BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645241|ref|NP_207411.1| chemotaxis protein (cheV)
[Helicobacter pylori 26695]
(313 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1E6L|A Chain A, Two-Component Signal Transduction Syste... 55 1e-08
pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t >gi... 54 2e-08
pdb|1E6K|A Chain A, Two-Component Signal Transduction Syste... 54 3e-08
pdb|1CYE| Chey Mutant With Met 1 Deleted, Arg 1 Inserted,... 53 5e-08
pdb|1CEY| Chey Complexed With Magnesium (Nmr, 46 Structures) 53 5e-08
pdb|3CHY| CheY >gi|13096520|pdb|1FFG|A Chain A, Chey-Bind... 53 5e-08
pdb|2CHE| Chey Complexed With Mg2+ >gi|515286|pdb|2CHF| ... 53 5e-08
pdb|1EHC| Structure Of Signal Transduction Protein Chey 53 5e-08
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotax... 53 5e-08
pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyper... 53 5e-08
pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp... 52 7e-08
pdb|2CHY| CheY (Mutant With Ser 56 Replaced By Cys) (S56C) 52 9e-08
pdb|5CHY| Structure Of Chemotaxis Protein Chey 52 9e-08
pdb|1VLZ|A Chain A, Chey Mutant With Thr 87 Replaced By Ile... 52 1e-07
pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t >gi... 52 1e-07
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey >g... 51 2e-07
pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant... 50 3e-07
pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Me... 50 3e-07
pdb|1YMV| Signal Transduction Protein Chey Mutant With Ph... 50 3e-07
pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Mo... 50 3e-07
pdb|1E6M|A Chain A, Two-Component Signal Transduction Syste... 50 4e-07
pdb|1HEY| Chey Mutant With Asp 12 Replaced By Gly, Asp 13... 48 1e-06
pdb|1JLK|A Chain A, Crystal Structure Of The Mn(2+)-Bound F... 45 1e-05
pdb|1I3C|A Chain A, Response Regulator For Cyanobacterial P... 42 7e-05
pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylat... 40 3e-04
pdb|1NTR| Solution Structure Of The N-Terminal Receiver D... 40 3e-04
pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylat... 37 0.002
pdb|1FSP| Nmr Solution Structure Of Bacillus Subtilis Spo... 33 0.032
pdb|1F51|F Chain F, A Transient Interaction Between Two Pho... 33 0.042
pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resi... 33 0.042
pdb|1DCK|B Chain B, Structure Of Unphosphorylated Fixj-N Co... 30 0.36
pdb|1A2O|A Chain A, Structural Basis For Methylesterase Che... 29 0.79
pdb|1A04|A Chain A, The Structure Of The NitrateNITRITE RE... 28 1.0
pdb|1BG1|A Chain A, Three-Dimensional Structure Of The Stat... 28 1.8
pdb|1D5W|C Chain C, Phosphorylated Fixj Receiver Domain >gi... 27 2.3
pdb|1QB7|A Chain A, Crystal Structures Of Adenine Phosphori... 26 5.1
pdb|1G9S|A Chain A, Crystal Structure Of A Complex Between ... 26 5.1
pdb|1QS1|A Chain A, Crystal Structure Of Vegetative Insecti... 26 6.7
pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ BEF3-Bound R... 26 6.7
pdb|1A8Y| Crystal Structure Of Calsequestrin From Rabbit ... 26 6.7
pdb|1G8Y|A Chain A, Crystal Structure Of The Hexameric Repl... 26 6.7
pdb|1QS2|A Chain A, Crystal Structure Of Vip2 With Nad 26 6.7
pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domai... 26 6.7
pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprP... 25 8.8
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 54.7 bits (130), Expect = 1e-08
Identities = 37/100 (37%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
Query: 201 LSALKTLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQ--VGVVITDLEMPNISGFEVL 258
+ A T+ +IV+ L L+ L F N E D + Q G VI+D MPN+ G E+L
Sbjct: 9 VDAFSTMRRIVRNL-LKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELL 67
Query: 259 KTIKADHRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVK 298
