BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644693|ref|NP_206863.1| hypothetical protein
[Helicobacter pylori 26695]
(496 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1H2V|C Chain C, Structure Of The Human Nuclear Cap-Bind... 27 4.0
pdb|1ISO| Isocitrate Dehydrogenase: Structure Of An Engin... 27 5.3
pdb|1M1J|A Chain A, Crystal Structure Of Native Chicken Fib... 27 6.9
pdb|1EI3|A Chain A, Crystal Structure Of Native Chicken Fib... 27 6.9
pdb|1DF0|A Chain A, Crystal Structure Of M-Calpain 27 6.9
pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Co... 27 6.9
pdb|1JSM|B Chain B, Structure Of H5 Avian Haemagglutinin >g... 26 9.0
>pdb|1H2V|C Chain C, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
Length = 771
Score = 27.3 bits (59), Expect = 4.0
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 19 REFKRSLQEEKCSPFIKDLDSYALKIIVERRKIEHQLQEAIEKLRRAKKKRS 70
R+F R E I+ ++ + LKI + +L+EA EKL R K+RS
Sbjct: 611 RDFTRLFVWEILHSTIRKMNKHVLKI-------QKELEEAKEKLARQHKRRS 655
>pdb|1ISO| Isocitrate Dehydrogenase: Structure Of An Engineered Nadp+ -->
Nad+ Specificity-Reversal Mutant
Length = 416
Score = 26.9 bits (58), Expect = 5.3
Identities = 18/56 (32%), Positives = 28/56 (49%), Gaps = 4/56 (7%)
Query: 3 EWKTDTEEVKEVVKKCRE---FKRSLQEEKCSPFIKDLDSYALKIIVERRKIEHQL 55
EWK D+ + ++V+K RE K+ E C IK + K +V R IE+ +
Sbjct: 164 EWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPMSEEGTKRLV-RAAIEYAI 218
>pdb|1M1J|A Chain A, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
pdb|1M1J|D Chain D, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
Length = 491
Score = 26.6 bits (57), Expect = 6.9
Identities = 13/56 (23%), Positives = 25/56 (44%)
Query: 303 KNCVKNCKKALGDFTEKIKESPNDLNAINEAFNHLETELERATENLSQKIAPILER 358
+N K + + + +K ++E + H+ TEL R L Q++A + R
Sbjct: 78 QNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNR 133
>pdb|1EI3|A Chain A, Crystal Structure Of Native Chicken Fibrinogen
pdb|1EI3|D Chain D, Crystal Structure Of Native Chicken Fibrinogen
Length = 491
Score = 26.6 bits (57), Expect = 6.9
Identities = 13/56 (23%), Positives = 25/56 (44%)
Query: 303 KNCVKNCKKALGDFTEKIKESPNDLNAINEAFNHLETELERATENLSQKIAPILER 358
+N K + + + +K ++E + H+ TEL R L Q++A + R
Sbjct: 78 QNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNR 133
>pdb|1DF0|A Chain A, Crystal Structure Of M-Calpain
Length = 700
Score = 26.6 bits (57), Expect = 6.9
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 10/100 (10%)
Query: 168 ASEAIDNEYNIAPPEILNESDFESPTIVYNPKKSVYDEHLKDLREDFSFSLYADLKNRIN 227
A E D N+ E+LN F+ P Y S ++ H DF ++++ K
Sbjct: 458 ARERSDTFINLR--EVLNR--FKLPPGEYVLVPSTFEPHKNG---DFCIRVFSEKKADYQ 510
Query: 228 ASSKLDRTTTSKEQEFEKNLEDLMPGFRGGTDTLSGDELE 267
+D + +E E N ED+ GFR L+G++ E
Sbjct: 511 T---VDDEIEANIEEIEANEEDIGDGFRRLFAQLAGEDAE 547
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 26.6 bits (57), Expect = 6.9
Identities = 23/81 (28%), Positives = 39/81 (47%), Gaps = 12/81 (14%)
Query: 312 ALGDFTEKIKESPNDLNAINEAFNHLETELERATENLSQKIAPILERYENDKRQKLGYGE 371
A G + K +E+ N L+A +LET +E+ L R + DK++ L + E
Sbjct: 79 ATGGGSVKSRETRNRLSARGVVV-YLETTIEKQ-----------LARTQRDKKRPLLHVE 126
Query: 372 FLEKEKEGFMVDEQNPYPEEV 392
+E + +E+NP EE+
Sbjct: 127 TPPREVLEALANERNPLYEEI 147
>pdb|1JSM|B Chain B, Structure Of H5 Avian Haemagglutinin
pdb|1JSN|B Chain B, Structure Of Avian H5 Haemagglutinin Complexed With Lsta
Receptro Analog
pdb|1JSO|B Chain B, Structure Of Avian H5 Haemagglutinin Bound To Lstc
Receptor Analog
Length = 176
Score = 26.2 bits (56), Expect = 9.0
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 145 KSVKKSLDFYTDKHQEFIKRLNYASEAIDNEYN 177
+S +K++D T+K I ++N EA+ E+N
Sbjct: 39 ESTQKAIDGTTNKVNSIIDKMNTQFEAVGKEFN 71
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.314 0.133 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,878,834
Number of Sequences: 13198
Number of extensions: 120053
Number of successful extensions: 318
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 313
Number of HSP's gapped (non-prelim): 8
length of query: 496
length of database: 2,899,336
effective HSP length: 92
effective length of query: 404
effective length of database: 1,685,120
effective search space: 680788480
effective search space used: 680788480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)