BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645242|ref|NP_207412.1| aspartyl-tRNA synthetase
(aspS) [Helicobacter pylori 26695]
(577 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspart... 539 e-154
pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna... 539 e-154
pdb|1L0W|A Chain A, Aspartyl-Trna Synthetase-1 From Space-G... 521 e-149
pdb|1B8A|A Chain A, Aspartyl-Trna Synthetase >gi|4388837|pd... 152 1e-37
pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed ... 104 2e-23
pdb|1E24|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal ... 99 2e-21
pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (... 86 9e-18
pdb|1ASZ|A Chain A, Aspartyl Trna Synthetase (Asprs) (E.C.6... 86 9e-18
pdb|1WHO| Allergen Phl P 2 >gi|2392605|pdb|1WHP| Allerge... 29 1.3
pdb|1I5D|A Chain A, Structure Of Chea Domain P4 In Complex ... 29 1.3
pdb|1I58|A Chain A, Structure Of The Histidine Kinase Chea ... 29 1.3
pdb|2PLC| Phosphatidylinositol-Specific Phospholipase C F... 28 2.1
pdb|1AOD| Phosphatidylinositol-Specific Phospholipase C F... 28 2.1
pdb|1DOT| Mol_id: 1; Molecule: Duck Ovotransferrin; Chain... 28 2.1
pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile... 28 2.8
pdb|1B3Q|B Chain B, Crystal Structure Of Chea-289, A Signal... 28 3.7
pdb|1ICP|A Chain A, Crystal Structure Of 12-Oxophytodienoat... 27 4.8
pdb|1IU8|A Chain A, The X-Ray Crystal Structure Of Pyrrolid... 27 6.2
pdb|1KRS| Mol_id: 1; Molecule: Lysyl-Trna Synthetase (Pro... 27 8.2
>pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase
: Trnaasp : Aspartyl-Adenylate Complex
Length = 585
Score = 539 bits (1389), Expect = e-154
Identities = 291/589 (49%), Positives = 392/589 (66%), Gaps = 16/589 (2%)
Query: 1 MRSHFCTEISEKDVGKIVKVAGWCNTYRDHGGVVFIDLRDKSGLVQLVCDPS-SKAYEKA 59
MR+ +C ++ VG+ V + GW N RD G ++FID+RD+ G+VQ+ DP + A + A
Sbjct: 1 MRTEYCGQLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRADALKLA 60
Query: 60 LEVRSEFVLVAKGKVRLRGAGLENPKLKTGKIEIVLEELIIENKSATPPIEIGNKHVN-E 118
E+R+EF + G VR R N + TG+IE++ L I N++ P++ + HVN E
Sbjct: 61 SELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRADVLPLD--SNHVNTE 118
Query: 119 DLRLKYRYLDLRSPNSYEIFKLRSEVALITRNTLAQKGFLEIETPILSKTTPEGARDYLV 178
+ RLKYRYLDLR P + K R+++ + R + GFL+IETP+L+K TPEGARDYLV
Sbjct: 119 EARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLV 178
Query: 179 PSRVHEGEFFALPQSPQLFKQLLMVGGMDRYFQIARCFRDEDLRADRQPEFTQIDAEMSF 238
PSRVH+G+F+ALPQSPQLFKQLLM+ G DRY+QI +CFRDEDLRADRQPEFTQID E SF
Sbjct: 179 PSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSF 238