KTI+AD LPV++ ++ + N A A G+VVK
Sbjct: 68 KTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 107
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 54.3 bits (129), Expect = 2e-08
Identities = 38/106 (35%), Positives = 56/106 (51%), Gaps = 7/106 (6%)
Query: 195 LIAEDSLSALKTLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQ--VGVVITDLEMPNI 252
L+ +D+ T+ +IV+ L L+ L F N E D + Q G VI+D MPN+
Sbjct: 5 LVVDDN----STMRRIVRNL-LKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 59
Query: 253 SGFEVLKTIKADHRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVK 298
G E+LKTI+AD LPV++ ++ + N A A G+VVK
Sbjct: 60 DGLELLKTIRADGAMSALPVLMTTAEAKKENIIAAAQAGASGYVVK 105
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 53.5 bits (127), Expect = 3e-08
Identities = 39/109 (35%), Positives = 58/109 (52%), Gaps = 8/109 (7%)
Query: 192 KLILIAEDSLSALKTLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQ--VGVVITDLEM 249
K +++A+ S T+ +IV+ L L+ L F N E D + Q G VI+D M
Sbjct: 8 KFLVVADFS-----TMRRIVRNL-LKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNM 61
Query: 250 PNISGFEVLKTIKADHRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVK 298
PN+ G E+LKTI+AD LPV++ ++ + N A A G+VVK
Sbjct: 62 PNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 110
>pdb|1CYE| Chey Mutant With Met 1 Deleted, Arg 1 Inserted, And Ala 2 Replaced
By Ser (Del(M1),Ins(R1),A2s) (Nmr, 20 Structures)
Length = 129
Score = 52.8 bits (125), Expect = 5e-08
Identities = 36/95 (37%), Positives = 51/95 (52%), Gaps = 3/95 (3%)
Query: 206 TLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQ--VGVVITDLEMPNISGFEVLKTIKA 263
T+ +IV+ L L+ L F N E D + Q G VI+D MPN+ G E+LKTI+A
Sbjct: 16 TMRRIVRNL-LKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRA 74
Query: 264 DHRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVK 298
D LPV++ ++ + N A A G+VVK
Sbjct: 75 DGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 109
>pdb|1CEY| Chey Complexed With Magnesium (Nmr, 46 Structures)
Length = 128
Score = 52.8 bits (125), Expect = 5e-08
Identities = 36/95 (37%), Positives = 51/95 (52%), Gaps = 3/95 (3%)
Query: 206 TLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQ--VGVVITDLEMPNISGFEVLKTIKA 263
T+ +IV+ L L+ L F N E D + Q G VI+D MPN+ G E+LKTI+A
Sbjct: 15 TMRRIVRNL-LKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRA 73
Query: 264 DHRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVK 298
D LPV++ ++ + N A A G+VVK
Sbjct: 74 DGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 108
>pdb|3CHY| CheY
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1CHN| Chey Complexed With Mg2+ In The Active Site
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
Length = 128
Score = 52.8 bits (125), Expect = 5e-08
Identities = 36/95 (37%), Positives = 51/95 (52%), Gaps = 3/95 (3%)
Query: 206 TLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQ--VGVVITDLEMPNISGFEVLKTIKA 263
T+ +IV+ L L+ L F N E D + Q G VI+D MPN+ G E+LKTI+A
Sbjct: 15 TMRRIVRNL-LKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRA 73
Query: 264 DHRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVK 298
D LPV++ ++ + N A A G+VVK
Sbjct: 74 DGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 108
>pdb|2CHE| Chey Complexed With Mg2+
pdb|2CHF| Chey
Length = 128
Score = 52.8 bits (125), Expect = 5e-08
Identities = 35/95 (36%), Positives = 51/95 (52%), Gaps = 3/95 (3%)
Query: 206 TLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQ--VGVVITDLEMPNISGFEVLKTIKA 263
T+ +IV+ L L+ L F N E D + Q G +I+D MPN+ G E+LKTI+A
Sbjct: 15 TMRRIVRNL-LKELGFNNVEEAEDGVDALNKLQAGGFGFIISDWNMPNMDGLELLKTIRA 73
Query: 264 DHRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVK 298
D LPV++ ++ + N A A G+VVK
Sbjct: 74 DSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 108
