BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645234|ref|NP_207404.1| hypothetical protein
[Helicobacter pylori 26695]
(1238 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1OSM|A Chain A, Osmoporin (Ompk36) From Klebsiella Pneu... 35 0.039
pdb|1IB4|A Chain A, Crystal Structure Of Polygalacturonase ... 33 0.20
pdb|6FAB|H Chain H, Antigen-Binding Fragment Of The Murine ... 33 0.26
pdb|1IO1|A Chain A, Crystal Structure Of F41 Fragment Of Fl... 32 0.57
pdb|1H7Z|A Chain A, Adenovirus Ad3 Fibre Head >gi|15826196|... 32 0.57
pdb|1JFQ|H Chain H, Antigen-Binding Fragment Of The Murine ... 32 0.57
pdb|1HIX|B Chain B, Crystallographic Analyses Of Family 11 ... 31 0.74
pdb|1EIB|A Chain A, Crystal Structure Of Chitinase A Mutant... 30 1.7
pdb|1EHN|A Chain A, Crystal Structure Of Chitinase A Mutant... 30 1.7
pdb|1I5P|A Chain A, Insecticidal Crystal Protein Cry2aa 30 1.7
pdb|1CTN| Chitinase A (E.C.3.2.1.14) (Ph 5.5, 4 Degrees C) 30 1.7
pdb|1EDQ|A Chain A, Crystal Structure Of Chitinase A From S... 30 1.7
pdb|1K9T|A Chain A, Chitinase A Complexed With Tetra-N-Acet... 30 1.7
pdb|1FFR|A Chain A, Crystal Structure Of Chitinase A Mutant... 30 1.7
pdb|1CGT| Cyclodextrin Glycosyltransferase (E.C.2.4.1.19) 29 2.8
pdb|6CGT| Hoxa Complex Of Cyclodextrin Glycosyltransferas... 29 2.8
pdb|5CGT| Maltotriose Complex Of Preconditioned Cyclodext... 29 2.8
pdb|3CGT| Structure Of Cyclodextrin Glycosyltransferase C... 29 2.8
pdb|4CGT| Deletion Mutant Delta(145-150), F151d Of Cyclod... 29 2.8
pdb|1H6W|A Chain A, Crystal Structure Of A Heat- And Protea... 29 2.8
pdb|1KQB|A Chain A, Structure Of Nitroreductase From E. Clo... 28 4.8
pdb|1GO8|P Chain P, The Metzincin's Methionine: Prtc M226l ... 28 4.8
pdb|1NEC|A Chain A, Nitroreductase From Enterobacter Cloaca... 28 4.8
pdb|1GO7|P Chain P, The Metzincin's Methionine: Prtc M226c-... 28 6.3
pdb|1K7Q|A Chain A, Prtc From Erwinia Chrysanthemi: E189a M... 28 6.3
pdb|1QIU|A Chain A, A Triple Beta-Spiral In The Adenovirus ... 28 6.3
pdb|1K7G|A Chain A, Prtc From Erwinia Chrysanthemi 28 6.3
pdb|1K7I|A Chain A, Prtc From Erwinia Chrysanthemi: Y228f M... 28 6.3
pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile... 28 8.2
pdb|16PK| Phosphoglycerate Kinase From Trypanosoma Brucei... 28 8.2
pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dn... 28 8.2
pdb|1XBD| Internal Xylan Binding Domain From Cellulomonas... 28 8.2
pdb|1E5B|A Chain A, Internal Xylan Binding Domain From C. F... 28 8.2
>pdb|1OSM|A Chain A, Osmoporin (Ompk36) From Klebsiella Pneumoniae
pdb|1OSM|B Chain B, Osmoporin (Ompk36) From Klebsiella Pneumoniae
pdb|1OSM|C Chain C, Osmoporin (Ompk36) From Klebsiella Pneumoniae
Length = 342
Score = 35.4 bits (80), Expect = 0.039
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 235 GIVNGGNFGFDNVDSNGATTISGVTFNNNGALTYKGGNGIGGSITF 280
G+V+G NF NG+ + G T N GAL + G+G G S+T+
Sbjct: 139 GLVDGLNFALQYQGKNGSVSGEGATNNGRGALK-QNGDGFGTSVTY 183
>pdb|1IB4|A Chain A, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
pdb|1IB4|B Chain B, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus
Length = 339
Score = 33.1 bits (74), Expect = 0.20
Identities = 39/160 (24%), Positives = 61/160 (37%), Gaps = 35/160 (21%)
