps = 8/65 (12%)
Query: 12 VWVNEDRCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCVQ-CELHCPDFA 70
V V+ D C GC +C ++CP V +G + GK AKV PE+ + C + CP A
Sbjct: 3 VRVDADACIGCGVCENLCP-DVFQLGDD-----GK-AKVLQPETDLPCAKDAADSCPTGA 55
Query: 71 IYVAD 75
I V +
Sbjct: 56 ISVEE 60
>pdb|1FD2| Ferredoxin (Mutant With Cys 20 Replaced By Ala) (C20A)
Length = 106
Score = 32.3 bits (72), Expect = 0.013
Identities = 20/58 (34%), Positives = 24/58 (40%), Gaps = 9/58 (15%)
Query: 18 RCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCVQCELHCPDFAIYVAD 75
+CK D CV V P G V +P+ CI C CE CP AI+ D
Sbjct: 10 KCKYTD-CVEVAPVDCFYEGPN--------FLVIHPDECIDCALCEPECPAQAIFSED 58
>pdb|1FRX| Ferredoxin (Fdi) Mutant With Cys 20 Replaced By Ser (C20s)
Length = 106
Score = 32.0 bits (71), Expect = 0.017
Identities = 20/58 (34%), Positives = 24/58 (40%), Gaps = 9/58 (15%)
Query: 18 RCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCVQCELHCPDFAIYVAD 75
+CK D CV V P G V +P+ CI C CE CP AI+ D
Sbjct: 10 KCKYTD-CVEVSPVDCFYEGPN--------FLVIHPDECIDCALCEPECPAQAIFSED 58
>pdb|1FXD| Ferredoxin Ii
pdb|1F2G| The Nmr Solution Structure Of The 3fe Ferredoxin Ii From
Desulfovibrio Gigas, 15 Structures
Length = 58
Score = 32.0 bits (71), Expect = 0.017
Identities = 23/59 (38%), Positives = 30/59 (49%), Gaps = 8/59 (13%)
Query: 14 VNEDRCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCVQCEL-HCPDFAI 71
VN+D C C+ CV +CP V M E G A V P+S + CV+ + CP AI
Sbjct: 4 VNDD-CMACEACVEICP-DVFEMNEE-----GDKAVVINPDSDLDCVEEAIDSCPAEAI 55
>pdb|1FF2|A Chain A, Crystal Structure Of The C42d Mutant Of Azotobacter
Vinelandii 7fe Ferredoxin (Fdi)
Length = 106
Score = 31.2 bits (69), Expect = 0.029
Identities = 20/58 (34%), Positives = 24/58 (40%), Gaps = 9/58 (15%)
Query: 18 RCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCVQCELHCPDFAIYVAD 75
+CK D CV VCP G V +P+ CI CE CP AI+ D
Sbjct: 10 KCKYTD-CVEVCPVDCFYEGPN--------FLVIHPDECIDDALCEPECPAQAIFSED 58
>pdb|1H98|A Chain A, New Insights Into Thermostability Of Bacterial
Ferredoxins: High Resolution Crystal Structure Of The
Seven-Iron Ferredoxin From Thermus Thermophilus
Length = 78
Score = 30.8 bits (68), Expect = 0.037
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 8/48 (16%)
Query: 25 CVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCVQCELHCPDFAIY 72
CV VCP + G ++ + +PE CI C C CP AIY
Sbjct: 16 CVEVCPVECIYDGGDQFYI--------HPEECIDCGACVPACPVNAIY 55
Score = 23.9 bits (50), Expect = 4.6
Identities = 7/26 (26%), Positives = 12/26 (45%)
Query: 9 GVAVWVNEDRCKGCDICVSVCPAGVL 34
G +++ + C C CV CP +
Sbjct: 29 GDQFYIHPEECIDCGACVPACPVNAI 54
>pdb|1CLF| Clostridium Pasteurianum Ferredoxin
Length = 55
Score = 30.0 bits (66), Expect = 0.064
Identities = 15/51 (29%), Positives = 18/51 (34%), Gaps = 8/51 (15%)
Query: 17 DRCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCVQCELHCP 67
D C C C S CP + G V ++CI C C CP
Sbjct: 6 DSCVSCGACASECPVNAISQ--------GDSIFVIDADTCIDCGNCANVCP 48
Score = 25.8 bits (55), Expect = 1.2
Identities = 11/29 (37%), Positives = 16/29 (54%), Gaps = 1/29 (3%)
Query: 4 MSAPDGVAVWVNEDRCKGCDICVSVCPAG 32
+S D + V ++ D C C C +VCP G
Sbjct: 23 ISQGDSIFV-IDADTCIDCGNCANVCPVG 50
Score = 23.5 bits (49), Expect = 6.0
Identities = 9/22 (40%), Positives = 11/22 (49%)
Query: 54 ESCIGCVQCELHCPDFAIYVAD 75
+SC+ C C CP AI D
Sbjct: 6 DSCVSCGACASECPVNAISQGD 27
>pdb|1XER| Structure Of Ferredoxin
Length = 103
Score = 29.3 bits (64), Expect = 0.11