>pdb|1EHC| Structure Of Signal Transduction Protein Chey
Length = 128
Score = 52.8 bits (125), Expect = 5e-08
Identities = 36/95 (37%), Positives = 51/95 (52%), Gaps = 3/95 (3%)
Query: 206 TLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQ--VGVVITDLEMPNISGFEVLKTIKA 263
T+ +IV+ L L+ L F N E D + Q G VI+D MPN+ G E+LKTI+A
Sbjct: 15 TMRRIVRNL-LKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRA 73
Query: 264 DHRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVK 298
D LPV++ ++ + N A A G+VVK
Sbjct: 74 DGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 108
>pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
Length = 129
Score = 52.8 bits (125), Expect = 5e-08
Identities = 36/95 (37%), Positives = 51/95 (52%), Gaps = 3/95 (3%)
Query: 206 TLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQ--VGVVITDLEMPNISGFEVLKTIKA 263
T+ +IV+ L L+ L F N E D + Q G VI+D MPN+ G E+LKTI+A
Sbjct: 16 TMRRIVRNL-LKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRA 74
Query: 264 DHRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVK 298
D LPV++ ++ + N A A G+VVK
Sbjct: 75 DGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 109
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 52.8 bits (125), Expect = 5e-08
Identities = 36/95 (37%), Positives = 51/95 (52%), Gaps = 3/95 (3%)
Query: 206 TLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQ--VGVVITDLEMPNISGFEVLKTIKA 263
T+ +IV+ L L+ L F N E D + Q G VI+D MPN+ G E+LKTI+A
Sbjct: 15 TMRRIVRNL-LKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRA 73
Query: 264 DHRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVK 298
D LPV++ ++ + N A A G+VVK
Sbjct: 74 DGAMSALPVLMVTAEAKKENVIAAAQAGASGYVVK 108
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 52.4 bits (124), Expect = 7e-08
Identities = 38/113 (33%), Positives = 59/113 (51%), Gaps = 6/113 (5%)
Query: 188 IQSQKLILIAEDSLSALKTLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQ--VGVVIT 245
++ ++L + D S T+ +IV+ L L+ L F N E D + Q G VI+
Sbjct: 1 MRDKELKFLVVDDFS---TMRRIVRNL-LKELGFNNVEEAEDGVDALNKLQAGGYGFVIS 56
Query: 246 DLEMPNISGFEVLKTIKADHRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVK 298
D MPN+ G E+LKTI+AD LPV++ ++ + N + A G+VVK
Sbjct: 57 DWNMPNMDGLELLKTIRADGAMSALPVLMVTAEADAENIKALAQAGASGYVVK 109
>pdb|2CHY| CheY (Mutant With Ser 56 Replaced By Cys) (S56C)
Length = 128
Score = 52.0 bits (123), Expect = 9e-08
Identities = 35/95 (36%), Positives = 50/95 (51%), Gaps = 3/95 (3%)
Query: 206 TLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQ--VGVVITDLEMPNISGFEVLKTIKA 263
T+ +IV+ L L+ L F N E D + Q G +I D MPN+ G E+LKTI+A
Sbjct: 15 TMRRIVRNL-LKELGFNNVEEAEDGVDALNKLQAGGFGFIICDWNMPNMDGLELLKTIRA 73
Query: 264 DHRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVK 298
D LPV++ ++ + N A A G+VVK
Sbjct: 74 DSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 108
>pdb|5CHY| Structure Of Chemotaxis Protein Chey
Length = 128
Score = 52.0 bits (123), Expect = 9e-08
Identities = 36/95 (37%), Positives = 51/95 (52%), Gaps = 3/95 (3%)
Query: 206 TLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQ--VGVVITDLEMPNISGFEVLKTIKA 263
T+ +IV+ L L+ L F N E D + Q G VI+D MPN+ G E+LKTI+A
Sbjct: 15 TMRRIVRNL-LKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRA 73
Query: 264 DHRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVK 298
D LPV++ ++ + N A A G+VVK
Sbjct: 74 DGAMSALPVLMVTAEAKKENIIAAAQAGASGWVVK 108
>pdb|1VLZ|A Chain A, Chey Mutant With Thr 87 Replaced By Ile (T87i)
pdb|1VLZ|B Chain B, Chey Mutant With Thr 87 Replaced By Ile (T87i)
Length = 128
Score = 51.6 bits (122), Expect = 1e-07
Identities = 36/95 (37%), Positives = 50/95 (51%), Gaps = 3/95 (3%)
Query: 206 TLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQ--VGVVITDLEMPNISGFEVLKTIKA 263