Query: 239 CDENDVMGVVEDLLQEIFKAVGHTISKPFKRMPYKEAMENYGSDKPDLRFELPLIEVGDC 298
V V+E L++ ++ V F M + EA YGSDKPDLR + L +V D
Sbjct: 239 MTAPQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAERRYGSDKPDLRNPMELTDVADL 298
Query: 299 FRDSSNAIFSNTAKDPKNKRIKALNVKGADALFSRSVLKELEEFVRQFGAKGLAYLQIKE 358
+ A+F+ A DPK R+ AL V G +L +R + E FV+ +GAKGLAY+++ E
Sbjct: 299 LKSVEFAVFAGPANDPKG-RVAALRVPGGASL-TRKQIDEYGNFVKIYGAKGLAYIKVNE 356
Query: 359 -----DEIKGPLVKFLSEKGLKNILERTDAQVGDIVFFGAGDKKIVLDYMGRLRLKVAET 413
+ I P+ KFL+ + +++IL+RT AQ GD++FFGA +KKIV D MG LRLKV +
Sbjct: 357 RAKGLEGINSPVAKFLNAEIIEDILDRTAAQDGDMIFFGADNKKIVADAMGALRLKVGKD 416
Query: 414 LDLIDKDALNFLWVVNFPMFEKT-ENGYHAAHHPFTMPKNIECEDI----EEVEAHAYDV 468
L L D+ LWV++FPMFE E G A HHPFT PK++ ++ E A+AYD+
Sbjct: 417 LGLTDESKWAPLWVIDFPMFEDDGEGGLTAMHHPFTSPKDMTAAELKAAPENAVANAYDM 476
Query: 469 VLNGVELGGGSIRIHKEEMQKKVFEKINIHEEEAQKKFGFLLEALKFGAPPHGGFAIGFD 528
V+NG E+GGGS+RIH +MQ+ VF + I+EEE ++KFGFLL+ALK+G PPH G A G D
Sbjct: 477 VINGYEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLD 536
Query: 529 RLIMLMTKSHSIRDVIAFPKTQKASCLLTNAPSPINEEQLRELHIRLRK 577
RL ML+T + +IRDVIAFPKT A+CL+T APS N L EL I++ K
Sbjct: 537 RLTMLLTGTDNIRDVIAFPKTTAAACLMTEAPSFANPTALAELSIQVVK 585
>pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|B Chain B, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|C Chain C, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1IL2|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
pdb|1IL2|B Chain B, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
Length = 590
Score = 539 bits (1389), Expect = e-154
Identities = 291/589 (49%), Positives = 392/589 (66%), Gaps = 16/589 (2%)
Query: 1 MRSHFCTEISEKDVGKIVKVAGWCNTYRDHGGVVFIDLRDKSGLVQLVCDPS-SKAYEKA 59
MR+ +C ++ VG+ V + GW N RD G ++FID+RD+ G+VQ+ DP + A + A
Sbjct: 1 MRTEYCGQLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRADALKLA 60
Query: 60 LEVRSEFVLVAKGKVRLRGAGLENPKLKTGKIEIVLEELIIENKSATPPIEIGNKHVN-E 118
E+R+EF + G VR R N + TG+IE++ L I N++ P++ + HVN E
Sbjct: 61 SELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRADVLPLD--SNHVNTE 118
Query: 119 DLRLKYRYLDLRSPNSYEIFKLRSEVALITRNTLAQKGFLEIETPILSKTTPEGARDYLV 178
+ RLKYRYLDLR P + K R+++ + R + GFL+IETP+L+K TPEGARDYLV
Sbjct: 119 EARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLV 178
Query: 179 PSRVHEGEFFALPQSPQLFKQLLMVGGMDRYFQIARCFRDEDLRADRQPEFTQIDAEMSF 238
PSRVH+G+F+ALPQSPQLFKQLLM+ G DRY+QI +CFRDEDLRADRQPEFTQID E SF
Sbjct: 179 PSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSF 238
Query: 239 CDENDVMGVVEDLLQEIFKAVGHTISKPFKRMPYKEAMENYGSDKPDLRFELPLIEVGDC 298
