BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645233|ref|NP_207403.1| hypothetical protein
[Helicobacter pylori 26695]
(160 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1FLO|B Chain B, Flp Recombinase-Holliday Junction Compl... 27 0.85
pdb|1QSA|A Chain A, Crystal Structure Of The 70 Kda Soluble... 26 2.5
pdb|1AUU|A Chain A, Solution Structure Of The Rna-Binding D... 26 2.5
pdb|1SLY| Complex Of The 70-Kda Soluble Lytic Transglycos... 25 3.2
pdb|1K28|D Chain D, The Structure Of The Bacteriophage T4 C... 24 9.4
>pdb|1FLO|B Chain B, Flp Recombinase-Holliday Junction Complex I
pdb|1FLO|A Chain A, Flp Recombinase-Holliday Junction Complex I
pdb|1FLO|D Chain D, Flp Recombinase-Holliday Junction Complex I
pdb|1FLO|C Chain C, Flp Recombinase-Holliday Junction Complex I
Length = 422
Score = 27.3 bits (59), Expect = 0.85
Identities = 17/63 (26%), Positives = 25/63 (38%)
Query: 8 KITPKPASDSSYTAFLWGAKGGYQFAFFKALALRGEFSYLMAIKPTALHTINTSLLSLNI 67
+IT K + YT+ K YQF F G FS + + P + + L + I
Sbjct: 155 EITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVII 214
Query: 68 DVL 70
L
Sbjct: 215 QCL 217
>pdb|1QSA|A Chain A, Crystal Structure Of The 70 Kda Soluble Lytic
Transglycosylase Slt70 From Escherichia Coli At 1.65
Angstroms Resolution
pdb|1QTE|A Chain A, Crystal Structure Of The 70 Kda Soluble Lytic
Transglycosylase Slt70 From Escherichia Coli At 1.90 A
Resolution In Complex With A 1,6-Anhydromurotripeptide
Length = 618
Score = 25.8 bits (55), Expect = 2.5
Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 26/112 (23%)
Query: 45 SYLMAIKP-TALHTINTSLL------------SLNIDVLSDFYTYKKYSFGVYGGLGIGY 91
S LM I P TA HT+ + NI++ + + Y FG
Sbjct: 492 SGLMQIMPGTATHTVKMFSIPGYSSPGQLLDPETNINIGTSYLQYVYQQFG--------- 542
Query: 92 FYQSNHLGMKNSSFMGYNGLFNVGLGSTIDRHHRIELGAKIPFSKTRNSFKN 143
N+ ++++ G LG++ R + IPFS+TR KN
Sbjct: 543 ----NNRIFSSAAYNAGPGRVRTWLGNSAGRIDAVAFVESIPFSETRGYVKN 590
>pdb|1AUU|A Chain A, Solution Structure Of The Rna-Binding Domain Of The
Antiterminator Protein Sacy, Nmr, 10 Structures
pdb|1AUU|B Chain B, Solution Structure Of The Rna-Binding Domain Of The
Antiterminator Protein Sacy, Nmr, 10 Structures
Length = 55
Score = 25.8 bits (55), Expect = 2.5
Identities = 12/28 (42%), Positives = 17/28 (59%)
Query: 125 RIELGAKIPFSKTRNSFKNPYFLESVFI 152
+I LGA I F+K +N +P +E FI
Sbjct: 21 KILLGAGIAFNKKKNDIVDPSKIEKTFI 48
>pdb|1SLY| Complex Of The 70-Kda Soluble Lytic Transglycosylase With Bulgecin
A
Length = 618
Score = 25.4 bits (54), Expect = 3.2
Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 26/112 (23%)
Query: 45 SYLMAIKP-TALHTINTSLL------------SLNIDVLSDFYTYKKYSFGVYGGLGIGY 91
S LM I P TA HT+ + NI++ + + Y FG
Sbjct: 492 SGLMQIMPGTATHTVKMFSIPGYSSPGQLLDPETNINIGTSYLQYVYQQFG--------- 542
Query: 92 FYQSNHLGMKNSSFMGYNGLFNVGLGSTIDRHHRIELGAKIPFSKTRNSFKN 143
N+ ++++ G LG++ R + IPFS+TR KN
Sbjct: 543 ----NNRIFSSAAYNAGLGRVRTWLGNSAGRIDAVAFVESIPFSETRGYVKN 590
>pdb|1K28|D Chain D, The Structure Of The Bacteriophage T4 Cell-Puncturing
Device
Length = 391
Score = 23.9 bits (50), Expect = 9.4
Identities = 8/22 (36%), Positives = 15/22 (67%)
Query: 129 GAKIPFSKTRNSFKNPYFLESV 150
G KI F+ ++N FK ++++ V
Sbjct: 321 GVKIIFNDSKNQFKTEFYVDEV 342
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.324 0.141 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 973,902
Number of Sequences: 13198
Number of extensions: 39372
Number of successful extensions: 76
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 73
Number of HSP's gapped (non-prelim): 5
length of query: 160
length of database: 2,899,336
effective HSP length: 81
effective length of query: 79
effective length of database: 1,830,298
effective search space: 144593542
effective search space used: 144593542
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)