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 9 GVAVWVNEDRCKGCDICVSVCPAGVL-GMGIEKERVLGKVAKVAYPESCIGCVQCELHCP 67
G V V+ D C C++ CP V K A ++CI C+ C CP
Sbjct: 35 GTIVGVDFDLCIADGSCINACPVNVFQWYDTPGHPASEKKADPVNEQACIFCMACVNVCP 94
Query: 68 DFAIYV 73
AI V
Sbjct: 95 VAAIDV 100
>pdb|1IVO|A Chain A, Crystal Structure Of The Complex Of Human Epidermal Growth
Factor And Receptor Extracellular Domains.
pdb|1IVO|B Chain B, Crystal Structure Of The Complex Of Human Epidermal Growth
Factor And Receptor Extracellular Domains
Length = 622
Score = 29.3 bits (64), Expect = 0.11
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 25 CVSVCPAGVLGMG---IEKERVLGKVAKVAYPESCIGCVQCELH-CP 67
CV CPAGV+G + K G V + +P GC L CP
Sbjct: 567 CVKTCPAGVMGENNTLVWKYADAGHVCHLCHPNCTYGCTGPGLEGCP 613
Score = 23.1 bits (48), Expect = 7.8
Identities = 11/38 (28%), Positives = 15/38 (38%)
Query: 2 AKMSAPDGVAVWVNEDRCKGCDICVSVCPAGVLGMGIE 39
A + + VW D C +C C G G G+E
Sbjct: 573 AGVMGENNTLVWKYADAGHVCHLCHPNCTYGCTGPGLE 610
>pdb|1KEK|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase
pdb|1KEK|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase
pdb|1B0P|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|1B0P|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2PDA|A Chain A, Crystal Structure Of The Complex Between Pyruvate-
Ferredoxin Oxidoreductase From Desulfovibrio Africanus
And Pyruvate.
pdb|2PDA|B Chain B, Crystal Structure Of The Complex Between Pyruvate-
Ferredoxin Oxidoreductase From Desulfovibrio Africanus
And Pyruvate
Length = 1231
Score = 28.9 bits (63), Expect = 0.14
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 53 PESCIGCVQCELHCPDFAI--YVADRKDFKFAKVSKEAQE-RSEKVKANKYMLLEETI 107
PE+CI C QC CP AI +A ++ A + A E + +++K K+ + T+
Sbjct: 685 PENCIQCNQCAFVCPHSAILPVLAKEEELVGAPANFTALEAKGKELKGYKFRIQINTL 742
Score = 28.9 bits (63), Expect = 0.14
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 24/82 (29%)
Query: 9 GVAV----WVNEDRCKGCDICVSVCP-AGVLGMGIEKERVLGKVAKVAYPES-------- 55
GVA+ WV E+ C C+ C VCP + +L + ++E ++G A E+
Sbjct: 675 GVAINVPQWVPEN-CIQCNQCAFVCPHSAILPVLAKEEELVGAPANFTALEAKGKELKGY 733
Query: 56 ----------CIGCVQCELHCP 67
C+GC C CP
Sbjct: 734 KFRIQINTLDCMGCGNCADICP 755
>pdb|1H7X|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And
5-Fluorouracil
pdb|1H7X|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And
5-Fluorouracil
pdb|1H7X|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And
5-Fluorouracil
pdb|1H7X|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And
5-Fluorouracil
Length = 1025
Score = 28.9 bits (63), Expect = 0.14
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 17 DRCKGCDICVSVCP 30
D C GC +C+SVCP
Sbjct: 984 DTCTGCTLCLSVCP 997
Score = 28.5 bits (62), Expect = 0.19
Identities = 17/66 (25%), Positives = 28/66 (41%), Gaps = 6/66 (9%)
Query: 3 KMSAPDGVAVWVNEDRCKGCDICVSVC-PAGVLGMGIEKERVLGKVAKVAYPESCIGCVQ 61
++S + V ++E+ C C C C +G + + E L V ++C GC
Sbjct: 937 ELSNIEQVVAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVT-----DTCTGCTL 991
Query: 62 CELHCP 67
C CP
Sbjct: 992 CLSVCP 997
>pdb|1GTH|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1H7W|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1GT8|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1H7W|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1GTH|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTE|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTH|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GT8|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GTE|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GT8|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GTE|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