V V+E L++ ++ V F M + EA YGSDKPDLR + L +V D
Sbjct: 239 MTAPQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAERRYGSDKPDLRNPMELTDVADL 298
Query: 299 FRDSSNAIFSNTAKDPKNKRIKALNVKGADALFSRSVLKELEEFVRQFGAKGLAYLQIKE 358
+ A+F+ A DPK R+ AL V G +L +R + E FV+ +GAKGLAY+++ E
Sbjct: 299 LKSVEFAVFAGPANDPKG-RVAALRVPGGASL-TRKQIDEYGNFVKIYGAKGLAYIKVNE 356
Query: 359 -----DEIKGPLVKFLSEKGLKNILERTDAQVGDIVFFGAGDKKIVLDYMGRLRLKVAET 413
+ I P+ KFL+ + +++IL+RT AQ GD++FFGA +KKIV D MG LRLKV +
Sbjct: 357 RAKGLEGINSPVAKFLNAEIIEDILDRTAAQDGDMIFFGADNKKIVADAMGALRLKVGKD 416
Query: 414 LDLIDKDALNFLWVVNFPMFEKT-ENGYHAAHHPFTMPKNIECEDI----EEVEAHAYDV 468
L L D+ LWV++FPMFE E G A HHPFT PK++ ++ E A+AYD+
Sbjct: 417 LGLTDESKWAPLWVIDFPMFEDDGEGGLTAMHHPFTSPKDMTAAELKAAPENAVANAYDM 476
Query: 469 VLNGVELGGGSIRIHKEEMQKKVFEKINIHEEEAQKKFGFLLEALKFGAPPHGGFAIGFD 528
V+NG E+GGGS+RIH +MQ+ VF + I+EEE ++KFGFLL+ALK+G PPH G A G D
Sbjct: 477 VINGYEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLD 536
Query: 529 RLIMLMTKSHSIRDVIAFPKTQKASCLLTNAPSPINEEQLRELHIRLRK 577
RL ML+T + +IRDVIAFPKT A+CL+T APS N L EL I++ K
Sbjct: 537 RLTMLLTGTDNIRDVIAFPKTTAAACLMTEAPSFANPTALAELSIQVVK 585
>pdb|1L0W|A Chain A, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
pdb|1L0W|B Chain B, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
pdb|1G51|A Chain A, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1G51|B Chain B, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1EFW|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1EFW|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
Length = 580
Score = 521 bits (1343), Expect = e-149
Identities = 290/584 (49%), Positives = 385/584 (65%), Gaps = 27/584 (4%)
Query: 2 RSHFCTEISEKDVGKIVKVAGWCNTYRDHGGVVFIDLRDKSGLVQLVCDPSSKAYEKALE 61
R+H+ + E VG+ V + GW N RD GG++F+DLRD+ GLVQLV P+S AY A
Sbjct: 3 RTHYAGSLRETHVGEEVVLEGWVNRRRDLGGLIFLDLRDREGLVQLVAHPASPAYATAER 62
Query: 62 VRSEFVLVAKGKVRLRGAGLENPKLKTGKIEIVLEELIIENKSATPPIEIG-------NK 114
VR E+V+ AKG VRLR NP+L TG++E+ L L + ++ TPP + K
Sbjct: 63 VRPEWVVRAKGLVRLRPE--PNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEEK 120
Query: 115 HVNEDLRLKYRYLDLRSPNSYEIFKLRSEVALITRNTLAQKGFLEIETPILSKTTPEGAR 174
+E+LRLKYRYLDLR E +LR V + L ++GF+++ETP L+K+TPEGAR
Sbjct: 121 EASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGAR 180
Query: 175 DYLVPSRVHEGEFFALPQSPQLFKQLLMVGGMDRYFQIARCFRDEDLRADRQPEFTQIDA 234
D+LVP R G F+ALPQSPQLFKQ+LMV G+DRYFQIARCFRDEDLRADRQP+FTQ+D
Sbjct: 181 DFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFTQLDL 240
Query: 235 EMSFCDENDVMGVVEDLLQEIFK-AVGHTISKPFKRMPYKEAMENYGSDKPDLRFELPLI 293