Query: 1044 LNVTNAKFSNQTPHGGFNLKANNITWDK--GSVNGGGNFGVDNADSNGATTISGVT---- 1097
L + N+ + G L +IT D G NGG N + ++ TISG T
Sbjct: 120 LKIVNSPVQVFSVAGSDYLTLKDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYNQ 179
Query: 1098 -----FNNNGTLIYKGGENSAGNSLTLENNTFNSYNINAKAQNLIFNNNSFNGGSYSFND 1152
N+ + + GG S G+ L++ + G S N
Sbjct: 180 DDCVAVNSGENIYFSGGYCSGGHGLSIG-----------------------SVGGRSDNT 216
Query: 1153 TKNTTFKGTNTLINSDPFSRLKGSVSIENNSVFNIERDLT 1192
KN TF +T+INSD R+K ++ + +D+T
Sbjct: 217 VKNVTFV-DSTIINSDNGVRIKTNIDTTGSVSDVTYKDIT 255
>pdb|6FAB|H Chain H, Antigen-Binding Fragment Of The Murine Anti-Phenylarsonate
Antibody 36-71, "fab 36-71"
Length = 222
Score = 32.7 bits (73), Expect = 0.26
Identities = 26/79 (32%), Positives = 34/79 (42%), Gaps = 6/79 (7%)
Query: 625 SGSAKINVSQSDFYDWTGGGYDFTGNGVFDSVNFNKAYYKFQGTE-NSYNFKNTNFLAGN 683
SG + S GY FT NG+ N+ K QG E YN ++A N
Sbjct: 7 SGVELVRAGSSVKMSCKASGYTFTSNGI----NWVKQR-PGQGLEWIGYNNPGNGYIAYN 61
Query: 684 FKFQGKTTIEKSVLSDASY 702
KF+GKTT+ S +Y
Sbjct: 62 EKFKGKTTLTVDKSSSTAY 80
>pdb|1IO1|A Chain A, Crystal Structure Of F41 Fragment Of Flagellin
Length = 398
Score = 31.6 bits (70), Expect = 0.57
Identities = 42/211 (19%), Positives = 77/211 (35%), Gaps = 15/211 (7%)
Query: 903 NLKNVNNNASNTVFYLNGMTTWKIAGTGVFTQDYSGANSVL---VFNQTTPFLAGANPTS 959
+LK +N+ + LN +K++ T Y+ L F + L G +
Sbjct: 106 DLKQINSQTLG-LDTLNVQQKYKVSDTAATVTGYADTTIALDNSTFKASATGLGGTDQKI 164
Query: 960 NSVVSFGKTSGAEWGLVGYIQGVFKANQIDIT-----GTIRSGNGAK---TGGGATLVFN 1011
+ + F T+G + V G K +++ G + GA TGG
Sbjct: 165 DGDLKFDDTTGKYYAKVTVTGGTGKDGYYEVSVDKTNGEVTLAGGATSPLTGGLPATATE 224
Query: 1012 AQKRLNIANAHLNNDKAGLQNSWMNFIVNNGNLNVTNAKFSNQTPHGGFNLKANNITWDK 1071
K + +ANA L KA L + + + ++ T+ + +T GG +K + +
Sbjct: 225 DVKNVQVANADLTEAKAALTAAGVTGTASVVKMSYTDN--NGKTIDGGLAVKVGD-DYYS 281
Query: 1072 GSVNGGGNFGVDNADSNGATTISGVTFNNNG 1102
+ N G+ ++ S N G
Sbjct: 282 ATQNKDGSISINTTKYTADDGTSKTALNKLG 312
>pdb|1H7Z|A Chain A, Adenovirus Ad3 Fibre Head
pdb|1H7Z|B Chain B, Adenovirus Ad3 Fibre Head
pdb|1H7Z|C Chain C, Adenovirus Ad3 Fibre Head
Length = 194
Score = 31.6 bits (70), Expect = 0.57
Identities = 23/112 (20%), Positives = 45/112 (39%), Gaps = 16/112 (14%)
Query: 1124 FNSYNINAKAQNLIFNNNSFNGGSYSF---NDTKNTTFKGTNTLINSDPFSRLKGSVSIE 1180
+ N ++K ++ N G + +D NT FK N IN + + G + +
Sbjct: 22 YGKQNPDSKLTLILVKNGGIVNGYVTLMGASDYVNTLFKNKNVSINVELYFDATGHILPD 81
Query: 1181 NNSV-------------FNIERDLTDKTTYTLLSGNSIKYNNQALAGQCFFK 1219
++S+ F+ + T Y + N+ +N + GQC++K
Sbjct: 82 SSSLKTDLELKYKQTADFSARGFMPSTTAYPFVLPNAGTHNENYIFGQCYYK 133
>pdb|1JFQ|H Chain H, Antigen-Binding Fragment Of The Murine Anti-Phenylarsonate
Antibody 36-71, "fab 36-71"
Length = 222
Score = 31.6 bits (70), Expect = 0.57
Identities = 25/79 (31%), Positives = 34/79 (42%), Gaps = 6/79 (7%)
Query: 625 SGSAKINVSQSDFYDWTGGGYDFTGNGVFDSVNFNKAYYKFQGTE-NSYNFKNTNFLAGN 683
SG + S GY FT NG+ N+ K QG E YN ++ N
Sbjct: 7 SGVELVRAGSSVKMSCKASGYTFTSNGI----NWVKQR-PGQGLEWIGYNNPGNGYITYN 61
Query: 684 FKFQGKTTIEKSVLSDASY 702
KF+GKTT+ S+ +Y
Sbjct: 62 EKFKGKTTLTVDKSSNTAY 80
>pdb|1HIX|B Chain B, Crystallographic Analyses Of Family 11
Endo-Beta-1,4-Xylanase Xyl1 From Streptomyces Sp. S38
pdb|1HIX|A Chain A, Crystallographic Analyses Of Family 11
