BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644692|ref|NP_206862.1| hypothetical protein
[Helicobacter pylori 26695]
(86 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1EFP|B Chain B, Electron Transfer Flavoprotein (Etf) Fr... 26 0.86
pdb|1EFV|B Chain B, Three-Dimensional Structure Of Human El... 25 1.1
pdb|1UTE|A Chain A, Pig Purple Acid Phosphatase Complexed W... 25 1.1
pdb|1QFC|A Chain A, Structure Of Rat Purple Acid Phosphatase 25 1.5
pdb|3BTA|A Chain A, Crystal Structure Of Botulinum Neurotox... 25 1.5
pdb|1QHW|A Chain A, Purple Acid Phosphatase From Rat Bone 25 1.5
pdb|1TAQ| Structure Of Taq Dna Polymerase 23 4.3
pdb|1TAU|A Chain A, Structure Of Dna Polymerase 23 4.3
pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An ... 23 4.3
pdb|1DMT|A Chain A, Structure Of Human Neutral Endopeptidas... 23 5.6
pdb|1QPW|B Chain B, Crystal Structure Determination Of Porc... 23 5.6
pdb|1HBR|D Chain D, R-State Form Of Chicken Hemoglobin D >g... 23 7.3
pdb|1BBP|A Chain A, Bilin Binding Protein (BBP) >gi|229697|... 23 7.3
pdb|1REG|X Chain X, Mol_id: 1; Molecule: T4 Rega; Chain: X,... 23 7.3
pdb|1EJF|A Chain A, Crystal Structure Of The Human Co-Chape... 22 9.5
pdb|3PGK| Phosphoglycerate Kinase (E.C.2.7.2.3) Complex W... 22 9.5
>pdb|1EFP|B Chain B, Electron Transfer Flavoprotein (Etf) From Paracoccus
Denitrificans
pdb|1EFP|D Chain D, Electron Transfer Flavoprotein (Etf) From Paracoccus
Denitrificans
Length = 252
Score = 25.8 bits (55), Expect = 0.86
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 54 LDNLKSTFNEFDEAAQEQIAWLKER 78
L N+K + N FDE A E+ LKE+
Sbjct: 28 LANVKMSMNPFDEIAVEEAIRLKEK 52
>pdb|1EFV|B Chain B, Three-Dimensional Structure Of Human Electron Transfer
Flavoprotein To 2.1 A Resolution
Length = 255
Score = 25.4 bits (54), Expect = 1.1
Identities = 14/36 (38%), Positives = 19/36 (51%)
Query: 48 DKFSEVLDNLKSTFNEFDEAAQEQIAWLKERIRVLE 83
D+ V D +K + N F E A E+ LKE+ V E
Sbjct: 25 DRTGVVTDGVKHSMNPFCEIAVEEAVRLKEKKLVKE 60
>pdb|1UTE|A Chain A, Pig Purple Acid Phosphatase Complexed With Phosphate
Length = 313
Score = 25.4 bits (54), Expect = 1.1
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 68 AQEQIAWLKERIRVLEEDY 86
A+ Q+AW+K+++ +EDY
Sbjct: 162 ARTQLAWIKKQLAAAKEDY 180
>pdb|1QFC|A Chain A, Structure Of Rat Purple Acid Phosphatase
Length = 306
Score = 25.0 bits (53), Expect = 1.5
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 68 AQEQIAWLKERIRVLEEDY 86
A+ Q++WLK+++ +EDY
Sbjct: 162 ARTQLSWLKKQLAAAKEDY 180
>pdb|3BTA|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype A
Length = 1295
Score = 25.0 bits (53), Expect = 1.5
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 1 MSRVQMDTEEVREFVGHLERFKELLREEVNSLSNHFHN 38
MS +++ EE+R F GH +F + L+E N +++N
Sbjct: 252 MSGLEVSFEELRTFGGHDAKFIDSLQE--NEFRLYYYN 287
>pdb|1QHW|A Chain A, Purple Acid Phosphatase From Rat Bone
Length = 327
Score = 25.0 bits (53), Expect = 1.5
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 68 AQEQIAWLKERIRVLEEDY 86
A+ Q++WLK+++ +EDY
Sbjct: 183 ARTQLSWLKKQLAAAKEDY 201
>pdb|1TAQ| Structure Of Taq Dna Polymerase
Length = 832
Score = 23.5 bits (49), Expect = 4.3
Identities = 14/44 (31%), Positives = 23/44 (51%)
Query: 19 ERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFN 62
E+ L EE SL NL+ + A R+K +D+LK +++
Sbjct: 201 EKTARKLLEEWGSLEALLKNLDRLKPAIREKILAHMDDLKLSWD 244
>pdb|1TAU|A Chain A, Structure Of Dna Polymerase
Length = 832
Score = 23.5 bits (49), Expect = 4.3
Identities = 14/44 (31%), Positives = 23/44 (51%)
Query: 19 ERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFN 62
E+ L EE SL NL+ + A R+K +D+LK +++
Sbjct: 201 EKTARKLLEEWGSLEALLKNLDRLKPAIREKILAHMDDLKLSWD 244
>pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An Inhibitory Fab
pdb|1CMW|A Chain A, Crystal Structure Of Taq Dna-Polymerase Shows A New
