BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645220|ref|NP_207390.1| hypothetical protein
[Helicobacter pylori 26695]
(490 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1LNS|A Chain A, Crystal Structure Analysis Of The X-Pro... 30 0.61
pdb|1IRX|B Chain B, Crystal Structure Of Class I Lysyl-Trna... 26 8.8
pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botuli... 26 8.8
>pdb|1LNS|A Chain A, Crystal Structure Analysis Of The X-Prolyl Dipeptidyl
Aminopeptidase From Lactococcus Lactis
Length = 763
Score = 30.0 bits (66), Expect = 0.61
Identities = 34/116 (29%), Positives = 46/116 (39%), Gaps = 14/116 (12%)
Query: 178 PVRFSWNLKESVWSMENW----DHLKFPRSVLGRRDVGEPLKLSALPKDNDYERSPLE-I 232
PV N K+ VW+M N +K P LG+ V S DN+Y+ +
Sbjct: 532 PVILQENSKDQVWTMMNDFGANTQIKLP---LGKTAV------SFAQFDNNYDDETFKKY 582
Query: 233 TKTLKIGKKEELFLKLNGAITDLSFNEDKAILTTENQGLYLVSNDLKTIHSHMVLD 288
+K + KK+ K N A+ DL I L L ND K S +LD
Sbjct: 583 SKDFNVFKKDLFENKANEAVIDLELPSMLTINGPVELELRLKLNDTKGFLSAQILD 638
>pdb|1IRX|B Chain B, Crystal Structure Of Class I Lysyl-Trna Synthetase
pdb|1IRX|A Chain A, Crystal Structure Of Class I Lysyl-Trna Synthetase
Length = 523
Score = 26.2 bits (56), Expect = 8.8
Identities = 22/79 (27%), Positives = 38/79 (47%), Gaps = 5/79 (6%)
Query: 342 SFDEVERSRLKTSRAKNYYVSVARRGAKFTYLISAPNKRYKDLIIISMRNSDK--QVHGE 399
S ++VER +L+ + A+N+ A KF+ L P + + +M + + H E
Sbjct: 403 SKEDVERVKLRINLARNWVKKYAPEDVKFSILEKPPEVEVSEDVREAMNEVAEWLENHEE 462
Query: 400 FLLELGNAKLKE---KRGL 415
F +E N L E +RG+
Sbjct: 463 FSVEEFNNILFEVAKRRGI 481
>pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With Doxorubicin
pdb|1EPW|A Chain A, Crystal Structure Of Clostridium Neurotoxin Type B
pdb|1F31|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With A Trisaccharide
Length = 1290
Score = 26.2 bits (56), Expect = 8.8
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 10/104 (9%)
Query: 224 DYERSPLEITKTLKIGKKEELFLKLNGAITDLSFNE-DKAILTTENQGLYLVSNDLKTIH 282
+YE+S ++ K LK +L + N I FN+ + IL L N+L +
Sbjct: 821 EYEKS--KVNKYLKTIMPFDLSIYTNDTILIEMFNKYNSEILNNIILNLRYKDNNLIDL- 877
Query: 283 SHMVLDSYYSATVGSFVGADFNEDENIVIMGNNKTSVEITPNKN 326
S Y A V + G + N+ + + + + +T N+N
Sbjct: 878 ------SGYGAKVEVYDGVELNDKNQFKLTSSANSKIRVTQNQN 915
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.140 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,769,067
Number of Sequences: 13198
Number of extensions: 116692
Number of successful extensions: 212
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 212
Number of HSP's gapped (non-prelim): 3
length of query: 490
length of database: 2,899,336
effective HSP length: 92
effective length of query: 398
effective length of database: 1,685,120
effective search space: 670677760
effective search space used: 670677760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)