Endo-Beta-1,4-Xylanase Xyl1 From Streptomyces Sp. S38
Length = 190
Score = 31.2 bits (69), Expect = 0.74
Identities = 38/145 (26%), Positives = 56/145 (38%), Gaps = 10/145 (6%)
Query: 183 NGAYFQNNRAGTQTSWINLISNNSVNLTNTDFGNQTPNGGF-NAMGRKITYNGGIVNGGN 241
NG Y+ G + +NL S S + T+ GN G+ N R + Y+G GN
Sbjct: 13 NGYYYSFWTDGGGSVSMNLASGGSYGTSWTNCGNFVAGKGWANGARRTVNYSGSFNPSGN 72
Query: 242 FGFDNVDSNGATTISGVTFNNNGALTYKGGNGIGGSITFTNSNINHYK-LNLNANSV--- 297
+ +N G TY+ G++T + Y+ +NA SV
Sbjct: 73 AYLTLYGWTANPLVEYYIVDNWG--TYRPTGTYKGTVTSDGGTYDVYQTTRVNAPSVEGT 130
Query: 298 -TFNN--SALGSMPNGNANTIGNAY 319
TFN S S G + T GN +
Sbjct: 131 KTFNQYWSVRQSKRTGGSITAGNHF 155
>pdb|1EIB|A Chain A, Crystal Structure Of Chitinase A Mutant D313a Complexed
With Octa-N-Acetylchitooctaose (Nag)8
Length = 540
Score = 30.0 bits (66), Expect = 1.7
Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 16/124 (12%)
Query: 98 RTWAGGNRNFTQNYNNSQLYIGTKNASSTPNHSSVWFGEKGYVGF--ITGVFKAKDIFIT 155
R W G N Y N+ + GT +T W E G V + I G F + + T
Sbjct: 423 RGWTGVN-----GYQNNIPFTGT----ATGPVKGTW--ENGIVDYRQIAGQFMSGEWQYT 471
Query: 156 --GAVGSGNEWKTGGGAILVFESSNELSANGAYFQNNRAGTQTSW-INLISNNSVNLTNT 212
+ +K G ++ F+ + + A G Y + + G SW I+ + + +N N
Sbjct: 472 YDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADNGDILNSMNA 531
Query: 213 DFGN 216
GN
Sbjct: 532 SLGN 535
>pdb|1EHN|A Chain A, Crystal Structure Of Chitinase A Mutant E315q Complexed
With Octa-N-Acetylchitooctaose (Nag)8
Length = 540
Score = 30.0 bits (66), Expect = 1.7
Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 16/124 (12%)
Query: 98 RTWAGGNRNFTQNYNNSQLYIGTKNASSTPNHSSVWFGEKGYVGF--ITGVFKAKDIFIT 155
R W G N Y N+ + GT +T W E G V + I G F + + T
Sbjct: 423 RGWTGVN-----GYQNNIPFTGT----ATGPVKGTW--ENGIVDYRQIAGQFMSGEWQYT 471
Query: 156 --GAVGSGNEWKTGGGAILVFESSNELSANGAYFQNNRAGTQTSW-INLISNNSVNLTNT 212
+ +K G ++ F+ + + A G Y + + G SW I+ + + +N N
Sbjct: 472 YDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADNGDILNSMNA 531
Query: 213 DFGN 216
GN
Sbjct: 532 SLGN 535
>pdb|1I5P|A Chain A, Insecticidal Crystal Protein Cry2aa
Length = 633
Score = 30.0 bits (66), Expect = 1.7
Identities = 60/277 (21%), Positives = 101/277 (35%), Gaps = 41/277 (14%)
Query: 68 LSAEDYNSSVYWLNSVNENNNNKSYYISPLRTWAGGNRNFTQNYNN--SQLYIGTKNASS 125
L A+ N + ++ V N + + LRT+ RN+T++Y+N Y +
Sbjct: 176 LFAQAANMHLSFIRDVILNADEWGISAATLRTYRDYLRNYTRDYSNYCINTYQTAFRGLN 235
Query: 126 TPNHSSVWFGEKGYVGFITGVFKAKDIFITGAVGSGNEWKTGGGAILVFESSNELSANGA 185
T H + F + Y+ VF+ I W L+ S L A+G+
Sbjct: 236 TRLHDMLEF--RTYM--FLNVFEYVSI-----------WSLFKYQSLMVSSGANLYASGS 280
Query: 186 YFQNNRAGTQTSWINLISNNSVN-------LTNTDFGNQTPNGG--------FNAMGRKI 230
Q ++ T +W L S VN ++ T PN G + ++
Sbjct: 281 GPQQTQSFTAQNWPFLYSLFQVNSNYILSGISGTRLSITFPNIGGLPGSTTTHSLNSARV 340
Query: 231 TYNGGIVNGGNFGFDNVDSN-GATTISGVTFNNNGALTYKGGNGIGGSITFTNSNINHYK 289
Y+GG V+ G G N++ N +T+ G G T TN ++
Sbjct: 341 NYSGG-VSSGLIGATNLNHNFNCSTVLPPLSTPFVRSWLDSGTDREGVATSTNWQTESFQ 399
Query: 290 LNLNANSVTFNNSALGSMPNGNANTIGNAYILNASNI 326
L+ F+ GN+N + +I N S +
Sbjct: 400 TTLSLRCGAFS-------ARGNSNYFPDYFIRNISGV 429
>pdb|1CTN| Chitinase A (E.C.3.2.1.14) (Ph 5.5, 4 Degrees C)
Length = 540
Score = 30.0 bits (66), Expect = 1.7
Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 16/124 (12%)
Query: 98 RTWAGGNRNFTQNYNNSQLYIGTKNASSTPNHSSVWFGEKGYVGF--ITGVFKAKDIFIT 155
R W G N Y N+ + GT +T W E G V + I G F + + T
Sbjct: 423 RGWTGVN-----GYQNNIPFTGT----ATGPVKGTW--ENGIVDYRQIAGQFMSGEWQYT 471
Query: 156 --GAVGSGNEWKTGGGAILVFESSNELSANGAYFQNNRAGTQTSW-INLISNNSVNLTNT 212
+ +K G ++ F+ + + A G Y + + G SW I+ + + +N N
Sbjct: 472 YDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADNGDILNSMNA 531
Query: 213 DFGN 216
GN
Sbjct: 532 SLGN 535
>pdb|1EDQ|A Chain A, Crystal Structure Of Chitinase A From S. Marcescens At
1.55 Angstroms
Length = 540
Score = 30.0 bits (66), Expect = 1.7
Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 16/124 (12%)
Query: 98 RTWAGGNRNFTQNYNNSQLYIGTKNASSTPNHSSVWFGEKGYVGF--ITGVFKAKDIFIT 155
R W G N Y N+ + GT +T W E G V + I G F + + T
Sbjct: 423 RGWTGVN-----GYQNNIPFTGT----ATGPVKGTW--ENGIVDYRQIAGQFMSGEWQYT 471
Query: 156 --GAVGSGNEWKTGGGAILVFESSNELSANGAYFQNNRAGTQTSW-INLISNNSVNLTNT 212
+ +K G ++ F+ + + A G Y + + G SW I+ + + +N N
Sbjct: 472 YDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADNGDILNSMNA 531
Query: 213 DFGN 216
GN
Sbjct: 532 SLGN 535
>pdb|1K9T|A Chain A, Chitinase A Complexed With Tetra-N-Acetylchitotriose
Length = 540
Score = 30.0 bits (66), Expect = 1.7
Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 16/124 (12%)
Query: 98 RTWAGGNRNFTQNYNNSQLYIGTKNASSTPNHSSVWFGEKGYVGF--ITGVFKAKDIFIT 155
R W G N Y N+ + GT +T W E G V + I G F + + T
Sbjct: 423 RGWTGVN-----GYQNNIPFTGT----ATGPVKGTW--ENGIVDYRQIAGQFMSGEWQYT 471
Query: 156 --GAVGSGNEWKTGGGAILVFESSNELSANGAYFQNNRAGTQTSW-INLISNNSVNLTNT 212
+ +K G ++ F+ + + A G Y + + G SW I+ + + +N N
Sbjct: 472 YDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADNGDILNSMNA 531
Query: 213 DFGN 216
GN
Sbjct: 532 SLGN 535
>pdb|1FFR|A Chain A, Crystal Structure Of Chitinase A Mutant Y390f Complexed
With Hexa-N-Acetylchitohexaose (Nag)6
Length = 540
Score = 30.0 bits (66), Expect = 1.7
Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 16/124 (12%)
Query: 98 RTWAGGNRNFTQNYNNSQLYIGTKNASSTPNHSSVWFGEKGYVGF--ITGVFKAKDIFIT 155
R W G N Y N+ + GT +T W E G V + I G F + + T
Sbjct: 423 RGWTGVN-----GYQNNIPFTGT----ATGPVKGTW--ENGIVDYRQIAGQFMSGEWQYT 471
Query: 156 --GAVGSGNEWKTGGGAILVFESSNELSANGAYFQNNRAGTQTSW-INLISNNSVNLTNT 212
+ +K G ++ F+ + + A G Y + + G SW I+ + + +N N
Sbjct: 472 YDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADNGDILNSMNA 531
Query: 213 DFGN 216
GN
Sbjct: 532 SLGN 535
>pdb|1CGT| Cyclodextrin Glycosyltransferase (E.C.2.4.1.19)
Length = 684
Score = 29.3 bits (64), Expect = 2.8
Identities = 38/177 (21%), Positives = 61/177 (33%), Gaps = 38/177 (21%)
Query: 183 NGAYFQNNRAGTQTSWINLISNNSVNLTNTDFGNQTPNGGFNAMGRKITYNGGIVNGGNF 242
N Y + G + + + N S + + T P G + + GG++NG N
Sbjct: 416 NDVYVYERKFGKSVAVVAVNRNLSTSASITGLSTSLPTGSYTDV------LGGVLNGNNI 469
Query: 243 GFDNVDSNGATTISGV-------------TFNNNGALTYKGGN-------GIG------- 275
N N T +G T + G + K GN G G
Sbjct: 470 TSTNGSINNFTLAAGATAVWQYTTAETTPTIGHVGPVMGKPGNVVTIDGRGFGSTKGTVY 529
Query: 276 -GSITFTNSNINHY---KLNLNANSVTFNNSALGSMPNG-NANTIGNAYILNASNIT 327
G+ T + I + ++ + SV N A+ +G N+N N IL +T
Sbjct: 530 FGTTAVTGAAITSWEDTQIKVTIPSVAAGNYAVKVAASGVNSNAYNNFTILTGDQVT 586
