BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645230|ref|NP_207400.1| hypothetical protein
[Helicobacter pylori 26695]
(477 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1EK9|A Chain A, 2.1a X-Ray Structure Of Tolc: An Integr... 52 1e-07
pdb|2RIG| Interferon-Gamma 42 2e-04
pdb|1FYH|A Chain A, 1:1 Complex Between An Interferon Gamma... 33 0.053
pdb|1EKU|B Chain B, Crystal Structure Of A Biologically Act... 33 0.091
pdb|1HIG|A Chain A, Interferon-Gamma >gi|229989|pdb|1HIG|B ... 32 0.20
pdb|1FG9|A Chain A, 3:1 Complex Of Interferon-Gamma Recepto... 32 0.20
pdb|1CBY| Delta-Endotoxin 31 0.35
pdb|1HDS|B Chain B, Hemoglobin (Sickle Cell) >gi|229977|pdb... 31 0.35
pdb|1G5Z|A Chain A, Crystal Structure Of Lyme Disease Antig... 30 0.77
pdb|1DLJ|A Chain A, The First Structure Of Udp-Glucose Dehy... 29 1.0
pdb|1DLI|A Chain A, The First Structure Of Udp-Glucose Dehy... 29 1.0
pdb|1HZD|A Chain A, Crystal Structure Of Human Auh Protein,... 29 1.3
pdb|1JTG|B Chain B, Crystal Structure Of Tem-1 Beta-Lactama... 28 2.9
pdb|1EMT|H Chain H, Fab Antibody Fragment Of An C60 Antiful... 27 5.0
pdb|231L| T4 Lysozyme Mutant M106k 27 6.5
pdb|2BTV|B Chain B, Atomic Model For Bluetongue Virus (Btv)... 27 6.5
pdb|1TLA| Lysozyme (E.C.3.2.1.17) (Mutant With Cys 54 Rep... 26 8.5
pdb|1RFB|A Chain A, Interferon Gamma (Bovine, Recombinant) ... 26 8.5
pdb|1D9C|A Chain A, Bovine Interferon-Gamma At 2.0 Angstrom... 26 8.5
>pdb|1EK9|A Chain A, 2.1a X-Ray Structure Of Tolc: An Integral Outer Membrane
Protein And Efflux Pump Component From Escherichia Coli
pdb|1EK9|B Chain B, 2.1a X-Ray Structure Of Tolc: An Integral Outer Membrane
Protein And Efflux Pump Component From Escherichia Coli
pdb|1EK9|C Chain C, 2.1a X-Ray Structure Of Tolc: An Integral Outer Membrane
Protein And Efflux Pump Component From Escherichia Coli
Length = 428
Score = 52.4 bits (124), Expect = 1e-07
Identities = 87/386 (22%), Positives = 156/386 (39%), Gaps = 56/386 (14%)
Query: 117 AKAMFLPTLN--ASYNFKNEARDTPEYKHYNTQQLQAQVTLNVFNGFS-DVNNVKEKSAT 173
A++ LP L A Y + N RD N Q+T ++F+ ++EK+A
Sbjct: 34 ARSPLLPQLGLGADYTYSNGYRDANGINS-NATSASLQLTQSIFDXSKWRALTLQEKAAG 92
Query: 174 YRSNVANLEYSRQSVYLQVVQQYYEYFNNLARMIALQKKLEQIKTDIKRVTKLYDKGLTT 233
+ + +Q++ L Y+ N + + Q + E I + + T+ ++ GL
Sbjct: 93 IQD--VTYQTDQQTLILNTATAYFNVLNAIDVLSYTQAQKEAIYRQLDQTTQRFNVGLVA 150
Query: 234 IDDLQSLKAQ------GNLSEYDILDMQFALEQNR-LTLEYLTNLSVKNLKKTTIDAPN- 285
I D+Q+ +AQ L+ + LD A+EQ R +T Y L+ N++ D P
Sbjct: 151 ITDVQNARAQYDTVLANELTARNNLDN--AVEQLRQITGNYYPELAALNVENFKTDKPQP 208