Length = 1025
Score = 28.9 bits (63), Expect = 0.14
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 17 DRCKGCDICVSVCP 30
D C GC +C+SVCP
Sbjct: 984 DTCTGCTLCLSVCP 997
Score = 28.5 bits (62), Expect = 0.19
Identities = 17/66 (25%), Positives = 28/66 (41%), Gaps = 6/66 (9%)
Query: 3 KMSAPDGVAVWVNEDRCKGCDICVSVC-PAGVLGMGIEKERVLGKVAKVAYPESCIGCVQ 61
++S + V ++E+ C C C C +G + + E L V ++C GC
Sbjct: 937 ELSNIEQVVAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVT-----DTCTGCTL 991
Query: 62 CELHCP 67
C CP
Sbjct: 992 CLSVCP 997
>pdb|1FXR|A Chain A, Ferredoxin I (4fe-4s)
pdb|1FXR|B Chain B, Ferredoxin I (4fe-4s)
pdb|1DAX| Oxidised Desulfovibrio Africanus Ferredoxin I, Nmr, Minimized
Average Structure
pdb|1DFD| Oxidised Desulfovibrio Africanus Ferredoxin I, Nmr, 19
Structures
Length = 64
Score = 27.7 bits (60), Expect = 0.32
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 13 WVNEDRCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCVQ-CELHC 66
+V++D C C+ CV + P G M E E+ K + A E + C + C
Sbjct: 5 YVDQDECIACESCVEIAP-GAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQC 58
>pdb|1DUR|A Chain A, Replacement For 1fdx 2(4fe4s) Ferredoxin From (Now)
Peptostreptococcus Asaccharolyticus
Length = 55
Score = 27.3 bits (59), Expect = 0.41
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 8 DGVAVWVNEDRCKGCDICVSVCPAG 32
+G ++ D C C C SVCP G
Sbjct: 25 EGSIYAIDADSCIDCGSCASVCPVG 49
Score = 26.6 bits (57), Expect = 0.71
Identities = 15/55 (27%), Positives = 18/55 (32%), Gaps = 9/55 (16%)
Query: 13 WVNEDRCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCVQCELHCP 67
+V D C C C CP + G +SCI C C CP
Sbjct: 2 YVINDSCIACGACKPECPVNCIQEG---------SIYAIDADSCIDCGSCASVCP 47
>pdb|2FDN| 2[4fe-4s] Ferredoxin From Clostridium Acidi-Urici
pdb|1FDN| Ferredoxin
Length = 55
Score = 25.8 bits (55), Expect = 1.2
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 54 ESCIGCVQCELHCPDFAIYVAD 75
E+CI C CE CP AI D
Sbjct: 6 EACISCGACEPECPVNAISSGD 27
Score = 23.5 bits (49), Expect = 6.0
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 14 VNEDRCKGCDICVSVCP 30
++ D C C C VCP
Sbjct: 32 IDADTCIDCGACAGVCP 48
>pdb|1FEH|A Chain A, Fe-Only Hydrogenase From Clostridium Pasteurianum
pdb|1C4A|A Chain A, Binding Of Exogenously Added Carbon Monoxide At The Active
Site Of The Fe-Only Hydrogenase (Cpi) From Clostridium
Pasteurianum
pdb|1C4C|A Chain A, Binding Of Exogenously Added Carbon Monoxide At The Active
Site Of The Fe-Only Hydrogenase (Cpi) From Clostridium
Pasteurianum
Length = 574
Score = 25.4 bits (54), Expect = 1.6
Identities = 17/64 (26%), Positives = 24/64 (36%), Gaps = 6/64 (9%)
Query: 14 VNEDRCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIG------CVQCELHCP 67
V+ +C C CV+ C ++ GK A E C C QC + CP
Sbjct: 142 VDRTKCLLCGRCVNACGKNTETYAMKFLNKNGKTIIGAEDEKCFDDTNCLLCGQCIIACP 201
Query: 68 DFAI 71
A+
Sbjct: 202 VAAL 205
>pdb|1M6B|A Chain A, Structure Of The Her3 (Erbb3) Extracellular Domain
pdb|1M6B|B Chain B, Structure Of The Her3 (Erbb3) Extracellular Domain
Length = 621
Score = 25.4 bits (54), Expect = 1.6
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 9/42 (21%)
