BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645236|ref|NP_207406.1| hypothetical protein
[Helicobacter pylori 26695]
         (166 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1CKN|B  Chain B, Structure Of Guanylylated Mrna Capping ...    25  6.0
pdb|1CKN|A  Chain A, Structure Of Guanylylated Mrna Capping ...    25  6.0

>pdb|1CKN|B Chain B, Structure Of Guanylylated Mrna Capping Enzyme Complexed
           With Gtp
          Length = 330

 Score = 24.6 bits (52), Expect = 6.0
 Identities = 14/55 (25%), Positives = 28/55 (50%)

Query: 70  ARIFQNEQSILGFCNIINLYALMSCNVFVPLEYLPSIGQLFIKTSIFYYLNQLLI 124
           +R F  ++S+  F N+    A++    ++PLE+   I     K +  Y+ + L+I
Sbjct: 163 SRFFAMKRSLKEFKNVPEDPAILRYKEWIPLEHPTIIKDHLKKANAIYHTDGLII 217



>pdb|1CKN|A Chain A, Structure Of Guanylylated Mrna Capping Enzyme Complexed
           With Gtp
 pdb|1CKM|A Chain A, Structure Of Two Different Conformations Of Mrna Capping
           Enzyme In Complex With Gtp
 pdb|1CKM|B Chain B, Structure Of Two Different Conformations Of Mrna Capping
           Enzyme In Complex With Gtp
 pdb|1CKO|   Structure Of Mrna Capping Enzyme In Complex With The Cap Analog
           Gpppg
          Length = 330

 Score = 24.6 bits (52), Expect = 6.0
 Identities = 14/55 (25%), Positives = 28/55 (50%)

Query: 70  ARIFQNEQSILGFCNIINLYALMSCNVFVPLEYLPSIGQLFIKTSIFYYLNQLLI 124
           +R F  ++S+  F N+    A++    ++PLE+   I     K +  Y+ + L+I
Sbjct: 163 SRFFAMKRSLKEFKNVPEDPAILRYKEWIPLEHPTIIKDHLKKANAIYHTDGLII 217



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.339    0.151    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 706,830
Number of Sequences: 13198
Number of extensions: 22228
Number of successful extensions: 40
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38
Number of HSP's gapped (non-prelim): 2
length of query: 166
length of database: 2,899,336
effective HSP length: 81
effective length of query: 85
effective length of database: 1,830,298
effective search space: 155575330
effective search space used: 155575330
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 51 (24.3 bits)