Query: 286 ---------------LQLRERQDLVSLREQISAIRYQNKQLNYYPKIDVFDSWLFWIQKP 330
LQ R QDL REQI + Q + P +D+ S I
Sbjct: 209 VNALLKEAEKRNLSLLQARLSQDLA--REQI-----RQAQDGHLPTLDLTAS--TGISDT 259
Query: 331 AYA----TGRFGNFYPGQ---QNTAGVTATLNIFDDIGLSLQKQSIMLGQLANEKNL--A 381
+Y+ G G Y QN G++ +L I+ ++ Q + + + L A
Sbjct: 260 SYSGSKTRGAAGTQYDDSNXGQNKVGLSFSLPIYQGGXVNSQVKQAQYNFVGASEQLESA 319
Query: 382 YKKLEQEKDEQLYR-----KSLDIARAKIESSKASLDAANLSFANIKRKYDANLVDFTTY 436
++ + Q S++ + + S+++SLDA + ++ + +++D TT
Sbjct: 320 HRSVVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAXEAGY-SVGTRTIVDVLDATTT 378
Query: 437 LRGLTTRFDAEVAYNLALNNYEVQKA 462
L A YN +N ++ A
Sbjct: 379 LYNAKQEL-ANARYNYLINQLNIKSA 403
>pdb|2RIG| Interferon-Gamma
Length = 144
Score = 41.6 bits (96), Expect = 2e-04
Identities = 31/97 (31%), Positives = 50/97 (50%), Gaps = 7/97 (7%)
Query: 182 EYSRQSVYLQVVQQYYEYFNNLARMIALQKKLEQIKTDIKRVTKLYDKGLTTIDDLQSLK 241
E + + Q+V Y++ F+NL ++K +E IK DI K ++ LT +DD Q+L
Sbjct: 39 ESDNKIIQSQIVSFYFKLFDNLKDHEVIKKSMESIKEDI--FVKFFNSNLTKMDDFQNLT 96
Query: 242 AQGNLSEYDILDMQFALEQNRLTLEYLTNLSVKNLKK 278
+S D L + A+ + L +L+ S NLKK
Sbjct: 97 ---RISVDDRLVQRKAVSELSNVLNFLSPKS--NLKK 128
>pdb|1FYH|A Chain A, 1:1 Complex Between An Interferon Gamma Single-Chain
Variant And Its Receptor
pdb|1FYH|D Chain D, 1:1 Complex Between An Interferon Gamma Single-Chain
Variant And Its Receptor
Length = 258
Score = 33.5 bits (75), Expect = 0.053
Identities = 44/213 (20%), Positives = 86/213 (39%), Gaps = 33/213 (15%)
Query: 61 SPKETATTINQEI-AKYHEKSDKAALGLYELLKGATTNLSLQAQELSVKQAMKNHTIAKA 119
S +++ TI +++ K+ + K +L + T+L++Q + + + +
Sbjct: 66 SIQKSVETIKEDMNVKFFNSNKKKRDDFEKLTNYSVTDLNVQRKAID--------ELIQV 117
Query: 120 MFLPTLNASYNFKNEARDTPEYKHYNTQQLQAQVTLNVFNGFSDVNNVKEKSATYRSNVA 179
M N S F EA + +Y + + TL F G + N KE+S
Sbjct: 118 MAELGANVSGEFVKEAENLKKYFNAGHSDVADNGTL--FLGI--LKNWKEES-------- 165
Query: 180 NLEYSRQSVYLQVVQQYYEYFNNLARMIALQKKLEQIKTDIKRVTKLYDKGLTTIDDLQS 239
R+ + Q+V Y++ F N ++QK +E IK D+ K ++ DD +
Sbjct: 166 ----DRKIMQSQIVSFYFKLFKNFKDDQSIQKSVETIKEDMN--VKFFNSNKKKRDDFE- 218
Query: 240 LKAQGNLSEYDILDMQFALEQNRLTLEYLTNLS 272
L+ Y + D+ + ++ + LS
Sbjct: 219 -----KLTNYSVTDLNVQRKAIHELIQVMAELS 246
Score = 31.2 bits (69), Expect = 0.27
Identities = 23/106 (21%), Positives = 45/106 (41%), Gaps = 8/106 (7%)
Query: 182 EYSRQSVYLQVVQQYYEYFNNLARMIALQKKLEQIKTDIKRVTKLYDKGLTTIDDLQSLK 241
E R+ + Q+V Y++ F N ++QK +E IK D+ K ++ DD +
Sbjct: 40 ESDRKIMQSQIVSFYFKLFKNFKDDQSIQKSVETIKEDMN--VKFFNSNKKKRDDFE--- 94
Query: 242 AQGNLSEYDILDMQFALEQNRLTLEYLTNLSVKNLKKTTIDAPNLQ 287
L+ Y + D+ + ++ + L + +A NL+