Query: 25 CVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCVQCELHC 66
CVS CP GVLG G + K YP+ C C +C
Sbjct: 566 CVSSCPHGVLG-------AKGPIYK--YPDVQNECRPCHENC 598
>pdb|1FCA| Ferredoxin
Length = 55
Score = 25.0 bits (53), Expect = 2.1
Identities = 10/18 (55%), Positives = 11/18 (60%)
Query: 54 ESCIGCVQCELHCPDFAI 71
E+CI C CE CP AI
Sbjct: 6 EACISCGACEPECPVDAI 23
Score = 23.5 bits (49), Expect = 6.0
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 14 VNEDRCKGCDICVSVCP 30
++ D C C C VCP
Sbjct: 32 IDADTCIDCGACAGVCP 48
>pdb|1TSP| Mol_id: 1; Molecule: Tailspike-Protein; Chain: Null; Domain:
Residues 109 - 666; Synonym: Tsp
Length = 559
Score = 23.9 bits (50), Expect = 4.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 5 SAPDGVAVWVNEDRCKGCDI 24
S PD V++ VN C+G +I
Sbjct: 492 STPDAVSLKVNHKDCRGAEI 511
>pdb|1JNR|B Chain B, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNR|D Chain D, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNZ|B Chain B, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNZ|D Chain D, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
Length = 150
Score = 23.9 bits (50), Expect = 4.6
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 17 DRCKGCDICVSVCPAGVL 34
D C C CV +CP G +
Sbjct: 45 DMCWECYSCVKMCPQGAI 62
>pdb|1QQ1|A Chain A, Tailspike Protein, Mutant E359g
Length = 559
Score = 23.9 bits (50), Expect = 4.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 5 SAPDGVAVWVNEDRCKGCDI 24
S PD V++ VN C+G +I
Sbjct: 492 STPDAVSLKVNHKDCRGAEI 511
>pdb|1QA1|A Chain A, Tailspike Protein, Mutant V331g
Length = 554
Score = 23.9 bits (50), Expect = 4.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 5 SAPDGVAVWVNEDRCKGCDI 24
S PD V++ VN C+G +I
Sbjct: 487 STPDAVSLKVNHKDCRGAEI 506
>pdb|1QA3|A Chain A, Tailspike Protein, Mutant A334i
Length = 554
Score = 23.9 bits (50), Expect = 4.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 5 SAPDGVAVWVNEDRCKGCDI 24
S PD V++ VN C+G +I
Sbjct: 487 STPDAVSLKVNHKDCRGAEI 506
>pdb|1TYW| Structure Of Tailspike-Protein
pdb|1TYU| Structure Of Tailspike-Protein
pdb|1TYX| Title Of Tailspike-Protein
Length = 543
Score = 23.9 bits (50), Expect = 4.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 5 SAPDGVAVWVNEDRCKGCDI 24
S PD V++ VN C+G +I
Sbjct: 476 STPDAVSLKVNHKDCRGAEI 495
>pdb|1QA2|A Chain A, Tailspike Protein, Mutant A334v
Length = 554
Score = 23.9 bits (50), Expect = 4.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 5 SAPDGVAVWVNEDRCKGCDI 24
S PD V++ VN C+G +I
Sbjct: 487 STPDAVSLKVNHKDCRGAEI 506
>pdb|1QRB|A Chain A, Plasticity And Steric Strain In A Parallel Beta-Helix:
Rational Mutations In P22 Tailspike Protein
Length = 559
Score = 23.9 bits (50), Expect = 4.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 5 SAPDGVAVWVNEDRCKGCDI 24
S PD V++ VN C+G +I
Sbjct: 492 STPDAVSLKVNHKDCRGAEI 511
>pdb|1CLW|A Chain A, Tailspike Protein From Phage P22, V331a Mutant
Length = 554
Score = 23.9 bits (50), Expect = 4.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 5 SAPDGVAVWVNEDRCKGCDI 24
S PD V++ VN C+G +I
Sbjct: 487 STPDAVSLKVNHKDCRGAEI 506
>pdb|1TYV| Structure Of Tailspike-Protein
Length = 542
Score = 23.9 bits (50), Expect = 4.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 5 SAPDGVAVWVNEDRCKGCDI 24
S PD V++ VN C+G +I
Sbjct: 475 STPDAVSLKVNHKDCRGAEI 494
>pdb|1QRC|A Chain A, Tailspike Protein, Mutant W391a
Length = 559
