BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|15644640|ref|NP_206808.1| pantoate-beta-alanine ligase (panC) [Helicobacter pylori 26695] (276 letters) Database: /var/www/html/HP/blast_new/blast/db/pdbaa 13,198 sequences; 2,899,336 total letters Searching...........................done



                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1IHO|A  Chain A, Crystal Apo-Structure Of Pantothenate S...   177  2e-45
pdb|1KS2|A  Chain A, Crystal Structure Analysis Of The Rpia,...    28  0.88
pdb|1LKZ|A  Chain A, Crystal Structure Of D-Ribose-5-Phospha...    28  0.88
pdb|1FSZ|    Crystal Structure Of The Cell-Division Protein ...    27  2.6
pdb|1LM8|C  Chain C, Structure Of A Hif-1a-Pvhl-Elonginb-Elo...    25  9.7
pdb|1VCB|B  Chain B, The Vhl-Elonginc-Elonginb Structure >gi...    25  9.7

>pdb|1IHO|A Chain A, Crystal Apo-Structure Of Pantothenate Synthetase From E.
           Coli
 pdb|1IHO|B Chain B, Crystal Apo-Structure Of Pantothenate Synthetase From E.
           Coli
          Length = 283

 Score =  177 bits (448), Expect = 2e-45
 Identities = 116/285 (40%), Positives = 158/285 (54%), Gaps = 14/285 (4%)

Query: 1   MRVLETIVALREYRKSLE---ESVGFVPTMGALHKGHQSLIERSLKENSHTIVSVFVNPT 57
           M ++ET+  LR+  + L    + V  VPTMG LH GH  L++ +       +VS+FVNP 
Sbjct: 1   MLIIETLPLLRQQIRRLRMEGKRVALVPTMGNLHDGHMKLVDEAKARADVVVVSIFVNPM 60

Query: 58  QFGANEDFNAYPRPLEKDLALCEKLGVNAVFVPKIGEMYPYEAEQRLKLYAPKFLSSSLE 117
           QF   ED   YPR L++D     K  V+ VF P + E+YP   E    +  P  LS+ LE
Sbjct: 61  QFDRPEDLARYPRTLQEDCEKLNKRKVDLVFAPSVKEIYPNGTETHTYVDVPG-LSTMLE 119

Query: 118 GAMRKGHFDGVVQIVLKMFHLVNPTRAYFGKKDAQQLLIIEHLVKDLLLDIEIAPCEIVR 177
           GA R GHF GV  IV K+F+LV P  A FG+KD QQL +I  +V D+  DIEI    I+R
Sbjct: 120 GASRPGHFRGVSTIVSKLFNLVQPDIACFGEKDFQQLALIRKMVADMGFDIEIVGVPIMR 179

Query: 178 DDDNLALSSRNVYLNATQRKQALAIPKALEKIQQAIDKGEKACEKLKKL-GLEILET-LE 235
             D LALSSRN YL A QRK A  + K L  I   +  GE+  +++  + G E+ E    
Sbjct: 180 AKDGLALSSRNGYLTAEQRKIAPGLYKVLSSIADKLQAGERDLDEIITIAGQELNEKGFR 239

Query: 236 VDYLECCNHKLEPLTIIEPTNT----LILVAARVGKTRLLDNLWV 276
            D ++      +  T++E + T    +ILVAA +G  RL+DN  V
Sbjct: 240 ADDIQI----RDADTLLEVSETSKRAVILVAAWLGDARLIDNKMV 280

>pdb|1KS2|A Chain A, Crystal Structure Analysis Of The Rpia, Structural
           Genomics, Protein Ec1268.
 pdb|1KS2|B Chain B, Crystal Structure Analysis Of The Rpia, Structural
           Genomics, Protein Ec1268
          Length = 219

 Score = 28.5 bits (62), Expect = 0.88
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 208 KIQQAIDKGEKACEKLKKLGLEILETLEVDYL 239
           +I+ A+   + + EKLK LG+ + +  EVD L
Sbjct: 45  QIEGAVSSSDASTEKLKSLGIHVFDLNEVDSL 76

>pdb|1LKZ|A Chain A, Crystal Structure Of D-Ribose-5-Phosphate Isomerase (Rpia)
           From Escherichia Coli.
 pdb|1LKZ|B Chain B, Crystal Structure Of D-Ribose-5-Phosphate Isomerase (Rpia)
           From Escherichia Coli
          Length = 219

 Score = 28.5 bits (62), Expect = 0.88
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 208 KIQQAIDKGEKACEKLKKLGLEILETLEVDYL 239
           +I+ A+   + + EKLK LG+ + +  EVD L
Sbjct: 45  QIEGAVSSSDASTEKLKSLGIHVFDLNEVDSL 76

>pdb|1FSZ|   Crystal Structure Of The Cell-Division Protein Ftsz At 2.8a
           Resolution
          Length = 372

 Score = 26.9 bits (58), Expect = 2.6
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 8/81 (9%)

Query: 112 LSSSLEGAMR-KGHFDGVVQIVL-KMFHLVNPTRAYFGKKDAQQLLI------IEHLVKD 163
           + +++EG  R K H D +V I   K+F +V         K A ++LI      +E + KD
Sbjct: 170 MKNAMEGLERLKQHTDTLVVIPNEKLFEIVPNMPLKLAFKVADEVLINAVKGLVELITKD 229

Query: 164 LLLDIEIAPCEIVRDDDNLAL 184
            L++++ A  + V ++  LA+
Sbjct: 230 GLINVDFADVKAVMNNGGLAM 250

>pdb|1LM8|C Chain C, Structure Of A Hif-1a-Pvhl-Elonginb-Elonginc Complex
 pdb|1LQB|B Chain B, Crystal Structure Of A Hydroxylated Hif-1 Alpha Peptide
          Bound To The PvhlELONGIN-CELONGIN-B Complex
          Length = 96

 Score = 25.0 bits (53), Expect = 9.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 33 GHQSLIERSLKENSHTIVSVFVNPTQFGANE 63
          GH+ +++R     S TI ++   P QF  NE
Sbjct: 10 GHEFIVKREHALTSGTIKAMLSGPGQFAENE 40

>pdb|1VCB|B Chain B, The Vhl-Elonginc-Elonginb Structure
 pdb|1VCB|E Chain E, The Vhl-Elonginc-Elonginb Structure
 pdb|1VCB|H Chain H, The Vhl-Elonginc-Elonginb Structure
 pdb|1VCB|K Chain K, The Vhl-Elonginc-Elonginb Structure
          Length = 112

 Score = 25.0 bits (53), Expect = 9.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 33 GHQSLIERSLKENSHTIVSVFVNPTQFGANE 63
          GH+ +++R     S TI ++   P QF  NE
Sbjct: 26 GHEFIVKREHALTSGTIKAMLSGPGQFAENE 56

  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.320    0.138    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,480,959
Number of Sequences: 13198
Number of extensions: 56621
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 129
Number of HSP's gapped (non-prelim): 6
length of query: 276
length of database: 2,899,336
effective HSP length: 87
effective length of query: 189
effective length of database: 1,751,110
effective search space: 330959790
effective search space used: 330959790
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)