BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645216|ref|NP_207386.1| ferredoxin oxidoreductase,
gamma subunit [Helicobacter pylori 26695]
(186 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1I5E|A Chain A, Crystal Structure Of Bacillus Caldolyti... 26 2.4
pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botuli... 25 7.1
pdb|1KNY|A Chain A, Kanamycin Nucleotidyltransferase >gi|18... 24 9.3
pdb|1KAN|A Chain A, Kanamycin Nucleotidyltransferase (E.C.2... 24 9.3
>pdb|1I5E|A Chain A, Crystal Structure Of Bacillus Caldolyticus Uracil
Phosphoribosyltransferase With Bound Ump
pdb|1I5E|B Chain B, Crystal Structure Of Bacillus Caldolyticus Uracil
Phosphoribosyltransferase With Bound Ump
Length = 209
Score = 26.2 bits (56), Expect = 2.4
Identities = 22/83 (26%), Positives = 36/83 (42%), Gaps = 12/83 (14%)
Query: 23 AEAKIVSGGYGTKTSTYTSQVRGGPTKVDILLDRDEIIFPYAKEGEIDFMLSVAQIS--- 79
A AK+++G K +R G VD +L + P AK G I +
Sbjct: 62 ARAKVIAG----KKLGVIPILRAGIGMVDGILK----LIPAAKVGHIGLYRDPQTLKPVE 113
Query: 80 -YNQFKSDIKQGGIVVIDPNLVT 101
Y + SD+++ +++DP L T
Sbjct: 114 YYVKLPSDVEERDFIIVDPMLAT 136
>pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With Doxorubicin
pdb|1EPW|A Chain A, Crystal Structure Of Clostridium Neurotoxin Type B
pdb|1F31|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With A Trisaccharide
Length = 1290
Score = 24.6 bits (52), Expect = 7.1
Identities = 15/51 (29%), Positives = 23/51 (44%)
Query: 118 ISIAKDEVGNIITQSVVALAITVELTKCVEEIIVLDTMLKKVPAKVADTNK 168
I+ A D + N I V+ + + VE+++ D LKK D NK
Sbjct: 763 INQAIDNINNFINGCSVSYLMKKMIPLAVEKLLDFDNTLKKNLLNYIDENK 813
>pdb|1KNY|A Chain A, Kanamycin Nucleotidyltransferase
pdb|1KNY|B Chain B, Kanamycin Nucleotidyltransferase
Length = 253
Score = 24.3 bits (51), Expect = 9.3
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 34 TKTSTYTSQVRGGPTKVDILLDRDEIIFPYAKEGEIDFMLSVAQ 77
T+ + ++ + G KV++ +EI+ YA + E D+ L+ Q
Sbjct: 59 TEEAEFSHEWTTGEWKVEVNFYSEEILLDYASQVESDWPLTHGQ 102
>pdb|1KAN|A Chain A, Kanamycin Nucleotidyltransferase (E.C.2.7.7.-) Mutant With
Asp 80 Replaced By Tyr And Thr 130 Replaced By Lys
(D80y,T130k)
pdb|1KAN|B Chain B, Kanamycin Nucleotidyltransferase (E.C.2.7.7.-) Mutant With
Asp 80 Replaced By Tyr And Thr 130 Replaced By Lys
(D80y,T130k)
Length = 253
Score = 24.3 bits (51), Expect = 9.3
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 34 TKTSTYTSQVRGGPTKVDILLDRDEIIFPYAKEGEIDFMLSVAQ 77
T+ + ++ + G KV++ +EI+ YA + E D+ L+ Q
Sbjct: 59 TEEAEFSHEWTTGEWKVEVNFYSEEILLDYASQVESDWPLTHGQ 102
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.316 0.136 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,023,609
Number of Sequences: 13198
Number of extensions: 41516
Number of successful extensions: 76
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 73
Number of HSP's gapped (non-prelim): 4
length of query: 186
length of database: 2,899,336
effective HSP length: 83
effective length of query: 103
effective length of database: 1,803,902
effective search space: 185801906
effective search space used: 185801906
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)