BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645239|ref|NP_207409.1| hypothetical protein
[Helicobacter pylori 26695]
(111 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1GE9|A Chain A, Solution Structure Of The Ribosome Recy... 25 1.6
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 25 1.6
pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain ... 24 2.7
pdb|2ABK| Refinement Of The Native Structure Of Endonucle... 23 3.6
pdb|1E17|A Chain A, Solution Structure Of The Dna Binding D... 23 4.7
pdb|1HH2|P Chain P, Crystal Structure Of Nusa From Thermoto... 23 6.1
pdb|1CQT|A Chain A, Crystal Structure Of A Ternary Complex ... 22 8.0
pdb|1HF0|A Chain A, Crystal Structure Of The Dna-Binding Do... 22 8.0
pdb|1ABZ| Alpha-T-Alpha, A De Novo Designed Peptide, Nmr,... 22 8.0
pdb|1E3O|C Chain C, Crystal Structure Of Oct-1 Pou Dimer Bo... 22 8.0
>pdb|1GE9|A Chain A, Solution Structure Of The Ribosome Recycling Factor
Length = 184
Score = 24.6 bits (52), Expect = 1.6
Identities = 18/87 (20%), Positives = 41/87 (46%), Gaps = 12/87 (13%)
Query: 7 VHTTIQALQAKRKKLLTELAEL---EAEIKVSSERKSSFNISLSPSLLAEIEEIEYEEKT 63
+ T+ L +R++ L L EA ++V + R+ + + IEE+E +
Sbjct: 100 IRVTLPPLTEERRRELVRLLHKITEEARVRVRNVRREAKEM---------IEELEGISED 150
Query: 64 SKERRINHSVLLSPSFMAKVDEYMKEK 90
K+R + L+ ++ ++++ M+ K
Sbjct: 151 EKKRALERLQKLTDKYIDEINKLMEAK 177
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 24.6 bits (52), Expect = 1.6
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Query: 14 LQAKRKKLLTELAELEAEIKVSSERKSSFNISLS--PSLLAEIEEIEYEEKTSKERRINH 71
L AK+++L L E+EA I+ ER + ++EE EE+ ++++
Sbjct: 918 LAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLE 977
Query: 72 SVLLSPSFMAKVDEYMKEKGFSNRSLLFEKALE 104
V D+ + + +N+ K LE
Sbjct: 978 KVTADGKIKKMEDDILIMEDQNNKLTKERKLLE 1010
Score = 22.7 bits (47), Expect = 6.1
Identities = 8/22 (36%), Positives = 17/22 (76%)
Query: 12 QALQAKRKKLLTELAELEAEIK 33
Q LQA++KK+ ++ +LE +++
Sbjct: 944 QQLQAEKKKMQQQMLDLEEQLE 965
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A
Histone Lysine Methyltransferase
Length = 302
Score = 23.9 bits (50), Expect = 2.7
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 11 IQALQAKRKKLLTELAELEAEIKVSSERKSSFNISLSPSLLAEIEEIEYEEKTSKERRIN 70
I + +A R++ + +A + ++ + + K S SL P L + E++ E + R IN
Sbjct: 167 ITSEEADRRRAESTIARRK-DVYLFALDKFSDPDSLDPLLAGQPLEVDGEYMSGPTRFIN 225
Query: 71 HSVLLSPSFMAKVDEY 86
HS + + A+V ++
Sbjct: 226 HSCDPNMAIFARVGDH 241
>pdb|2ABK| Refinement Of The Native Structure Of Endonuclease Iii To A
Resolution Of 1.85 Angstrom
Length = 211
Score = 23.5 bits (49), Expect = 3.6
Identities = 13/51 (25%), Positives = 24/51 (46%)
Query: 15 QAKRKKLLTELAELEAEIKVSSERKSSFNISLSPSLLAEIEEIEYEEKTSK 65
+AKR ++LT L E S F + ++ L A+ ++ + T+K
Sbjct: 3 KAKRLEILTRLRENNPHPTTELNFSSPFELLIAVLLSAQATDVSVNKATAK 53