T+ +IV+ L L+ L F N E D + Q G VI+D MPN+ G E+LKTI+A
Sbjct: 15 TMRRIVRNL-LKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRA 73
Query: 264 DHRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVK 298
D LPV++ + + N A A G+VVK
Sbjct: 74 DGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVK 108
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 51.6 bits (122), Expect = 1e-07
Identities = 37/106 (34%), Positives = 55/106 (50%), Gaps = 7/106 (6%)
Query: 195 LIAEDSLSALKTLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQ--VGVVITDLEMPNI 252
L+ +D+ T+ +I + L L+ L F N E D + Q G VI+D MPN+
Sbjct: 5 LVVDDN----STMRRITRNL-LKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 59
Query: 253 SGFEVLKTIKADHRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVK 298
G E+LKTI+AD LPV++ ++ + N A A G+VVK
Sbjct: 60 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 105
>pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 50.8 bits (120), Expect = 2e-07
Identities = 36/95 (37%), Positives = 50/95 (51%), Gaps = 3/95 (3%)
Query: 206 TLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQ--VGVVITDLEMPNISGFEVLKTIKA 263
T+ +IV+ L L+ L F N E D + Q G VI+D MPN+ G E+LKTI+A
Sbjct: 15 TMRRIVRNL-LKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRA 73
Query: 264 DHRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVK 298
D LPV++ + + N A A G+VVK
Sbjct: 74 DGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVK 108
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 50.4 bits (119), Expect = 3e-07
Identities = 36/95 (37%), Positives = 50/95 (51%), Gaps = 3/95 (3%)
Query: 206 TLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQ--VGVVITDLEMPNISGFEVLKTIKA 263
T +IV+ L L+ L F N E D + Q G VI+D MPN+ G E+LKTI+A
Sbjct: 17 TGRRIVRNL-LKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRA 75
Query: 264 DHRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVK 298
D LPV++ ++ + N A A G+VVK
Sbjct: 76 DGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 110
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 50.4 bits (119), Expect = 3e-07
Identities = 35/95 (36%), Positives = 50/95 (51%), Gaps = 3/95 (3%)
Query: 206 TLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQ--VGVVITDLEMPNISGFEVLKTIKA 263
T+ +IV+ L L+ L F N E D + Q G VI+D MPN+ G E+LKTI+A
Sbjct: 15 TMRRIVRNL-LKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRA 73
Query: 264 DHRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVK 298
LPV++ ++ + N A A G+VVK
Sbjct: 74 XXAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 108
>pdb|1YMV| Signal Transduction Protein Chey Mutant With Phe 14 Replaced By
Gly, Ser 15 Replaced By Gly, And Met 17 Replaced By Gly
Length = 129
Score = 50.4 bits (119), Expect = 3e-07
Identities = 36/95 (37%), Positives = 50/95 (51%), Gaps = 3/95 (3%)
Query: 206 TLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQ--VGVVITDLEMPNISGFEVLKTIKA 263
T +IV+ L L+ L F N E D + Q G VI+D MPN+ G E+LKTI+A
Sbjct: 16 TGRRIVRNL-LKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRA 74
Query: 264 DHRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVK 298
D LPV++ ++ + N A A G+VVK
Sbjct: 75 DGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 109
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 50.1 bits (118), Expect = 3e-07
Identities = 35/95 (36%), Positives = 50/95 (51%), Gaps = 3/95 (3%)
Query: 206 TLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQ--VGVVITDLEMPNISGFEVLKTIKA 263
T+ +IV+ L L+ L F N E D + Q G VI+ MPN+ G E+LKTI+A
Sbjct: 15 TMRRIVRNL-LKELGFNNVEEAEDGVDALNKLQAGGYGFVISXWNMPNMDGLELLKTIRA 73
Query: 264 DHRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVK 298
D LPV++ ++ + N A A G+VVK