Score = 23.9 bits (50), Expect = 4.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 5 SAPDGVAVWVNEDRCKGCDI 24
S PD V++ VN C+G +I
Sbjct: 492 STPDAVSLKVNHKDCRGAEI 511
>pdb|1JRX|A Chain A, Crystal Structure Of Arg402ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRX|B Chain B, Crystal Structure Of Arg402ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 23.5 bits (49), Expect = 6.0
Identities = 20/51 (39%), Positives = 25/51 (48%), Gaps = 1/51 (1%)
Query: 2 AKMSAP-DGVAVWVNEDRCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVA 51
A SAP D V V V G +S +G + IEKE V+G AK+A
Sbjct: 118 ALASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLA 168
>pdb|1M64|A Chain A, Crystal Structure Of Q363f Mutant Flavocytochrome C3
pdb|1M64|B Chain B, Crystal Structure Of Q363f Mutant Flavocytochrome C3
Length = 571
Score = 23.5 bits (49), Expect = 6.0
Identities = 20/51 (39%), Positives = 25/51 (48%), Gaps = 1/51 (1%)
Query: 2 AKMSAP-DGVAVWVNEDRCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVA 51
A SAP D V V V G +S +G + IEKE V+G AK+A
Sbjct: 118 ALASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLA 168
>pdb|1JRY|A Chain A, Crystal Structure Of Arg402lys Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRY|B Chain B, Crystal Structure Of Arg402lys Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 23.5 bits (49), Expect = 6.0
Identities = 20/51 (39%), Positives = 25/51 (48%), Gaps = 1/51 (1%)
Query: 2 AKMSAP-DGVAVWVNEDRCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVA 51
A SAP D V V V G +S +G + IEKE V+G AK+A
Sbjct: 118 ALASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLA 168
>pdb|1KSS|A Chain A, Crystal Structure Of His505ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 23.5 bits (49), Expect = 6.0
Identities = 20/51 (39%), Positives = 25/51 (48%), Gaps = 1/51 (1%)
Query: 2 AKMSAP-DGVAVWVNEDRCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVA 51
A SAP D V V V G +S +G + IEKE V+G AK+A
Sbjct: 118 ALASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLA 168
>pdb|1QJD|A Chain A, Flavocytochrome C3 From Shewanella Frigidimarina
Length = 571
Score = 23.5 bits (49), Expect = 6.0
Identities = 20/51 (39%), Positives = 25/51 (48%), Gaps = 1/51 (1%)
Query: 2 AKMSAP-DGVAVWVNEDRCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVA 51
A SAP D V V V G +S +G + IEKE V+G AK+A
Sbjct: 118 ALASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLA 168
>pdb|1JRZ|A Chain A, Crystal Structure Of Arg402tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRZ|B Chain B, Crystal Structure Of Arg402tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 23.5 bits (49), Expect = 6.0
Identities = 20/51 (39%), Positives = 25/51 (48%), Gaps = 1/51 (1%)
Query: 2 AKMSAP-DGVAVWVNEDRCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVA 51
A SAP D V V V G +S +G + IEKE V+G AK+A
Sbjct: 118 ALASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLA 168
>pdb|1KSU|A Chain A, Crystal Structure Of His505tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1KSU|B Chain B, Crystal Structure Of His505tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 23.5 bits (49), Expect = 6.0
Identities = 20/51 (39%), Positives = 25/51 (48%), Gaps = 1/51 (1%)
Query: 2 AKMSAP-DGVAVWVNEDRCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVA 51
A SAP D V V V G +S +G + IEKE V+G AK+A
Sbjct: 118 ALASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLA 168