EMSF + DV+ + E L+ +F+ A+G + PF R+ Y+EAME YGSDKPDLRF L L
Sbjct: 241 EMSFVEVEDVLELNERLMAHVFREALGVELPLPFPRLSYEEAMERYGSDKPDLRFGLELK 300
Query: 294 EVGDCFRDSSNAIFSNTAKDPKNKRIKALNVKGADALFSRSVLKELEEFVRQFGAKGLAY 353
EVG FR S +F + +KAL + A SR + ELEE ++ A+GLA+
Sbjct: 301 EVGPLFRQSGFRVFQEA------ESVKALALPKA---LSRKEVAELEEVAKRHKAQGLAW 351
Query: 354 LQIKEDEIKGPLVKFLSEKGLKNILERTDAQVGDIVFFGAGDKKIVLDYMGRLRLKVAET 413
+++E G + KFL E + +L+ T+A+ GD + F AG +K+ +G +RL+ A+
Sbjct: 352 ARVEEGGFSGGVAKFL-EPVREALLQATEARPGDTLLFVAGPRKVAATALGAVRLRAADL 410
Query: 414 LDLIDKDALNFLWVVNFPMFE--KTENGYHAAHHPFTMPKNIECEDIEE----VEAHAYD 467
L L ++ FLWVV+FP+ E + E + HHPFT P + +E+ V A AYD
Sbjct: 411 LGL-KREGFRFLWVVDFPLLEWDEEEEAWTYMHHPFTSPHPEDLPLLEKDPGRVRALAYD 469
Query: 468 VVLNGVELGGGSIRIHKEEMQKKVFEKINIHEEEAQKKFGFLLEALKFGAPPHGGFAIGF 527
+VLNGVE+GGGSIRIH +Q +VF + I EEE ++KFGF LEAL++GAPPHGG A G
Sbjct: 470 LVLNGVEVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGL 529
Query: 528 DRLIMLMTKSHSIRDVIAFPKTQKASCLLTNAPSPINEEQLREL 571
DRL+ LMT S SIR+VIAFPK ++ LT APSP+ EEQLREL
Sbjct: 530 DRLLALMTGSPSIREVIAFPKNKEGKDPLTGAPSPVPEEQLREL 573
>pdb|1B8A|A Chain A, Aspartyl-Trna Synthetase
pdb|1B8A|B Chain B, Aspartyl-Trna Synthetase
Length = 438
Score = 152 bits (384), Expect = 1e-37
Identities = 110/312 (35%), Positives = 167/312 (53%), Gaps = 36/312 (11%)
Query: 2 RSHFCTEISEKDVGKIVKVAGWCNTYRDHGGVVFIDLRDKSGLVQLVCDPSSKA----YE 57
R+H+ +EI+E+ G+ VKVAGW +D GG+ F+ +RD+ G+VQ+ P K ++
Sbjct: 3 RTHYSSEITEELNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQITA-PKKKVDPELFK 61
Query: 58 KALEVRSEFVLVAKGKVRLRGAGLENPKLKTGKIEIVLEELIIENKSATP-PIE-IGNKH 115
++RSE V+ +G V PK K G EI+ E++++ N++ TP P++ G
Sbjct: 62 LIPKLRSEDVVAVEGVVNF------TPKAKLG-FEILPEKIVVLNRAETPLPLDPTGKVK 114
Query: 116 VNEDLRLKYRYLDLRSPNSYEIFKLRSEVALITRNTLAQKGFLEIETPILSKTTPEGARD 175
D RL R++DLR P IFK+RS V R+ + GF+EI TP + T EG +
Sbjct: 115 AELDTRLNNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTE 174
Query: 176 YLVPSRVHEGEFFALPQSPQLFKQLLMVGGMDRYFQIARCFRDEDLRADRQ-PEFTQIDA 234
L P + E + F L +SPQL+K+++M G+DR ++IA FR E+ R E ID+
Sbjct: 175 -LFPMKYFEEDAF-LAESPQLYKEIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDS 232
Query: 235 EMSFC-DENDVMGVVEDLLQEIFKAVGHTISK--------------PFKRMPYKEAMENY 279
EM+F DE +VM +E L+ V +K PF R+ Y +A+E
Sbjct: 233 EMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFELEEPKLPFPRVSYDKALEIL 292
Query: 280 GSDKPDLRFELP 291
G DL E+P
Sbjct: 293 G----DLGKEIP 300
Score = 63.5 bits (153), Expect = 6e-11
Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 4/87 (4%)