Sbjct: 74 DGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 108
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 49.7 bits (117), Expect = 4e-07
Identities = 35/95 (36%), Positives = 50/95 (51%), Gaps = 3/95 (3%)
Query: 206 TLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQ--VGVVITDLEMPNISGFEVLKTIKA 263
T+ +IV+ L L+ L F N E D + Q G VI+ MPN+ G E+LKTI+A
Sbjct: 15 TMRRIVRNL-LKELGFNNVEEAEDGVDALNKLQAGGYGFVISAWNMPNMDGLELLKTIRA 73
Query: 264 DHRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVK 298
D LPV++ ++ + N A A G+VVK
Sbjct: 74 DGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 108
>pdb|1HEY| Chey Mutant With Asp 12 Replaced By Gly, Asp 13 Replaced By Asn,
Phe 14 Replaced By Gly, Ser 15 Replaced By Gly, Met 17
Replaced By Gly, Arg 18 Replaced By Lys, Arg 19 Replaced
By Ser, Ile 20 Replaced By Thr, Glu 35 Replaced By Asp
(D12g, D13n,F14g,S15g,M17g,R18k,R19s,I20t,E35d)
(Synchrotron X-Ray Diffraction)
Length = 128
Score = 48.1 bits (113), Expect = 1e-06
Identities = 25/58 (43%), Positives = 35/58 (60%)
Query: 241 GVVITDLEMPNISGFEVLKTIKADHRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVK 298
G VI+D MPN+ G E+LKTI+AD LPV++ ++ + N A A G+VVK
Sbjct: 51 GFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 108
>pdb|1JLK|A Chain A, Crystal Structure Of The Mn(2+)-Bound Form Of Response
Regulator Rcp1
pdb|1JLK|B Chain B, Crystal Structure Of The Mn(2+)-Bound Form Of Response
Regulator Rcp1
Length = 147
Score = 44.7 bits (104), Expect = 1e-05
Identities = 26/124 (20%), Positives = 70/124 (55%), Gaps = 6/124 (4%)
Query: 192 KLILIAEDSLSALKTLEKIVQT--LELRYLAFPNGRELLDYLYEKEHYQ---QVGVVITD 246
K+IL+ EDS + + ++++++T ++ + +G + +L ++ Y+ + +++ D
Sbjct: 9 KVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLD 68
Query: 247 LEMPNISGFEVLKTIKADHRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVKS-NILEIH 305
L +P G EVL IK + + +PV++ ++ ++ + + L + ++ KS N+ ++
Sbjct: 69 LNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLF 128
Query: 306 EMLK 309
+M++
Sbjct: 129 KMVQ 132
>pdb|1I3C|A Chain A, Response Regulator For Cyanobacterial Phytochrome, Rcp1
pdb|1I3C|B Chain B, Response Regulator For Cyanobacterial Phytochrome, Rcp1
Length = 149
Score = 42.4 bits (98), Expect = 7e-05
Identities = 25/117 (21%), Positives = 63/117 (53%), Gaps = 5/117 (4%)
Query: 192 KLILIAEDSLSALKTLEKIVQT--LELRYLAFPNGRELLDYLYEKEHYQ---QVGVVITD 246
K+IL+ EDS + + ++++++T ++ + +G +L ++ Y+ + +++ D
Sbjct: 9 KVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAXAFLQQQGEYENSPRPNLILLD 68
Query: 247 LEMPNISGFEVLKTIKADHRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVKSNILE 303
L +P G EVL IK + + +PV++ ++ ++ + + L + ++ KS L+
Sbjct: 69 LNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLK 125
>pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 40.0 bits (92), Expect = 3e-04
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 193 LILIAEDSLSALKTLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQVGVVITDLEMPNI 252
++ + +D S LE+ + L F NG E+L L K V+++D+ MP +
Sbjct: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASK----TPDVLLSDIRMPGM 60
Query: 253 SGFEVLKTIKADHRTEHLPVIINSSMS 279
G +LK IK H LPVII ++ S
Sbjct: 61 DGLALLKQIKQRH--PMLPVIIMTAHS 85
>pdb|1NTR| Solution Structure Of The N-Terminal Receiver Domain Of Ntrc
Length = 124
Score = 40.0 bits (92), Expect = 3e-04
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 193 LILIAEDSLSALKTLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQVGVVITDLEMPNI 252
++ + +D S LE+ + L F NG E+L L K V+++D+ MP +
Sbjct: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASK----TPDVLLSDIRMPGM 60
Query: 253 SGFEVLKTIKADHRTEHLPVIINSSMS 279
G +LK IK H LPVII ++ S
Sbjct: 61 DGLALLKQIKQRH--PMLPVIIMTAHS 85
>pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 37.4 bits (85), Expect = 0.002