>pdb|6CGT| Hoxa Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 29.3 bits (64), Expect = 2.8
Identities = 38/177 (21%), Positives = 61/177 (33%), Gaps = 38/177 (21%)
Query: 183 NGAYFQNNRAGTQTSWINLISNNSVNLTNTDFGNQTPNGGFNAMGRKITYNGGIVNGGNF 242
N Y + G + + + N S + + T P G + + GG++NG N
Sbjct: 416 NDVYVYERKFGKSVAVVAVNRNLSTSASITGLSTSLPTGSYTDV------LGGVLNGNNI 469
Query: 243 GFDNVDSNGATTISGV-------------TFNNNGALTYKGGN-------GIG------- 275
N N T +G T + G + K GN G G
Sbjct: 470 TSTNGSINNFTLAAGATAVWQYTTAETTPTIGHVGPVMGKPGNVVTIDGRGFGSTKGTVY 529
Query: 276 -GSITFTNSNINHY---KLNLNANSVTFNNSALGSMPNG-NANTIGNAYILNASNIT 327
G+ T + I + ++ + SV N A+ +G N+N N IL +T
Sbjct: 530 FGTTAVTGAAITSWEDTQIKVTIPSVAAGNYAVKVAASGVNSNAYNNFTILTGDQVT 586
>pdb|5CGT| Maltotriose Complex Of Preconditioned Cyclodextrin
Glycosyltransferase Mutant
pdb|1CGU| Cyclodextrin Glycosyltransferase (E.C.2.4.1.19) Mutant With Asp
229 Replaced By Ala (D229a)
pdb|7CGT| Rameb Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 29.3 bits (64), Expect = 2.8
Identities = 38/177 (21%), Positives = 61/177 (33%), Gaps = 38/177 (21%)
Query: 183 NGAYFQNNRAGTQTSWINLISNNSVNLTNTDFGNQTPNGGFNAMGRKITYNGGIVNGGNF 242
N Y + G + + + N S + + T P G + + GG++NG N
Sbjct: 416 NDVYVYERKFGKSVAVVAVNRNLSTSASITGLSTSLPTGSYTDV------LGGVLNGNNI 469
Query: 243 GFDNVDSNGATTISGV-------------TFNNNGALTYKGGN-------GIG------- 275
N N T +G T + G + K GN G G
Sbjct: 470 TSTNGSINNFTLAAGATAVWQYTTAETTPTIGHVGPVMGKPGNVVTIDGRGFGSTKGTVY 529
Query: 276 -GSITFTNSNINHY---KLNLNANSVTFNNSALGSMPNG-NANTIGNAYILNASNIT 327
G+ T + I + ++ + SV N A+ +G N+N N IL +T
Sbjct: 530 FGTTAVTGAAITSWEDTQIKVTIPSVAAGNYAVKVAASGVNSNAYNNFTILTGDQVT 586
>pdb|3CGT| Structure Of Cyclodextrin Glycosyltransferase Complexed With Its
Main Product Beta-Cyclodextrin
pdb|8CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltohexaose
pdb|9CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltopentaose
Length = 684
Score = 29.3 bits (64), Expect = 2.8
Identities = 38/177 (21%), Positives = 61/177 (33%), Gaps = 38/177 (21%)
Query: 183 NGAYFQNNRAGTQTSWINLISNNSVNLTNTDFGNQTPNGGFNAMGRKITYNGGIVNGGNF 242
N Y + G + + + N S + + T P G + + GG++NG N
Sbjct: 416 NDVYVYERKFGKSVAVVAVNRNLSTSASITGLSTSLPTGSYTDV------LGGVLNGNNI 469
Query: 243 GFDNVDSNGATTISGV-------------TFNNNGALTYKGGN-------GIG------- 275
N N T +G T + G + K GN G G
Sbjct: 470 TSTNGSINNFTLAAGATAVWQYTTAETTPTIGHVGPVMGKPGNVVTIDGRGFGSTKGTVY 529
Query: 276 -GSITFTNSNINHY---KLNLNANSVTFNNSALGSMPNG-NANTIGNAYILNASNIT 327
G+ T + I + ++ + SV N A+ +G N+N N IL +T
Sbjct: 530 FGTTAVTGAAITSWEDTQIKVTIPSVAAGNYAVKVAASGVNSNAYNNFTILTGDQVT 586
>pdb|4CGT| Deletion Mutant Delta(145-150), F151d Of Cyclodextrin
Glycosyltransferase
Length = 678
Score = 29.3 bits (64), Expect = 2.8
Identities = 38/177 (21%), Positives = 61/177 (33%), Gaps = 38/177 (21%)
Query: 183 NGAYFQNNRAGTQTSWINLISNNSVNLTNTDFGNQTPNGGFNAMGRKITYNGGIVNGGNF 242
N Y + G + + + N S + + T P G + + GG++NG N
Sbjct: 410 NDVYVYERKFGKSVAVVAVNRNLSTSASITGLSTSLPTGSYTDV------LGGVLNGNNI 463
Query: 243 GFDNVDSNGATTISGV-------------TFNNNGALTYKGGN-------GIG------- 275
N N T +G T + G + K GN G G
Sbjct: 464 TSTNGSINNFTLAAGATAVWQYTTAETTPTIGHVGPVMGKPGNVVTIDGRGFGSTKGTVY 523
Query: 276 -GSITFTNSNINHY---KLNLNANSVTFNNSALGSMPNG-NANTIGNAYILNASNIT 327