>pdb|1E39|A Chain A, Flavocytochrome C3 From Shewanella Frigidimarina Histidine
365 Mutated To Alanine
Length = 571
Score = 23.5 bits (49), Expect = 6.0
Identities = 20/51 (39%), Positives = 25/51 (48%), Gaps = 1/51 (1%)
Query: 2 AKMSAP-DGVAVWVNEDRCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVA 51
A SAP D V V V G +S +G + IEKE V+G AK+A
Sbjct: 118 ALASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLA 168
>pdb|1LJ1|A Chain A, Crystal Structure Of Q363fR402A MUTANT FLAVOCYTOCHROME C3
pdb|1LJ1|B Chain B, Crystal Structure Of Q363fR402A MUTANT FLAVOCYTOCHROME C3
Length = 571
Score = 23.5 bits (49), Expect = 6.0
Identities = 20/51 (39%), Positives = 25/51 (48%), Gaps = 1/51 (1%)
Query: 2 AKMSAP-DGVAVWVNEDRCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVA 51
A SAP D V V V G +S +G + IEKE V+G AK+A
Sbjct: 118 ALASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLA 168
>pdb|1KHV|B Chain B, Crystal Structure Of Rabbit Hemorrhagic Disease Virus Rna-
Dependent Rna Polymerase Complexed With Lu3+
pdb|1KHW|B Chain B, Crystal Structure Of Rabbit Hemorrhagic Disease Virus Rna-
Dependent Rna Polymerase Complexed With Mn2+
pdb|1KHV|A Chain A, Crystal Structure Of Rabbit Hemorrhagic Disease Virus Rna-
Dependent Rna Polymerase Complexed With Lu3+
pdb|1KHW|A Chain A, Crystal Structure Of Rabbit Hemorrhagic Disease Virus Rna-
Dependent Rna Polymerase Complexed With Mn2+
Length = 516
Score = 23.1 bits (48), Expect = 7.8
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 21 GCDICVSVCPAGVLGMGIEKERVLGKVAKVA 51
GCD+ V+VC A V K +++ + +A
Sbjct: 192 GCDVGVAVCAAAVFHNICYKLKMVARFGPIA 222
>pdb|1KF6|B Chain B, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1KF6|N Chain N, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1L0V|B Chain B, Quinol-Fumarate Reductase With Menaquinol Molecules
pdb|1L0V|N Chain N, Quinol-Fumarate Reductase With Menaquinol Molecules
pdb|1KFY|B Chain B, Quinol-Fumarate Reductase With Quinol Inhibitor 2-[1-(4-
Chloro-Phenyl)-Ethyl]-4,6-Dinitro-Phenol
pdb|1KFY|N Chain N, Quinol-Fumarate Reductase With Quinol Inhibitor 2-[1-(4-
Chloro-Phenyl)-Ethyl]-4,6-Dinitro-Phenol
Length = 243
Score = 23.1 bits (48), Expect = 7.8
Identities = 9/26 (34%), Positives = 12/26 (45%)
Query: 46 KVAKVAYPESCIGCVQCELHCPDFAI 71
++AK CI C C CP F +
Sbjct: 138 QMAKYHQFSGCINCGLCYAACPQFGL 163
>pdb|1DGT|B Chain B, Crystal Structure Of Nad+-Dependent Dna Ligase
pdb|1DGS|A Chain A, Crystal Structure Of Nad+-Dependent Dna Ligase From T.
Filiformis
pdb|1DGS|B Chain B, Crystal Structure Of Nad+-Dependent Dna Ligase From T.
Filiformis
pdb|1DGT|A Chain A, Crystal Structure Of Nad+-Dependent Dna Ligase
Length = 667
Score = 23.1 bits (48), Expect = 7.8
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 40 KERVLGKVAKVAYPESCIGC 59
KER GK + +PE+C C
Sbjct: 390 KERRTGKERPIRWPEACPEC 409
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.137 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 659,906
Number of Sequences: 13198
Number of extensions: 23892
Number of successful extensions: 161
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 45
Number of HSP's gapped (non-prelim): 110
length of query: 113
length of database: 2,899,336
effective HSP length: 76
effective length of query: 37
effective length of database: 1,896,288
effective search space: 70162656
effective search space used: 70162656
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)