Sbjct: 95 ---KLTNYSVTDLNVQRKAIDELIQVMAELGANVSGEFVKEAENLK 137
>pdb|1EKU|B Chain B, Crystal Structure Of A Biologically Active Single Chain
Mutant Of Human Ifn-Gamma
pdb|1EKU|A Chain A, Crystal Structure Of A Biologically Active Single Chain
Mutant Of Human Ifn-Gamma
Length = 265
Score = 32.7 bits (73), Expect = 0.091
Identities = 42/214 (19%), Positives = 86/214 (39%), Gaps = 33/214 (15%)
Query: 61 SPKETATTINQEI-AKYHEKSDKAALGLYELLKGATTNLSLQAQELS-VKQAMKNHTIAK 118
S +++ TI +++ K+ + K +L + T+L++Q + + + Q M + +
Sbjct: 66 SIQKSVETIKEDMNVKFFNSNKKKRDDFEKLTNYSVTDLNVQRKAIDELIQVMAEFSTEE 125
Query: 119 AMFLPTLNASYNFKNEARDTPEYKHYNTQQLQAQVTLNVFNGFSDVNNVKEKSATYRSNV 178
P + + N K K++N +F G + N KE+S
Sbjct: 126 QQEGPYVKEAENLK---------KYFNAGHSDVADNGTLFLGI--LKNWKEES------- 167
Query: 179 ANLEYSRQSVYLQVVQQYYEYFNNLARMIALQKKLEQIKTDIKRVTKLYDKGLTTIDDLQ 238
R+ + Q+V Y++ F N ++QK +E IK D+ K ++ DD +
Sbjct: 168 -----DRKIMQSQIVSFYFKLFKNFKDDQSIQKSVETIKEDMN--VKFFNSNKKKRDDFE 220
Query: 239 SLKAQGNLSEYDILDMQFALEQNRLTLEYLTNLS 272
L+ Y + D+ + ++ + LS
Sbjct: 221 ------KLTNYSVTDLNVQRKAIHELIQVMAELS 248
Score = 30.8 bits (68), Expect = 0.35
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 182 EYSRQSVYLQVVQQYYEYFNNLARMIALQKKLEQIKTDIKRVTKLYDKGLTTIDDLQSLK 241
E R+ + Q+V Y++ F N ++QK +E IK D+ K ++ DD +
Sbjct: 40 ESDRKIMQSQIVSFYFKLFKNFKDDQSIQKSVETIKEDMN--VKFFNSNKKKRDDFE--- 94
Query: 242 AQGNLSEYDILDM 254
L+ Y + D+
Sbjct: 95 ---KLTNYSVTDL 104
>pdb|1HIG|A Chain A, Interferon-Gamma
pdb|1HIG|B Chain B, Interferon-Gamma
pdb|1HIG|C Chain C, Interferon-Gamma
pdb|1HIG|D Chain D, Interferon-Gamma
Length = 138
Score = 31.6 bits (70), Expect = 0.20
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 182 EYSRQSVYLQVVQQYYEYFNNLARMIALQKKLEQIKTDIKRVTKLYDKGLTTIDDLQSLK 241
E R+ + Q+V Y++ F N ++QK +E IK D+ K ++ DD +
Sbjct: 39 ESDRKIMQSQIVSFYFKLFKNFKDDQSIQKSVETIKEDMN--VKFFNSNKKKRDDFE--- 93
Query: 242 AQGNLSEYDILDMQFALEQNRLTLEYLTNLS 272
L+ Y + D+ + ++ + LS
Sbjct: 94 ---KLTNYSVTDLNVQRKAIHELIQVMAELS 121
>pdb|1FG9|A Chain A, 3:1 Complex Of Interferon-Gamma Receptor With Interferon-
Gamma Dimer
pdb|1FG9|B Chain B, 3:1 Complex Of Interferon-Gamma Receptor With Interferon-
Gamma Dimer
Length = 134
Score = 31.6 bits (70), Expect = 0.20
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 182 EYSRQSVYLQVVQQYYEYFNNLARMIALQKKLEQIKTDIKRVTKLYDKGLTTIDDLQSLK 241
E R+ + Q+V Y++ F N ++QK +E IK D+ K ++ DD +
Sbjct: 40 ESDRKIMQSQIVSFYFKLFKNFKDDQSIQKSVETIKEDMN--VKFFNSNKKKRDDFE--- 94
Query: 242 AQGNLSEYDILDMQFALEQNRLTLEYLTNLS 272
L+ Y + D+ + ++ + LS
Sbjct: 95 ---KLTNYSVTDLNVQRKAIHELIQVMAELS 122