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 193 LILIAEDSLSALKTLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQVGVVITDLEMPNI 252
++ + +D S LE+ + L F NG E+L L K V+++ + MP +
Sbjct: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASK----TPDVLLSXIRMPGM 60
Query: 253 SGFEVLKTIKADHRTEHLPVIINSSMS 279
G +LK IK H LPVII ++ S
Sbjct: 61 DGLALLKQIKQRH--PMLPVIIMTAHS 85
>pdb|1FSP| Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein, 20
Structures
pdb|2FSP| Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
pdb|1NAT| Crystal Structure Of Spoof From Bacillus Subtilis
Length = 124
Score = 33.5 bits (75), Expect = 0.032
Identities = 31/120 (25%), Positives = 57/120 (46%), Gaps = 7/120 (5%)
Query: 194 ILIAEDSLSALKTLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQVGVVITDLEMPNIS 253
ILI +D L ++ + NG + LD + + ++ +V+ D+++P +
Sbjct: 6 ILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTK----ERPDLVLLDMKIPGMD 61
Query: 254 GFEVLKTIKADHRTEHLPVIINSSMSSDSNRQLAQSLEA-DGFVVKSNILEIHEMLKKTL 312
G E+LK +K E++ VII ++ Q ++ L A F +I EI + +KK L
Sbjct: 62 GIEILKRMKV--IDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYL 119
>pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 33.1 bits (74), Expect = 0.042
Identities = 31/120 (25%), Positives = 57/120 (46%), Gaps = 7/120 (5%)
Query: 194 ILIAEDSLSALKTLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQVGVVITDLEMPNIS 253
ILI +D L ++ + NG + LD + + ++ +V+ D+++P +
Sbjct: 4 ILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTK----ERPDLVLLDMKIPGMD 59
Query: 254 GFEVLKTIKADHRTEHLPVIINSSMSSDSNRQLAQSLEA-DGFVVKSNILEIHEMLKKTL 312
G E+LK +K E++ VII ++ Q ++ L A F +I EI + +KK L
Sbjct: 60 GIEILKRMKV--IDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYL 117
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
Length = 124
Score = 33.1 bits (74), Expect = 0.042
Identities = 31/120 (25%), Positives = 57/120 (46%), Gaps = 7/120 (5%)
Query: 194 ILIAEDSLSALKTLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQVGVVITDLEMPNIS 253
ILI +D L ++ + NG + LD + + ++ +V+ D+++P +
Sbjct: 6 ILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTK----ERPDLVLLDMKIPGMD 61
Query: 254 GFEVLKTIKADHRTEHLPVIINSSMSSDSNRQLAQSLEA-DGFVVKSNILEIHEMLKKTL 312
G E+LK +K E++ VII ++ Q ++ L A F +I EI + +KK L
Sbjct: 62 GIEILKRMKV--IDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYL 119
>pdb|1DCK|B Chain B, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DBW|B Chain B, Crystal Structure Of Fixj-N
pdb|1DBW|A Chain A, Crystal Structure Of Fixj-N
pdb|1DCK|A Chain A, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCM|B Chain B, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
pdb|1DCM|A Chain A, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
Length = 126
Score = 30.0 bits (66), Expect = 0.36
Identities = 11/21 (52%), Positives = 18/21 (85%)
Query: 241 GVVITDLEMPNISGFEVLKTI 261
GV++TDL MP++SG E+L+ +
Sbjct: 49 GVLVTDLRMPDMSGVELLRNL 69
>pdb|1A2O|A Chain A, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
pdb|1A2O|B Chain B, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
Length = 349
Score = 28.9 bits (63), Expect = 0.79
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 242 VVITDLEMPNISGFEVLKTIKADHRTEHLPVIINSSMSSDSNRQLAQSLE--ADGFVVKS 299
V+ D+EMP + G + L+ + R +PV++ SS++ + ++LE A FV K
Sbjct: 52 VLTLDVEMPRMDGLDFLEKLM---RLRPMPVVMVSSLTGKGSEVTLRALELGAIDFVTKP 108
Query: 300 NI 301
+
Sbjct: 109 QL 110
>pdb|1A04|A Chain A, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
Protein Narl In The Monoclinic C2 Crystal Form
pdb|1A04|B Chain B, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
Protein Narl In The Monoclinic C2 Crystal Form
pdb|1RNL| The NitrateNITRITE RESPONSE REGULATOR PROTEIN NARL FROM Narl