>pdb|1E17|A Chain A, Solution Structure Of The Dna Binding Domain Of The Human
Forkhead Transcription Factor Afx (Foxo4)
Length = 150
Score = 23.1 bits (48), Expect = 4.7
Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 11/107 (10%)
Query: 4 HHKVHTTIQALQAKRKKLLTELAELEAEIKVSSERKSSFNISLSPSLLAEIEEIEYEEKT 63
HH H++ L + +L + + K S R + N S + + IE +
Sbjct: 5 HHHHHSS--GLVPRGSHMLEDPGAVTGPRKGGSRRNAWGNQSYAELISQAIE-------S 55
Query: 64 SKERRINHSVLLSPSFMAKVDEYMKEKGFSNRSLLFEKALEFYMLKH 110
+ E+R+ + + +M + Y K+KG SN S ++ ++ + H
Sbjct: 56 APEKRLTLAQIYE--WMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLH 100
>pdb|1HH2|P Chain P, Crystal Structure Of Nusa From Thermotoga Maritima
Length = 344
Score = 22.7 bits (47), Expect = 6.1
Identities = 13/45 (28%), Positives = 25/45 (54%), Gaps = 4/45 (8%)
Query: 25 LAELEAE----IKVSSERKSSFNISLSPSLLAEIEEIEYEEKTSK 65
L EL+ E +K S + K +L+P+ + E+E ++ E K ++
Sbjct: 262 LKELKGEKLDVLKWSDDPKQLIANALAPATVIEVEILDKENKAAR 306
>pdb|1CQT|A Chain A, Crystal Structure Of A Ternary Complex Containing An
Oca-B Peptide, The Oct-1 Pou Domain, And An Octamer
Element
pdb|1CQT|B Chain B, Crystal Structure Of A Ternary Complex Containing An
Oca-B Peptide, The Oct-1 Pou Domain, And An Octamer
Element
Length = 163
Score = 22.3 bits (46), Expect = 8.0
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 52 AEIEEIEYEEKTSKERRI 69
+++EE+E KT K+RRI
Sbjct: 7 SDLEELEQFAKTFKQRRI 24
>pdb|1HF0|A Chain A, Crystal Structure Of The Dna-Binding Domain Of Oct-1
Bound To Dna As A Dimer
pdb|1HF0|B Chain B, Crystal Structure Of The Dna-Binding Domain Of Oct-1
Bound To Dna As A Dimer
Length = 159
Score = 22.3 bits (46), Expect = 8.0
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 52 AEIEEIEYEEKTSKERRI 69
+++EE+E KT K+RRI
Sbjct: 4 SDLEELEQFAKTFKQRRI 21
>pdb|1ABZ| Alpha-T-Alpha, A De Novo Designed Peptide, Nmr, 23 Structures
Length = 40
Score = 22.3 bits (46), Expect = 8.0
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 6 KVHTTIQALQAKRKKLLTELAELEAEIKVSSER 38
+V +QAL+A+ EL +EA++K ++
Sbjct: 7 RVEQELQALEARGTDSNAELRAMEAKLKAEIQK 39
>pdb|1E3O|C Chain C, Crystal Structure Of Oct-1 Pou Dimer Bound To More
Length = 160
Score = 22.3 bits (46), Expect = 8.0
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 52 AEIEEIEYEEKTSKERRI 69
+++EE+E KT K+RRI
Sbjct: 4 SDLEELEQFAKTFKQRRI 21
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.313 0.127 0.327
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 494,479
Number of Sequences: 13198
Number of extensions: 14764
Number of successful extensions: 37
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 11
length of query: 111
length of database: 2,899,336
effective HSP length: 87
effective length of query: 24
effective length of database: 1,751,110
effective search space: 42026640
effective search space used: 42026640
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 46 (22.3 bits)