>pdb|1CBY| Delta-Endotoxin
Length = 259
Score = 30.8 bits (68), Expect = 0.35
Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 13/104 (12%)
Query: 321 DSWLFWIQKPAYATGRFGNFYPGQQN--TAGVTATLNIFDDIGLSLQKQSIMLGQLANEK 378
++W+FW A+ T + N QN T V A L + ++ + ++KQ ++ + +
Sbjct: 152 EAWIFWHSLSAHNTSYYYNILFSIQNEDTGAVMAVLPLAFEVSVDVEKQKVLFFTIKDSA 211
Query: 379 NLAYKKLEQEKDEQLYRKSLDIARAKIESSKASLDAANLSFANI 422
K K+L + +A S+ +D N++ N+
Sbjct: 212 RYEVK-----------MKALTLVQALHSSNAPIVDIFNVNNYNL 244
>pdb|1HDS|B Chain B, Hemoglobin (Sickle Cell)
pdb|1HDS|D Chain D, Hemoglobin (Sickle Cell)
Length = 145
Score = 30.8 bits (68), Expect = 0.35
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 194 QQYYEYFNNLARMIALQKKLEQIKTDIKRVTKLYDKGLTTIDDLQSLKAQ 243
Q+++++F NL+ A+ ++K KRV + +GL +DDL+ AQ
Sbjct: 38 QRFFQHFGNLSSAGAVMNN-PKVKAHGKRVLDAFTQGLKHLDDLKGAFAQ 86
>pdb|1G5Z|A Chain A, Crystal Structure Of Lyme Disease Antigen Outer Surface
Protein C (Ospc) From Borrelia Burgdorferi Strain N40
Length = 164
Score = 29.6 bits (65), Expect = 0.77
Identities = 23/67 (34%), Positives = 33/67 (48%), Gaps = 2/67 (2%)
Query: 49 TSSLEATPSFLSSPKETATTINQEIAKYHEKSDKAALGLYELLKGATTNLSLQAQELSVK 108
T+ L++ + L T + I K H DK A L +L K A NLS AQ+ ++K
Sbjct: 95 TNKLKSEHAVLGLDNLTDDNAQRAILKKHANKDKGAAELEKLFK-AVENLSKAAQD-TLK 152
Query: 109 QAMKNHT 115
A+K T
Sbjct: 153 NAVKELT 159
>pdb|1DLJ|A Chain A, The First Structure Of Udp-Glucose Dehydrogenase (Udpgdh)
Reveals The Catalytic Residues Necessary For The
Two-Fold Oxidation
Length = 402
Score = 29.3 bits (64), Expect = 1.0
Identities = 31/145 (21%), Positives = 67/145 (45%), Gaps = 15/145 (10%)
Query: 27 PDEIKQILNNYSHKNLKLIDPPTSSLEATPSFLSSPKETATTINQEIAKYHEKSDKAALG 86
P + KQ+L NY++ LI+ SS S+++ K+ + + ++S +G
Sbjct: 262 PKDTKQLLANYNNIPQTLIEAIVSSNNVRKSYIA--KQIINVLKE------QESPVKVVG 313
Query: 87 LYELLKGATTNLSLQAQELSVKQAMKNHTIAKAMFLPTLNASYNFKNEARDTPEYKHYNT 146
+Y L+ + ++ ++ V +K+ I ++ P LN K E+ D + +
Sbjct: 314 VYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLN-----KLESEDQSVLVN-DL 367
Query: 147 QQLQAQVTLNVFNGF-SDVNNVKEK 170
+ + Q + V N + +++ +VK K
Sbjct: 368 ENFKKQANIIVTNRYDNELQDVKNK 392
>pdb|1DLI|A Chain A, The First Structure Of Udp-Glucose Dehydrogenase (Udpgdh)
Reveals The Catalytic Residues Necessary For The
Two-Fold Oxidation
Length = 402
Score = 29.3 bits (64), Expect = 1.0
Identities = 31/145 (21%), Positives = 67/145 (45%), Gaps = 15/145 (10%)
Query: 27 PDEIKQILNNYSHKNLKLIDPPTSSLEATPSFLSSPKETATTINQEIAKYHEKSDKAALG 86
P + KQ+L NY++ LI+ SS S+++ K+ + + ++S +G
Sbjct: 262 PKDTKQLLANYNNIPQTLIEAIVSSNNVRKSYIA--KQIINVLKE------QESPVKVVG 313
