BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645221|ref|NP_207391.1| hypothetical protein
[Helicobacter pylori 26695]
(192 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1INL|C Chain C, Crystal Structure Of Spermidine Synthas... 28 0.68
pdb|1POW|A Chain A, Pyruvate Oxidase (E.C.1.2.3.3) (Wild Ty... 27 1.2
pdb|1POX|A Chain A, Pyruvate Oxidase (E.C.1.2.3.3) Mutant W... 27 1.2
pdb|1IBV|B Chain B, Structure Of The D53,54n Mutant Of Hist... 24 9.8
pdb|1PYA|B Chain B, Pyruvoyl-Dependent Histidine Decarboxyl... 24 9.8
pdb|1JC5|B Chain B, Crystal Structure Of Native Methylmalon... 24 9.8
>pdb|1INL|C Chain C, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1JQ3|C Chain C, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1JQ3|A Chain A, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1JQ3|D Chain D, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1INL|B Chain B, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1JQ3|B Chain B, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1INL|A Chain A, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1INL|D Chain D, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
Length = 296
Score = 28.1 bits (61), Expect = 0.68
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 109 MFIQMTQPIYDSLMNVDRLGIYINPNNEEVFAL 141
+F++M + IY ++ R+ I+ NP+ VFAL
Sbjct: 30 LFMKMNRVIYSGQSDIQRIDIFENPDLGVVFAL 62
>pdb|1POW|A Chain A, Pyruvate Oxidase (E.C.1.2.3.3) (Wild Type)
pdb|1POW|B Chain B, Pyruvate Oxidase (E.C.1.2.3.3) (Wild Type)
Length = 585
Score = 27.3 bits (59), Expect = 1.2
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 64 GKKTEEIEK-IATKRATIRVAQNIVHKLKEAYLSKTNRIKQKITNEMFIQ 112
GK+ E++ K + + A+ IV AYL NR+ QK NE Q
Sbjct: 219 GKELEQLSKTLKIPLMSTYPAKGIVADRYPAYLGSANRVAQKPANEALAQ 268
>pdb|1POX|A Chain A, Pyruvate Oxidase (E.C.1.2.3.3) Mutant With Pro 178
Replaced By Ser, Ser 188 Replaced By Asn, And Ala 458
Replaced By Val (P178s,S188n,A458v)
pdb|1POX|B Chain B, Pyruvate Oxidase (E.C.1.2.3.3) Mutant With Pro 178
Replaced By Ser, Ser 188 Replaced By Asn, And Ala 458
Replaced By Val (P178s,S188n,A458v)
Length = 585
Score = 27.3 bits (59), Expect = 1.2
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 64 GKKTEEIEK-IATKRATIRVAQNIVHKLKEAYLSKTNRIKQKITNEMFIQ 112
GK+ E++ K + + A+ IV AYL NR+ QK NE Q
Sbjct: 219 GKELEQLSKTLKIPLMSTYPAKGIVADRYPAYLGSANRVAQKPANEALAQ 268
>pdb|1IBV|B Chain B, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
Bound With Histidine Methyl Ester At-170 C
pdb|1IBV|D Chain D, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
Bound With Histidine Methyl Ester At-170 C
pdb|1IBV|F Chain F, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
Bound With Histidine Methyl Ester At-170 C
pdb|1IBT|B Chain B, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
At-170 C
pdb|1IBT|D Chain D, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
At-170 C
pdb|1IBT|F Chain F, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
At-170 C
pdb|1HQ6|B Chain B, Structure Of Pyruvoyl-Dependent Histidine Decarboxylase At
Ph 8
pdb|1HQ6|D Chain D, Structure Of Pyruvoyl-Dependent Histidine Decarboxylase At
Ph 8
pdb|1IBU|B Chain B, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
At 25 C
pdb|1IBU|D Chain D, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
At 25 C
pdb|1IBU|F Chain F, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
At 25 C
pdb|1IBW|B Chain B, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
Bound With Histidine Methyl Ester At 25 C
pdb|1IBW|D Chain D, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
Bound With Histidine Methyl Ester At 25 C
pdb|1IBW|F Chain F, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
Bound With Histidine Methyl Ester At 25 C
Length = 229
Score = 24.3 bits (51), Expect = 9.8
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 116 PIYDSLMNVDRLGIYINPNNEEVFALVRARGFDKDALSEGLHKMSLDNQA 165
P DS M V+ G++ PN +E+ + R + A+++ + + D A
Sbjct: 107 PTKDSSMFVEDAGVWETPNEDELLEYLEGR---RKAMAKSIAECGQDAHA 153
>pdb|1PYA|B Chain B, Pyruvoyl-Dependent Histidine Decarboxylase (L-Histidine
Carboxylase) (E.C.4.1.1.22)
pdb|1PYA|D Chain D, Pyruvoyl-Dependent Histidine Decarboxylase (L-Histidine
Carboxylase) (E.C.4.1.1.22)
pdb|1PYA|F Chain F, Pyruvoyl-Dependent Histidine Decarboxylase (L-Histidine
Carboxylase) (E.C.4.1.1.22)
Length = 228
Score = 24.3 bits (51), Expect = 9.8
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 116 PIYDSLMNVDRLGIYINPNNEEVFALVRARGFDKDALSEGLHKMSLDNQA 165
P DS M V+ G++ PN +E+ + R + A+++ + + D A
Sbjct: 106 PTKDSSMFVEDAGVWETPNEDELLEYLEGR---RKAMAKSIAECGQDAHA 152
>pdb|1JC5|B Chain B, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|A Chain A, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|C Chain C, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|D Chain D, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|E Chain E, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|F Chain F, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
Length = 148
Score = 24.3 bits (51), Expect = 9.8
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 7 LKSKQLFLCGLGVLMLQACTCPNTSQRNSFLQDVPYWMLQNRSEYITQGV 56
+ ++ LF+C V A CP+ + + + Q+ W +R E QGV
Sbjct: 1 MSNEDLFICIDHV----AYACPDADEASKYYQETFGWHELHREENPEQGV 46
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.134 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 976,228
Number of Sequences: 13198
Number of extensions: 34651
Number of successful extensions: 61
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 58
Number of HSP's gapped (non-prelim): 6
length of query: 192
length of database: 2,899,336
effective HSP length: 83
effective length of query: 109
effective length of database: 1,803,902
effective search space: 196625318
effective search space used: 196625318
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)