BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644691|ref|NP_206861.1| hypothetical protein
[Helicobacter pylori 26695]
         (189 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1KLG|D  Chain D, Crystal Structure Of Hla-Dr1TPI(23-37, ...    30  0.17
pdb|1GUP|A  Chain A, Structure Of Nucleotidyltransferase Com...    25  7.3
pdb|1HXP|A  Chain A, Nucleotide Transferase >gi|1943511|pdb|...    25  7.3
pdb|1HXQ|A  Chain A, The Structure Of Nucleotidylated Galact...    25  7.3
pdb|1HXQ|B  Chain B, The Structure Of Nucleotidylated Galact...    25  7.3

>pdb|1KLG|D Chain D, Crystal Structure Of Hla-Dr1TPI(23-37, Thr28-->ile Mutant)
           Complexed With Staphylococcal Enterotoxin C3 Variant 3b2
           (Sec3-3b2)
 pdb|1KLU|D Chain D, Crystal Structure Of Hla-Dr1TPI(23-37) Complexed With
           Staphylococcal Enterotoxin C3 Variant 3b2 (Sec3-3b2)
          Length = 239

 Score = 30.0 bits (66), Expect = 0.17
 Identities = 17/55 (30%), Positives = 27/55 (48%), Gaps = 1/55 (1%)

Query: 84  DRKLVVALVEALEGFKDWNLSLKIEDKRSNSLGNGTKKLLTNADLGSDYKTIVID 138
           D  +    V++++ F  W+L   I DK+  +  +  K  L N DL   YK  V+D
Sbjct: 30  DHYVSATKVKSVDSFFKWDLIYNISDKKLKNY-DKVKTELLNEDLAKKYKDEVVD 83



>pdb|1GUP|A Chain A, Structure Of Nucleotidyltransferase Complexed With
           Udp-Galactose
 pdb|1GUQ|A Chain A, Structure Of Nucleotidyltransferase Complexed With
           Udp-Glucose
 pdb|1GUP|B Chain B, Structure Of Nucleotidyltransferase Complexed With
           Udp-Galactose
 pdb|1GUP|C Chain C, Structure Of Nucleotidyltransferase Complexed With
           Udp-Galactose
 pdb|1GUP|D Chain D, Structure Of Nucleotidyltransferase Complexed With
           Udp-Galactose
 pdb|1GUQ|B Chain B, Structure Of Nucleotidyltransferase Complexed With
           Udp-Glucose
 pdb|1GUQ|C Chain C, Structure Of Nucleotidyltransferase Complexed With
           Udp-Glucose
 pdb|1GUQ|D Chain D, Structure Of Nucleotidyltransferase Complexed With
           Udp-Glucose
          Length = 348

 Score = 24.6 bits (52), Expect = 7.3
 Identities = 7/13 (53%), Positives = 12/13 (91%)

Query: 172 GSIRISGDKKPDF 184
           G++R++GDK PD+
Sbjct: 57  GNVRVTGDKNPDY 69



>pdb|1HXP|A Chain A, Nucleotide Transferase
 pdb|1HXP|B Chain B, Nucleotide Transferase
          Length = 348

 Score = 24.6 bits (52), Expect = 7.3
 Identities = 7/13 (53%), Positives = 12/13 (91%)

Query: 172 GSIRISGDKKPDF 184
           G++R++GDK PD+
Sbjct: 57  GNVRVTGDKNPDY 69



>pdb|1HXQ|A Chain A, The Structure Of Nucleotidylated Galactose-1-Phosphate
           Uridylyltransferase From Escherichia Coli At 1.86
           Angstroms Resolution
          Length = 348

 Score = 24.6 bits (52), Expect = 7.3
 Identities = 7/13 (53%), Positives = 12/13 (91%)

Query: 172 GSIRISGDKKPDF 184
           G++R++GDK PD+
Sbjct: 57  GNVRVTGDKNPDY 69



>pdb|1HXQ|B Chain B, The Structure Of Nucleotidylated Galactose-1-Phosphate
           Uridylyltransferase From Escherichia Coli At 1.86
           Angstroms Resolution
          Length = 348

 Score = 24.6 bits (52), Expect = 7.3
 Identities = 7/13 (53%), Positives = 12/13 (91%)

Query: 172 GSIRISGDKKPDF 184
           G++R++GDK PD+
Sbjct: 57  GNVRVTGDKNPDY 69



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.316    0.137    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,145,130
Number of Sequences: 13198
Number of extensions: 46739
Number of successful extensions: 84
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 80
Number of HSP's gapped (non-prelim): 5
length of query: 189
length of database: 2,899,336
effective HSP length: 83
effective length of query: 106
effective length of database: 1,803,902
effective search space: 191213612
effective search space used: 191213612
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)