Query: 465 AYDVVLNGVELGGGSIRIHKEEMQKKVFEKINIHEEEAQKKFGFLLEALKFGAPPHGGFA 524
A+D+ GVE+ G R H+ ++ + ++ ++ E F F L+A ++G PPHGGF
Sbjct: 352 AFDLEYRGVEISSGGQREHRHDILVEQIKEKGLNPES----FEFYLKAFRYGMPPHGGFG 407
Query: 525 IGFDRLIMLMTKSHSIRDVIAFPKTQK 551
+G +RLI M +IR+VI FP+ ++
Sbjct: 408 LGAERLIKQMLDLPNIREVILFPRDRR 434
>pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine
pdb|1BBW|A Chain A, Lysyl-Trna Synthetase (Lyss)
Length = 504
Score = 104 bits (260), Expect = 2e-23
Identities = 83/280 (29%), Positives = 142/280 (50%), Gaps = 29/280 (10%)
Query: 18 VKVAGWCNTYRDHGGVVFIDLRDKSGLVQLVCD----PSSKAYEKALEVRSEFVLVAKGK 73
V VAG T R G F+ L+D G +QL P E+ + +L AKGK
Sbjct: 67 VAVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDDLPEGVYNEQFKKWDLGDILGAKGK 126
Query: 74 VRLRGAGLENPKLKTGKIEIVLEELIIENKSATPPIEIGNKHVNEDLRLKYRYLDLRSPN 133
+ K KTG++ I EL + K+ P + + +++ R + RYLDL S +
Sbjct: 127 LF---------KTKTGELSIHCTELRLLTKALRPLPDKFHGLQDQEARYRQRYLDLISND 177
Query: 134 -SYEIFKLRSEVALITRNTLAQKGFLEIETPILSKTTPEGA--RDYLVPSRVHEGEFFAL 190
S FK+RS++ R + +GF+E+ETP++ + P GA R ++ + + + L
Sbjct: 178 ESRNTFKVRSQILSGIRQFMVNRGFMEVETPMM-QVIPGGAAARPFITHHNALDLDMY-L 235
Query: 191 PQSPQLFKQLLMVGGMDRYFQIARCFRDEDLRADRQPEFTQIDAEMSFCDENDVMGVVED 250
+P+L+ + L+VGG +R F+I R FR+E + PEFT ++ M++ D D++ + E
Sbjct: 236 RIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYKDLIELTES 295
Query: 251 LLQEIFKAV-GHT----------ISKPFKRMPYKEAMENY 279
L + + + + G T KPF+++ +EA++ Y
Sbjct: 296 LFRTLAQDILGKTEVTYGDVTLDFGKPFEKLTMREAIKKY 335
Score = 55.1 bits (131), Expect = 2e-08
Identities = 32/95 (33%), Positives = 48/95 (49%), Gaps = 4/95 (4%)
Query: 457 DIEEVEAHAYDVVLNGVELGGGSIRIHKEEMQKKVF----EKINIHEEEAQKKFGFLLEA 512
D+ ++ + G E+G G ++ E Q + F + ++EA + A
Sbjct: 404 DVNPEITDRFEFFIGGREIGNGFSELNDAEDQAQRFLDQVAAKDAGDDEAMFYDEDYVTA 463
Query: 513 LKFGAPPHGGFAIGFDRLIMLMTKSHSIRDVIAFP 547
L+ G PP G IG DR++ML T SH+IRDVI FP
Sbjct: 464 LEHGLPPTAGLGIGIDRMVMLFTNSHTIRDVILFP 498
>pdb|1E24|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And Atp And Mn2+
pdb|1E1T|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
T Lysyl_adenylate Intermediate
pdb|1E1O|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal For, Complexed With
L
pdb|1E22|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And The Non-Hydrolysable Atp Analogue Amp-Pcp
pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|C Chain C, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|B Chain B, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
Length = 504
Score = 98.6 bits (244), Expect = 2e-21