G+ T + I + ++ + SV N A+ +G N+N N IL +T
Sbjct: 524 FGTTAVTGAAITSWEDTQIKVTIPSVAAGNYAVKVAASGVNSNAYNNFTILTGDQVT 580
>pdb|1H6W|A Chain A, Crystal Structure Of A Heat- And Protease-Stable Fragment Of
The Bacteriophage T4 Short Fibre
Length = 312
Score = 29.3 bits (64), Expect = 2.8
Identities = 49/219 (22%), Positives = 74/219 (33%), Gaps = 16/219 (7%)
Query: 904 LKNVNNNASNTVFYLNGMTTWKIAGTGVFTQDYS--GANSVLVFNQTTPFLAGANPTSNS 961
+ VNN +S T + +A VF S +N V+ + LAGA+ T+
Sbjct: 23 IAGVNNESSITP------AKFTVALNNVFETRVSTESSNGVIKISSLPQALAGADDTT-- 74
Query: 962 VVSFGKTSGAEWGLVGYIQGVFKANQIDITGTIRSGNGAKTGGGATLVFNAQKRLNIANA 1021
++ KT L+ I A G I+ A+ G A N+
Sbjct: 75 AMTPLKTQQLAVKLIAQIAPSKNAATESEQGVIQLATVAQARQGTLREGYAISPYTFMNS 134
Query: 1022 HLNNDKAGLQNSWMNFIVNNGNLNVT------NAKFSNQTPHGGFNLKANNITWDKGSVN 1075
+ G+ VN+ N +V N + S + G L + G +
Sbjct: 135 TATEEYKGVIKLGTQSEVNSNNASVAVTGATLNGRGSTTSMRGVVKLTTTAGSQSGGDAS 194
Query: 1076 GGGNFGVDNADSNGATTISGVTFNNNGTLIYKGGENSAG 1114
+ D G TI+G NN I GG N G
Sbjct: 195 SALAWNADVIHQRGGQTINGTLRINNTLTIASGGANITG 233
Score = 28.1 bits (61), Expect = 6.3
Identities = 18/63 (28%), Positives = 26/63 (40%), Gaps = 6/63 (9%)
Query: 229 KITYNGGIVNGGN------FGFDNVDSNGATTISGVTFNNNGALTYKGGNGIGGSITFTN 282
K+T G +GG+ + D + G TI+G NN GG I G++ T
Sbjct: 180 KLTTTAGSQSGGDASSALAWNADVIHQRGGQTINGTLRINNTLTIASGGANITGTVNMTG 239
Query: 283 SNI 285
I
Sbjct: 240 GYI 242
>pdb|1KQB|A Chain A, Structure Of Nitroreductase From E. Cloacae Complex With
Inhibitor Benzoate
pdb|1KQB|B Chain B, Structure Of Nitroreductase From E. Cloacae Complex With
Inhibitor Benzoate
pdb|1KQB|C Chain C, Structure Of Nitroreductase From E. Cloacae Complex With
Inhibitor Benzoate
pdb|1KQB|D Chain D, Structure Of Nitroreductase From E. Cloacae Complex With
Inhibitor Benzoate
pdb|1KQC|A Chain A, Structure Of Nitroreductase From E. Cloacae Complex With
Inhibitor Acetate
pdb|1KQC|B Chain B, Structure Of Nitroreductase From E. Cloacae Complex With
Inhibitor Acetate
pdb|1KQC|C Chain C, Structure Of Nitroreductase From E. Cloacae Complex With
Inhibitor Acetate
pdb|1KQC|D Chain D, Structure Of Nitroreductase From E. Cloacae Complex With
Inhibitor Acetate
pdb|1KQD|A Chain A, Structure Of Nitroreductase From E. Cloacae Bound With 2e-
Reduced Flavin Mononucleotide (Fmn)
pdb|1KQD|B Chain B, Structure Of Nitroreductase From E. Cloacae Bound With 2e-
Reduced Flavin Mononucleotide (Fmn)
pdb|1KQD|C Chain C, Structure Of Nitroreductase From E. Cloacae Bound With 2e-
Reduced Flavin Mononucleotide (Fmn)
pdb|1KQD|D Chain D, Structure Of Nitroreductase From E. Cloacae Bound With 2e-
Reduced Flavin Mononucleotide (Fmn)
Length = 217
Score = 28.5 bits (62), Expect = 4.8
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 1000 AKTGGGATLVFNAQKRLNIANAHLNNDKAGLQNSWMNFIVN----NGNLNVTNAKFSN 1053
AK+ G T VFN +K L+ ++ + K + ++W+ +V+ +G N AK +N
Sbjct: 61 AKSAAG-TYVFNERKMLDASHVVVFCAKTAMDDAWLERVVDQEEADGRFNTPEAKAAN 117
>pdb|1GO8|P Chain P, The Metzincin's Methionine: Prtc M226l Mutant
Length = 462
Score = 28.5 bits (62), Expect = 4.8
Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 7/91 (7%)
Query: 185 AYFQNNRAGTQTSWINLISNNSVNLTNTDFGNQTPNGGFNAMGRKITYNGGIVNGGNFGF 244