Length = 215
Score = 28.5 bits (62), Expect = 1.0
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 242 VVITDLEMPNISGFEVLKTIKADHRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVKSNI 301
+++ DL MP ++G E L ++ + + V S+ D L + ADG+++K
Sbjct: 54 LILLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRG--ADGYLLKD-- 109
Query: 302 LEIHEMLK 309
+E ++LK
Sbjct: 110 MEPEDLLK 117
>pdb|1BG1|A Chain A, Three-Dimensional Structure Of The Stat3b Homodimer Bound
To Dna
Length = 722
Score = 27.7 bits (60), Expect = 1.8
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 89 SRDLKECSVKDDHNLVIVCHFSNHSIALKVLKIERIIHK-NWTE------ISAGDKQGIN 141
SR L+E +V HNL + F K ++I RI+ + W E + +QG
Sbjct: 69 SRFLQESNVLYQHNLRRIKQFLQSRYLEKPMEIARIVARCLWEESRLLQTAATAAQQGGQ 128
Query: 142 EEGKLSAITRFDEERVVQIL-DVEKMISDVFPSLKDLDDL 180
+A+ ++ + Q L DV K + D+ +K +++L
Sbjct: 129 ANHPTAAVVTEKQQMLEQHLQDVRKRVQDLEQKMKVVENL 168
>pdb|1D5W|C Chain C, Phosphorylated Fixj Receiver Domain
pdb|1D5W|B Chain B, Phosphorylated Fixj Receiver Domain
pdb|1D5W|A Chain A, Phosphorylated Fixj Receiver Domain
Length = 126
Score = 27.3 bits (59), Expect = 2.3
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 241 GVVITDLEMPNISGFEVLKTI 261
GV++T L MP++SG E+L+ +
Sbjct: 49 GVLVTXLRMPDMSGVELLRNL 69
>pdb|1QB7|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani.
pdb|1QCC|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QB8|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCD|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
Length = 236
Score = 26.2 bits (56), Expect = 5.1
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 52 EILGGSDGVMLGFLSVRGESIPLVDVKRWLHYNANDPSRDLKECSVKDDHNL 103
+++ SD V++ +S+ SIP + +H AN +D+K S+ D L
Sbjct: 159 QLVEASDAVVVEMVSIL--SIPFLKAAEKIHSTANSRYKDIKFISLLSDDAL 208
>pdb|1G9S|A Chain A, Crystal Structure Of A Complex Between E.Coli Hprt And Imp
pdb|1G9S|B Chain B, Crystal Structure Of A Complex Between E.Coli Hprt And Imp
pdb|1G9T|A Chain A, Crystal Structure Of E.Coli Hprt-Gmp Complex
pdb|1G9T|B Chain B, Crystal Structure Of E.Coli Hprt-Gmp Complex
Length = 182
Score = 26.2 bits (56), Expect = 5.1
Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 12/100 (12%)
Query: 174 LKDLDDLTLRCIEAIQSQKLILIAEDSLSALKTLEKIVQTLELRYLAFPNGRELLDYLYE 233
LKDLD E I+ K +LI ED + + TL K+ + L LR P + L +
Sbjct: 87 LKDLD-------EDIRG-KDVLIVEDIIDSGNTLSKVREILSLRE---PKSLAICT-LLD 134
Query: 234 KEHYQQVGVVITDLEMPNISGFEVLKTIKADHRTEHLPVI 273
K ++V V + + F V I R HLP I
Sbjct: 135 KPSRREVNVPVEFIGFSIPDEFVVGYGIDYAQRYRHLPYI 174
>pdb|1QS1|A Chain A, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|B Chain B, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|C Chain C, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|D Chain D, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
Length = 462
Score = 25.8 bits (55), Expect = 6.7
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 167 ISDVFPSLKDLDDLTLRCIEAIQSQKLILIAEDSLSALKTLEKIVQTLEL------RYLA 220
ISD PSLKD ++ L I+ + ++ + L+A + KI+ L++ YL+
Sbjct: 360 ISDPLPSLKDFEEQFLNTIKEDKGYMSTSLSSERLAAFGS-RKIILRLQVPKGSTGAYLS 418
Query: 221 ----FPNGRELLDYLYEKEHYQQVGVVI 244
F + +E+L K H +V VI
Sbjct: 419 AIGGFASEKEILLDKDSKYHIDKVTEVI 446
>pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ BEF3-Bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Y|B Chain B, Crystal Structure Of Mg2+ BEF3-Bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Z|A Chain A, Crystal Structure Of The E121k Substitution Of The
Receiver Domain Of Sinorhizobium Meliloti Dctd
Length = 155
Score = 25.8 bits (55), Expect = 6.7
Identities = 15/70 (21%), Positives = 31/70 (43%), Gaps = 4/70 (5%)
Query: 194 ILIAEDSLSALKTLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQVGVVITDLEMPNIS 253
+ + +D K +++ ++ +F + E L L G+VI+D+ MP +
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSA----DFAGIVISDIRMPGMD 61
Query: 254 GFEVLKTIKA 263
G + + I A
Sbjct: 62 GLALFRKILA 71
>pdb|1A8Y| Crystal Structure Of Calsequestrin From Rabbit Skeletal Muscle
Sarcoplasmic Reticulum At 2.4 A Resolution
Length = 367
Score = 25.8 bits (55), Expect = 6.7
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 14/67 (20%)
Query: 24 LDAEKDAQLY---------GMNIFKIREIIHYDGEVTEILGGSDGVMLGFLSVRGESIPL 74
+D+EKDA + + +FK E+I YDGE + +D ++ L V + + L
Sbjct: 75 VDSEKDAAVAKKLGLTEEDSIYVFKEDEVIEYDGEFS-----ADTLVEFLLDVLEDPVEL 129
Query: 75 VDVKRWL 81
++ +R L
Sbjct: 130 IEGEREL 136
>pdb|1G8Y|A Chain A, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|B Chain B, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|C Chain C, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|D Chain D, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|E Chain E, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|F Chain F, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|G Chain G, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|H Chain H, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|I Chain I, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|J Chain J, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|K Chain K, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|L Chain L, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
Length = 279
Score = 25.8 bits (55), Expect = 6.7
Identities = 18/63 (28%), Positives = 28/63 (43%), Gaps = 5/63 (7%)
Query: 44 IHYDGEVTEILGGSDGVMLGFLSVRGESIPLVDVKRWLHYNANDPSRDLKECSVKDDHNL 103
+H+ + ++G D RG S+ LVD RW Y ++ S + +E V DD
Sbjct: 177 LHHASKGAAMMGAGDQQQAS----RGSSV-LVDNIRWQSYLSSMTSAEAEEWGVDDDQRR 231
Query: 104 VIV 106
V
Sbjct: 232 FFV 234
>pdb|1QS2|A Chain A, Crystal Structure Of Vip2 With Nad
Length = 401
Score = 25.8 bits (55), Expect = 6.7
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 167 ISDVFPSLKDLDDLTLRCIEAIQSQKLILIAEDSLSALKTLEKIVQTLEL------RYLA 220
ISD PSLKD ++ L I+ + ++ + L+A + KI+ L++ YL+
Sbjct: 299 ISDPLPSLKDFEEQFLNTIKEDKGYMSTSLSSERLAAFGS-RKIILRLQVPKGSTGAYLS 357
Query: 221 ----FPNGRELLDYLYEKEHYQQVGVVI 244
F + +E+L K H +V VI
Sbjct: 358 AIGGFASEKEILLDKDSKYHIDKVTEVI 385
>pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domain And Linker Region
Of Dctd From Sinorhizobium Meliloti
Length = 155
Score = 25.8 bits (55), Expect = 6.7
Identities = 15/70 (21%), Positives = 31/70 (43%), Gaps = 4/70 (5%)
Query: 194 ILIAEDSLSALKTLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQVGVVITDLEMPNIS 253
+ + +D K +++ ++ +F + E L L G+VI+D+ MP +
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSA----DFAGIVISDIRMPGMD 61
Query: 254 GFEVLKTIKA 263
G + + I A
Sbjct: 62 GLALFRKILA 71
>pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
Thermotoga Maritima
Length = 225
Score = 25.4 bits (54), Expect = 8.8
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 242 VVITDLEMPNISGFEVLKTIKADHRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVK 298
VVI D+ +P G+E+LK+ + + PV+ +++S R + AD ++ K
Sbjct: 49 VVILDIXLPVHDGWEILKSXR--ESGVNTPVLXLTALSDVEYRVKGLNXGADDYLPK 103
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.137 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,701,232
Number of Sequences: 13198
Number of extensions: 67375
Number of successful extensions: 268
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 241
Number of HSP's gapped (non-prelim): 45
length of query: 313
length of database: 2,899,336
effective HSP length: 88
effective length of query: 225
effective length of database: 1,737,912
effective search space: 391030200
effective search space used: 391030200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)