Identities = 76/280 (27%), Positives = 141/280 (50%), Gaps = 29/280 (10%)
Query: 18 VKVAGWCNTYRDHGGVVFIDLRDKSGLVQLVCD----PSSKAYEKALEVRSEFVLVAKGK 73
V VAG T R G F+ L+D G +QL P ++ + ++ A+G
Sbjct: 67 VSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGT 126
Query: 74 VRLRGAGLENPKLKTGKIEIVLEELIIENKSATPPIEIGNKHVNEDLRLKYRYLDL-RSP 132
+ K +TG++ I EL + K+ P + + ++++R + RYLDL +
Sbjct: 127 LF---------KTQTGELSIHCTELRLLTKALRPLPDKFHGLQDQEVRYRQRYLDLIAND 177
Query: 133 NSYEIFKLRSEVALITRNTLAQKGFLEIETPILSKTTPEG--ARDYLVPSRVHEGEFFAL 190
S + F +RS++ R + +GF+E+ETP++ + P G AR ++ + + + L
Sbjct: 178 KSRQTFVVRSKILAAIRQFMVARGFMEVETPMM-QVIPGGASARPFITHHNALDLDMY-L 235
Query: 191 PQSPQLFKQLLMVGGMDRYFQIARCFRDEDLRADRQPEFTQIDAEMSFCDENDVMGVVED 250
+P+L+ + L+VGG +R F+I R FR+E + PEFT ++ M++ D +D++ + E
Sbjct: 236 RIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTES 295
Query: 251 LLQEIFKAVGHT-----------ISKPFKRMPYKEAMENY 279
L + + + V T KPF+++ +EA++ Y
Sbjct: 296 LFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKY 335
Score = 60.5 bits (145), Expect = 5e-10
Identities = 35/95 (36%), Positives = 52/95 (53%), Gaps = 4/95 (4%)
Query: 457 DIEEVEAHAYDVVLNGVELGGGSIRIHKEEMQKKVF-EKINIH---EEEAQKKFGFLLEA 512
D+ ++ + G E+G G ++ E Q + F E++N ++EA + A
Sbjct: 404 DVNPEITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTA 463
Query: 513 LKFGAPPHGGFAIGFDRLIMLMTKSHSIRDVIAFP 547
L++G PP G IG DR+IML T SH+IRDVI FP
Sbjct: 464 LEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFP 498
>pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From
Yeast
Length = 487
Score = 86.3 bits (212), Expect = 9e-18
Identities = 80/278 (28%), Positives = 131/278 (46%), Gaps = 34/278 (12%)
Query: 25 NTYRDHGGVVFIDLRDKSGLVQLVCDP------SSKAYEKALEVRSEFVLVAKGKVR--- 75
NT + + F+ LR ++ L+Q + S + A + E +++ +G V+
Sbjct: 47 NTRQQGATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVD 106
Query: 76 --LRGAGLENPKLKTGKIEIVLEE-----LIIEN--KSATPPIEIGNKHVNEDLRLKYRY 126
++ A ++N ++ KI + E +++E+ +S G VN D RL YR
Sbjct: 107 EPIKSATVQNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRV 166
Query: 127 LDLRSPNSYEIFKLRSEVALITRNTLAQKGFLEIETPILSKTTPEGARDYLVPSRVHEGE 186
+DLR+ + IF++++ V + R LA K F E+ TP L EG S V E
Sbjct: 167 IDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGG------SSVFEVT 220
Query: 187 FFA----LPQSPQLFKQLLMVGGMDRYFQIARCFRDEDLRADR-QPEFTQIDAEMSFCDE 241
+F L QSPQ KQ L+V +R ++I FR E+ R EFT +D EM+F +
Sbjct: 221 YFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEH 280
Query: 242 -NDVMGVVEDLLQEIF----KAVGHTISKPFKRMPYKE 274
++V+ + +L IF K H I K+ P +E
