BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645219|ref|NP_207389.1| hypothetical protein
[Helicobacter pylori 26695]
         (54 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1IAL|A  Chain A, Importin Alpha, Mouse                         25  1.3
pdb|1EJL|I  Chain I, Mouse Importin Alpha-Sv40 Large T Antig...    25  1.3

>pdb|1IAL|A Chain A, Importin Alpha, Mouse
          Length = 453

 Score = 25.4 bits (54), Expect = 1.3
 Identities = 16/52 (30%), Positives = 24/52 (45%), Gaps = 2/52 (3%)

Query: 5   GLILSLAAILIA--FKKPEKENWAFGILMVVWLVELIIFIAHSSSVLPNMNL 54
           GL+  L  +L    FK  ++  WA         VE I+++ H   + P MNL
Sbjct: 334 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNL 385



>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
           Complex
 pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
 pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
           Alpha(70-529) Complex
          Length = 460

 Score = 25.4 bits (54), Expect = 1.3
 Identities = 16/52 (30%), Positives = 24/52 (45%), Gaps = 2/52 (3%)

Query: 5   GLILSLAAILIA--FKKPEKENWAFGILMVVWLVELIIFIAHSSSVLPNMNL 54
           GL+  L  +L    FK  ++  WA         VE I+++ H   + P MNL
Sbjct: 308 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNL 359



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.330    0.143    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 270,969
Number of Sequences: 13198
Number of extensions: 6166
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 2
length of query: 54
length of database: 2,899,336
effective HSP length: 30
effective length of query: 24
effective length of database: 2,503,396
effective search space: 60081504
effective search space used: 60081504
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.7 bits)