Query: 87 LYELLKGATTNLSLQAQELSVKQAMKNHTIAKAMFLPTLNASYNFKNEARDTPEYKHYNT 146
+Y L+ + ++ ++ V +K+ I ++ P LN K E+ D + +
Sbjct: 314 VYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLN-----KLESEDQSVLVN-DL 367
Query: 147 QQLQAQVTLNVFNGF-SDVNNVKEK 170
+ + Q + V N + +++ +VK K
Sbjct: 368 ENFKKQANIIVTNRYDNELQDVKNK 392
>pdb|1HZD|A Chain A, Crystal Structure Of Human Auh Protein, An Rna-Binding
Homologue Of Enoyl-Coa Hydratase
pdb|1HZD|C Chain C, Crystal Structure Of Human Auh Protein, An Rna-Binding
Homologue Of Enoyl-Coa Hydratase
pdb|1HZD|E Chain E, Crystal Structure Of Human Auh Protein, An Rna-Binding
Homologue Of Enoyl-Coa Hydratase
pdb|1HZD|B Chain B, Crystal Structure Of Human Auh Protein, An Rna-Binding
Homologue Of Enoyl-Coa Hydratase
pdb|1HZD|D Chain D, Crystal Structure Of Human Auh Protein, An Rna-Binding
Homologue Of Enoyl-Coa Hydratase
pdb|1HZD|F Chain F, Crystal Structure Of Human Auh Protein, An Rna-Binding
Homologue Of Enoyl-Coa Hydratase
Length = 272
Score = 28.9 bits (63), Expect = 1.3
Identities = 20/65 (30%), Positives = 34/65 (51%), Gaps = 6/65 (9%)
Query: 360 IGLSLQKQSIMLGQLANEKN-----LAYKKLEQEKD-EQLYRKSLDIARAKIESSKASLD 413
IG+SL K+ I ++ + K L LEQ ++ + YRK+LD+AR + ++
Sbjct: 161 IGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMR 220
Query: 414 AANLS 418
A L+
Sbjct: 221 VAKLA 225
>pdb|1JTG|B Chain B, Crystal Structure Of Tem-1 Beta-Lactamase BETA-Lactamase
Inhibitor Protein Complex
pdb|1JTG|D Chain D, Crystal Structure Of Tem-1 Beta-Lactamase BETA-Lactamase
Inhibitor Protein Complex
Length = 165
Score = 27.7 bits (60), Expect = 2.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 337 FGNFYPGQQNTAGVTATLNIFDDIGLS 363
+ +YP +TAGVT +L+ FD G S
Sbjct: 112 WSEYYPAYPSTAGVTLSLSCFDVDGYS 138
>pdb|1EMT|H Chain H, Fab Antibody Fragment Of An C60 Antifullerene Antibody
Length = 213
Score = 26.9 bits (58), Expect = 5.0
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 322 SWLFWI-QKPAYATGRFGNFYPGQQNT 347
SW+ W+ Q+P G YPG NT
Sbjct: 32 SWMNWVKQRPGQGLKWIGRIYPGNGNT 58
>pdb|231L| T4 Lysozyme Mutant M106k
Length = 164
Score = 26.6 bits (57), Expect = 6.5
Identities = 23/87 (26%), Positives = 41/87 (46%), Gaps = 8/87 (9%)
Query: 385 LEQEKDEQLYRKSLDIA------RAKIESSKASLDAANLS--FANIKRKYDANLVDFTTY 436
+ +++ E+L+ + +D A AK++ SLDA + + +K + + FT
Sbjct: 58 ITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQKGETGVAGFTNS 117
Query: 437 LRGLTTRFDAEVAYNLALNNYEVQKAN 463
LR L + E A NLA + + Q N
Sbjct: 118 LRMLQQKRWDEAAVNLAKSRWYNQTPN 144
>pdb|2BTV|B Chain B, Atomic Model For Bluetongue Virus (Btv) Core