Sbjct: 281 YHEVLDTLSELFVFIFSELPKRFAHEIELVRKQYPVEE 318
Score = 45.8 bits (107), Expect = 1e-05
Identities = 43/190 (22%), Positives = 82/190 (42%), Gaps = 32/190 (16%)
Query: 363 GPLVKFLSEKGLKNILERTDAQVGDIVFFGAGDKKIVLDYMGRLRLKVAETLDLIDKDAL 422
G +V+ ++G++ +L ++GD ++K ++G+L + DK
Sbjct: 325 GKMVRLTYKEGIE-MLRAAGKEIGDFEDLSTENEK----FLGKL---------VRDKYDT 370
Query: 423 NFLWVVNFPMFEKTENGYHAAHHPF-TMPKNIECEDIEEVEAHAYDVVLNGVELGGGSIR 481
+F + FP+ + PF TMP + +++YD + G E+ G+ R
Sbjct: 371 DFYILDKFPLEIR----------PFYTMP-----DPANPKYSNSYDFFMRGEEILSGAQR 415
Query: 482 IHKEEMQKKVFEKINIHEEEAQKKFGFLLEALKFGAPPHGGFAIGFDRLIMLMTKSHSIR 541
IH + ++ + + E+ K + +G PPH G IG +R++M +IR
Sbjct: 416 IHDHALLQERMKAHGLSPEDPGLKD--YCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIR 473
Query: 542 DVIAFPKTQK 551
FP+ K
Sbjct: 474 RASLFPRDPK 483
>pdb|1ASZ|A Chain A, Aspartyl Trna Synthetase (Asprs) (E.C.6.1.1.12) Complexed
With Transfer Ribonucleic Acid (Trnaasp) And Atp
pdb|1ASZ|B Chain B, Aspartyl Trna Synthetase (Asprs) (E.C.6.1.1.12) Complexed
With Transfer Ribonucleic Acid (Trnaasp) And Atp
pdb|1ASY|A Chain A, Aspartyl Trna Synthetase (Asprs) (E.C.6.1.1.12) Complexed
With Transfer Ribonucleic Acid (Trnaasp)
pdb|1ASY|B Chain B, Aspartyl Trna Synthetase (Asprs) (E.C.6.1.1.12) Complexed
With Transfer Ribonucleic Acid (Trnaasp)
Length = 490
Score = 86.3 bits (212), Expect = 9e-18
Identities = 80/278 (28%), Positives = 131/278 (46%), Gaps = 34/278 (12%)
Query: 25 NTYRDHGGVVFIDLRDKSGLVQLVCDP------SSKAYEKALEVRSEFVLVAKGKVR--- 75
NT + + F+ LR ++ L+Q + S + A + E +++ +G V+
Sbjct: 50 NTRQQGATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVD 109
Query: 76 --LRGAGLENPKLKTGKIEIVLEE-----LIIEN--KSATPPIEIGNKHVNEDLRLKYRY 126
++ A ++N ++ KI + E +++E+ +S G VN D RL YR
Sbjct: 110 EPIKSATVQNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRV 169
Query: 127 LDLRSPNSYEIFKLRSEVALITRNTLAQKGFLEIETPILSKTTPEGARDYLVPSRVHEGE 186
+DLR+ + IF++++ V + R LA K F E+ TP L EG S V E
Sbjct: 170 IDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGG------SSVFEVT 223
Query: 187 FFA----LPQSPQLFKQLLMVGGMDRYFQIARCFRDEDLRADR-QPEFTQIDAEMSFCDE 241
+F L QSPQ KQ L+V +R ++I FR E+ R EFT +D EM+F +
Sbjct: 224 YFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEH 283
Query: 242 -NDVMGVVEDLLQEIF----KAVGHTISKPFKRMPYKE 274
++V+ + +L IF K H I K+ P +E
Sbjct: 284 YHEVLDTLSELFVFIFSELPKRFAHEIELVRKQYPVEE 321
Score = 45.8 bits (107), Expect = 1e-05
Identities = 43/190 (22%), Positives = 82/190 (42%), Gaps = 32/190 (16%)
Query: 363 GPLVKFLSEKGLKNILERTDAQVGDIVFFGAGDKKIVLDYMGRLRLKVAETLDLIDKDAL 422