Orientation For The Structure-Specific Nuclease Domain
Length = 832
Score = 23.5 bits (49), Expect = 4.3
Identities = 14/44 (31%), Positives = 23/44 (51%)
Query: 19 ERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFN 62
E+ L EE SL NL+ + A R+K +D+LK +++
Sbjct: 201 EKTARKLLEEWGSLEALLKNLDRLKPAIREKILAHMDDLKLSWD 244
>pdb|1DMT|A Chain A, Structure Of Human Neutral Endopeptidase Complexed With
Phosphoramidon
Length = 696
Score = 23.1 bits (48), Expect = 5.6
Identities = 18/64 (28%), Positives = 28/64 (43%)
Query: 16 GHLERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWL 75
G++E L E H +E R+ F + LD+L E + A+E+ +
Sbjct: 363 GNMENAVGRLYVEAAFAGESKHVVEDLIAQIREVFIQTLDDLTWMDAETKKRAEEKALAI 422
Query: 76 KERI 79
KERI
Sbjct: 423 KERI 426
>pdb|1QPW|B Chain B, Crystal Structure Determination Of Porcine Hemoglobin At
1.8a Resolution
pdb|1QPW|D Chain D, Crystal Structure Determination Of Porcine Hemoglobin At
1.8a Resolution
pdb|2PGH|B Chain B, Hemoglobin (Aquomet)
pdb|2PGH|D Chain D, Hemoglobin (Aquomet)
Length = 146
Score = 23.1 bits (48), Expect = 5.6
Identities = 12/29 (41%), Positives = 16/29 (54%)
Query: 54 LDNLKSTFNEFDEAAQEQIAWLKERIRVL 82
LDNLK TF + E +Q+ E R+L
Sbjct: 78 LDNLKGTFAKLSELHCDQLHVDPENFRLL 106
>pdb|1HBR|D Chain D, R-State Form Of Chicken Hemoglobin D
pdb|1HBR|B Chain B, R-State Form Of Chicken Hemoglobin D
Length = 146
Score = 22.7 bits (47), Expect = 7.3
Identities = 10/29 (34%), Positives = 18/29 (61%)
Query: 54 LDNLKSTFNEFDEAAQEQIAWLKERIRVL 82
LDN+K+TF++ E +++ E R+L
Sbjct: 78 LDNIKNTFSQLSELHCDKLHVDPENFRLL 106
>pdb|1BBP|A Chain A, Bilin Binding Protein (BBP)
pdb|1BBP|C Chain C, Bilin Binding Protein (BBP)
pdb|1BBP|B Chain B, Bilin Binding Protein (BBP)
pdb|1BBP|D Chain D, Bilin Binding Protein (BBP)
Length = 173
Score = 22.7 bits (47), Expect = 7.3
Identities = 17/62 (27%), Positives = 28/62 (44%), Gaps = 12/62 (19%)
Query: 7 DTEEVREFVGHLERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDE 66
D + ++FV L R K L E ++ N+ S V+D+ K +++F E
Sbjct: 120 DKKGHQDFVWVLSRSKVLTGEAKTAVENYLIG------------SPVVDSQKLVYSDFSE 167
Query: 67 AA 68
AA
Sbjct: 168 AA 169
>pdb|1REG|X Chain X, Mol_id: 1; Molecule: T4 Rega; Chain: X, Y
pdb|1REG|Y Chain Y, Mol_id: 1; Molecule: T4 Rega; Chain: X, Y
Length = 122
Score = 22.7 bits (47), Expect = 7.3
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 50 FSEVL--DNLKSTFNEFDEAAQEQIAWLKERIRVLE 83
F E+L D + E DE ++ IAWL E ++E
Sbjct: 50 FKEMLRMDGRQVEMTEEDEVRRDSIAWLLEDWGLIE 85
>pdb|1EJF|A Chain A, Crystal Structure Of The Human Co-Chaperone P23
pdb|1EJF|B Chain B, Crystal Structure Of The Human Co-Chaperone P23
Length = 125
Score = 22.3 bits (46), Expect = 9.5
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Query: 26 REEVNSLSNHFHNLESWRD------ARRDKFSE 52
R ++N LS F+N + W D + D+FSE
Sbjct: 93 RAKLNWLSVDFNNWKDWEDDSDEDMSNFDRFSE 125
>pdb|3PGK| Phosphoglycerate Kinase (E.C.2.7.2.3) Complex With Atp, Magnesium
Or Manganese, 3-Phosphoglycerate
Length = 416
Score = 22.3 bits (46), Expect = 9.5
Identities = 11/31 (35%), Positives = 19/31 (60%)
Query: 50 FSEVLDNLKSTFNEFDEAAQEQIAWLKERIR 80
F +VL+N + + FD+A +IA L E+ +
Sbjct: 242 FKKVLENTEIGDSIFDKAVGPEIAKLMEKAK 272
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.132 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 478,799
Number of Sequences: 13198
Number of extensions: 15435
Number of successful extensions: 74
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 60
Number of HSP's gapped (non-prelim): 16
length of query: 86
length of database: 2,899,336
effective HSP length: 62
effective length of query: 24
effective length of database: 2,081,060
effective search space: 49945440
effective search space used: 49945440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)