pdb|2BTV|A Chain A, Atomic Model For Bluetongue Virus (Btv) Core
Length = 901
Score = 26.6 bits (57), Expect = 6.5
Identities = 27/102 (26%), Positives = 47/102 (45%), Gaps = 6/102 (5%)
Query: 167 VKEKSATYRSNVANLEYSRQSVYLQVVQQYYEYFNNLARMIALQKKLEQIKTDIKRVTKL 226
VK S ++R V SR V V YYE + + +I + + T IK+V +
Sbjct: 83 VKVPSTSFRHIVTQ---SRDRVLR--VDTYYEEMSQVGDVITEDEPEKFYSTIIKKVRFI 137
Query: 227 YDKGLTTIDDLQSLKAQG-NLSEYDILDMQFALEQNRLTLEY 267
KG + D+ + +G ++E ++L ++F LT E+
Sbjct: 138 RGKGSFILHDIPARDHRGMEVAEPEVLGVEFKNVLPVLTAEH 179
>pdb|1TLA| Lysozyme (E.C.3.2.1.17) (Mutant With Cys 54 Replaced By Thr, Cys
97 Replaced By Ala, Ser 117 Replaced By Phe)
(C54t,C97a,S117f)
Length = 164
Score = 26.2 bits (56), Expect = 8.5
Identities = 22/87 (25%), Positives = 41/87 (46%), Gaps = 8/87 (9%)
Query: 385 LEQEKDEQLYRKSLDIA------RAKIESSKASLDAANLS--FANIKRKYDANLVDFTTY 436
+ +++ E+L+ + +D A AK++ SLDA + + + + + FT +
Sbjct: 58 ITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNF 117
Query: 437 LRGLTTRFDAEVAYNLALNNYEVQKAN 463
LR L + E A NLA + + Q N
Sbjct: 118 LRMLQQKRWDEAAVNLAKSRWYNQTPN 144
>pdb|1RFB|A Chain A, Interferon Gamma (Bovine, Recombinant)
pdb|1RFB|B Chain B, Interferon Gamma (Bovine, Recombinant)
Length = 119
Score = 26.2 bits (56), Expect = 8.5
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 182 EYSRQSVYLQVVQQYYEYFNNLARMIALQKKLEQIKTDI 220
E ++ + Q+V Y++ F NL +Q+ ++ IK D+
Sbjct: 39 ESDKKIIQSQIVSFYFKLFENLKDNQVIQRSMDIIKQDM 77
>pdb|1D9C|A Chain A, Bovine Interferon-Gamma At 2.0 Angstroms
pdb|1D9G|A Chain A, Bovine Interferon-Gamma At 2.9 Angstroms
pdb|1D9C|B Chain B, Bovine Interferon-Gamma At 2.0 Angstroms
pdb|1D9G|B Chain B, Bovine Interferon-Gamma At 2.9 Angstroms
Length = 121
Score = 26.2 bits (56), Expect = 8.5
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 182 EYSRQSVYLQVVQQYYEYFNNLARMIALQKKLEQIKTDI 220
E ++ + Q+V Y++ F NL +Q+ ++ IK D+
Sbjct: 39 ESDKKIIQSQIVSFYFKLFENLKDNQVIQRSMDIIKQDM 77
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.315 0.130 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,488,995
Number of Sequences: 13198
Number of extensions: 94838
Number of successful extensions: 269
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 256
Number of HSP's gapped (non-prelim): 23
length of query: 477
length of database: 2,899,336
effective HSP length: 92
effective length of query: 385
effective length of database: 1,685,120
effective search space: 648771200
effective search space used: 648771200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 56 (26.2 bits)