AY+ N G +SW N +N N + ++G QT +I + G+ + G +
Sbjct: 135 AYYPGNYQGAGSSWYNYNQSNIRNPGSEEYGRQT-------FTHEIGHALGLAHPGEYNA 187
Query: 245 DNVDSNGATTISGVTFNNNGALTYKGGNGIG 275
D + + L+Y G N G
Sbjct: 188 GEGDPSYNDAVYAEDSYQFSILSYWGENETG 218
>pdb|1NEC|A Chain A, Nitroreductase From Enterobacter Cloacae
pdb|1NEC|B Chain B, Nitroreductase From Enterobacter Cloacae
pdb|1NEC|C Chain C, Nitroreductase From Enterobacter Cloacae
pdb|1NEC|D Chain D, Nitroreductase From Enterobacter Cloacae
Length = 216
Score = 28.5 bits (62), Expect = 4.8
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 1000 AKTGGGATLVFNAQKRLNIANAHLNNDKAGLQNSWMNFIVN----NGNLNVTNAKFSN 1053
AK+ G T VFN +K L+ ++ + K + ++W+ +V+ +G N AK +N
Sbjct: 60 AKSAAG-TYVFNERKMLDASHVVVFCAKTAMDDAWLERVVDQEEADGRFNTPEAKAAN 116
>pdb|1GO7|P Chain P, The Metzincin's Methionine: Prtc M226c-E189k Double Mutant
Length = 462
Score = 28.1 bits (61), Expect = 6.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 185 AYFQNNRAGTQTSWINLISNNSVNLTNTDFGNQT 218
AY+ N G +SW N +N N + ++G QT
Sbjct: 135 AYYPGNYQGAGSSWYNYNQSNIRNPGSEEYGRQT 168
>pdb|1K7Q|A Chain A, Prtc From Erwinia Chrysanthemi: E189a Mutant
Length = 479
Score = 28.1 bits (61), Expect = 6.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 185 AYFQNNRAGTQTSWINLISNNSVNLTNTDFGNQT 218
AY+ N G +SW N +N N + ++G QT
Sbjct: 152 AYYPGNYQGAGSSWYNYNQSNIRNPGSEEYGRQT 185
>pdb|1QIU|A Chain A, A Triple Beta-Spiral In The Adenovirus Fibre Shaft Reveals
A New Structural Motif For Biological Fibres
pdb|1QIU|B Chain B, A Triple Beta-Spiral In The Adenovirus Fibre Shaft Reveals
A New Structural Motif For Biological Fibres
pdb|1QIU|C Chain C, A Triple Beta-Spiral In The Adenovirus Fibre Shaft Reveals
A New Structural Motif For Biological Fibres
pdb|1QIU|D Chain D, A Triple Beta-Spiral In The Adenovirus Fibre Shaft Reveals
A New Structural Motif For Biological Fibres
pdb|1QIU|E Chain E, A Triple Beta-Spiral In The Adenovirus Fibre Shaft Reveals
A New Structural Motif For Biological Fibres
pdb|1QIU|F Chain F, A Triple Beta-Spiral In The Adenovirus Fibre Shaft Reveals
A New Structural Motif For Biological Fibres
Length = 264
Score = 28.1 bits (61), Expect = 6.3
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 220 NGGFNAMGRKITYNGGIVNGGNFGFDNVDSNGATTI-----SGVTFNNNGALTYKGGNGI 274
+ G N I N G G F + +S I SG+ +N NGA+ K G G+
Sbjct: 6 SSGLNFDNTAIAINAG--KGLEFDTNTSESPDINPIKTKIGSGIDYNENGAMITKLGAGL 63
Query: 275 ----GGSITFTNSN 284
G+IT N N
Sbjct: 64 SFDNSGAITIGNKN 77
>pdb|1K7G|A Chain A, Prtc From Erwinia Chrysanthemi
Length = 479
Score = 28.1 bits (61), Expect = 6.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 185 AYFQNNRAGTQTSWINLISNNSVNLTNTDFGNQT 218
AY+ N G +SW N +N N + ++G QT
Sbjct: 152 AYYPGNYQGAGSSWYNYNQSNIRNPGSEEYGRQT 185
>pdb|1K7I|A Chain A, Prtc From Erwinia Chrysanthemi: Y228f Mutant
Length = 479
Score = 28.1 bits (61), Expect = 6.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 185 AYFQNNRAGTQTSWINLISNNSVNLTNTDFGNQT 218
AY+ N G +SW N +N N + ++G QT
Sbjct: 152 AYYPGNYQGAGSSWYNYNQSNIRNPGSEEYGRQT 185
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 27.7 bits (60), Expect = 8.2
Identities = 21/86 (24%), Positives = 38/86 (43%), Gaps = 17/86 (19%)
Query: 1063 KANNITWD--------KGSVNGGGNFGVDNADSNGATTISGVTFNNNGTLIYKGGENSAG 1114
K N+ +W + V+ F +D+ + T I+G TF+N GT ++A
Sbjct: 148 KPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEG---TRITGSTFDNKGT------RHAAD 198
Query: 1115 NSLTLENNTFNSYNINAKAQNLIFNN 1140
L N+ ++A + +IF+N
Sbjct: 199 ELLNKGNSNNLRVGVHASVEKIIFSN 224
>pdb|16PK| Phosphoglycerate Kinase From Trypanosoma Brucei Bisubstrate Analog
pdb|13PK|A Chain A, Ternary Complex Of Phosphoglycerate Kinase From Trypanosoma
Brucei
pdb|13PK|B Chain B, Ternary Complex Of Phosphoglycerate Kinase From Trypanosoma
Brucei
pdb|13PK|C Chain C, Ternary Complex Of Phosphoglycerate Kinase From Trypanosoma
Brucei
pdb|13PK|D Chain D, Ternary Complex Of Phosphoglycerate Kinase From Trypanosoma
Brucei
Length = 415
Score = 27.7 bits (60), Expect = 8.2
Identities = 17/55 (30%), Positives = 26/55 (46%), Gaps = 3/55 (5%)
Query: 957 PTSNSVVSFGKTSGA---EWGLVGYIQGVFKANQIDITGTIRSGNGAKTGGGATL 1008
P S + K G E GL+ I G A+ +++G + + TGGGA+L
Sbjct: 344 PYSKGTFAIAKAMGRGTHEHGLMSIIGGGDSASAAELSGEAKRMSHVSTGGGASL 398
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
Length = 780
Score = 27.7 bits (60), Expect = 8.2
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
Query: 789 TTFTFNKGVVFNMQGLLSSLSVGTTYQLLNAKSVDYKDNNALYQMLRWISGE--NPSGTL 846
T + KGV N + L L + T LL DY+D ++++ + GE G +
Sbjct: 115 TDIQYAKGVGPNRKKKLKKLGIETLRDLLEFFPRDYEDRRKIFKLNDLLPGEKVTTQGKI 174
Query: 847 VNKDQSAPNSAKIYNVHFTDNGLTYYIKENFNNGITLTRL 886
V+ + + I +D GL + + FN T L
Sbjct: 175 VSVETKKFQNMNILTAVLSD-GLVHVPLKWFNQDYLQTYL 213
>pdb|1XBD| Internal Xylan Binding Domain From Cellulomonas Fimi Xylanase D,
Nmr, 5 Structures
pdb|2XBD| Internal Xylan Binding Domain From Cellulomonas Fimi Xylanase D,
Nmr, Minimized Average Structure
Length = 87
Score = 27.7 bits (60), Expect = 8.2
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 258 VTFNNNGALTYKGGNGIGGSITFTNSNINHYKLNLNANSVTFNNSALGSMPNGNANTIGN 317
VT++ +G+ + + GS T S NAN VT + S PNG+ NT G
Sbjct: 19 VTYSVSGSSAWTVNLALNGSQTIQAS--------WNAN-VTGSGSTRTVTPNGSGNTFGV 69
Query: 318 AYILNASNIT 327
+ N S+ T
Sbjct: 70 TVMKNGSSTT 79
>pdb|1E5B|A Chain A, Internal Xylan Binding Domain From C. Fimi Xyn10a, R262g
Mutant
pdb|1E5C|A Chain A, Internal Xylan Binding Domain From C. Fimi Xyn10a, R262g
Mutant
Length = 87
Score = 27.7 bits (60), Expect = 8.2
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 258 VTFNNNGALTYKGGNGIGGSITFTNSNINHYKLNLNANSVTFNNSALGSMPNGNANTIGN 317
VT++ +G+ + + GS T S NAN VT + S PNG+ NT G
Sbjct: 19 VTYSVSGSSAWTVNLALNGSQTIQAS--------WNAN-VTGSGSTRTVTPNGSGNTFGV 69
Query: 318 AYILNASNIT 327
+ N S+ T
Sbjct: 70 TVMKNGSSTT 79
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.313 0.131 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,303,175
Number of Sequences: 13198
Number of extensions: 416804
Number of successful extensions: 959
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 929
Number of HSP's gapped (non-prelim): 63
length of query: 1238
length of database: 2,899,336
effective HSP length: 99
effective length of query: 1139
effective length of database: 1,592,734
effective search space: 1814124026
effective search space used: 1814124026
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)