G +V+ ++G++ +L ++GD ++K ++G+L + DK
Sbjct: 328 GKMVRLTYKEGIE-MLRAAGKEIGDFEDLSTENEK----FLGKL---------VRDKYDT 373
Query: 423 NFLWVVNFPMFEKTENGYHAAHHPF-TMPKNIECEDIEEVEAHAYDVVLNGVELGGGSIR 481
+F + FP+ + PF TMP + +++YD + G E+ G+ R
Sbjct: 374 DFYILDKFPLEIR----------PFYTMP-----DPANPKYSNSYDFFMRGEEILSGAQR 418
Query: 482 IHKEEMQKKVFEKINIHEEEAQKKFGFLLEALKFGAPPHGGFAIGFDRLIMLMTKSHSIR 541
IH + ++ + + E+ K + +G PPH G IG +R++M +IR
Sbjct: 419 IHDHALLQERMKAHGLSPEDPGLKD--YCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIR 476
Query: 542 DVIAFPKTQK 551
FP+ K
Sbjct: 477 RASLFPRDPK 486
>pdb|1WHO| Allergen Phl P 2
pdb|1WHP| Allergen Phl P 2
pdb|1BMW| A Fibronectin Type Iii Fold In Plant Allergens: The Solution
Structure Of Phl Pii From Timothy Grass Pollen, Nmr, 38
Structures
Length = 96
Score = 29.3 bits (64), Expect = 1.3
Identities = 20/73 (27%), Positives = 38/73 (51%), Gaps = 3/73 (4%)
Query: 310 TAKDPKNKRIKALNVKGADALFSRSVLKE--LEEFVRQFGAKGLAYLQIKEDEIKGPL-V 366
T + N++ A+ VK + L+E +E+V +G + E+ ++GP
Sbjct: 7 TVEKGSNEKHLAVLVKYEGDTMAEVELREHGSDEWVAMTKGEGGVWTFDSEEPLQGPFNF 66
Query: 367 KFLSEKGLKNILE 379
+FL+EKG+KN+ +
Sbjct: 67 RFLTEKGMKNVFD 79
>pdb|1I5D|A Chain A, Structure Of Chea Domain P4 In Complex With Tnp-Atp
Length = 191
Score = 29.3 bits (64), Expect = 1.3
Identities = 44/191 (23%), Positives = 74/191 (38%), Gaps = 39/191 (20%)
Query: 307 FSNTAKDPKNKRIKALN--VKGADALFSRSVLKELEEFVRQFGAKGLAY-LQIKEDEIK- 362
F +D K K +N ++G D R+ ++E+ E + + + ++ KE+ I
Sbjct: 16 FPRMVRDLAKKMNKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAK 75
Query: 363 -----GPLVKFLSEKGLKNILERTDAQVGDIVFFGAGDKKIVLDYMGRLRLKVAETLDLI 417
G L+ +G ++E D G +KI+ + + + ++ L
Sbjct: 76 GKPPIGTLILSARHEGNNVVIEVEDDGRG------IDKEKIIRKAIEKGLIDESKAATLS 129
Query: 418 DKDALNFLWVVNFPMFEKTENGYHAAHHPFTMPKNIECEDIEEVEAH--AYDVVLNGVEL 475
D++ LNFL+V F EK + EV DVV N VE
Sbjct: 130 DQEILNFLFVPGFSTKEK----------------------VSEVSGRGVGMDVVKNVVES 167
Query: 476 GGGSIRIHKEE 486
GSI I E+
Sbjct: 168 LNGSISIESEK 178
>pdb|1I58|A Chain A, Structure Of The Histidine Kinase Chea Atp-Binding Domain
In Complex With Atp Analog Adpcp And Magnesium
pdb|1I59|B Chain B, Structure Of The Histidine Kinase Chea Atp-Binding Domain
In Complex With Adpnp And Magensium
pdb|1I5A|A Chain A, Structure Of Chea Domain P4 In Complex With Adpcp And
Manganese
pdb|1I5B|A Chain A, Structure Of Chea Domain P4 In Complex With Adpnp And
Manganese
pdb|1I5B|B Chain B, Structure Of Chea Domain P4 In Complex With Adpnp And
Manganese
pdb|1I5C|B Chain B, Structure Of Chea Domain P4 In Complex With Adp
pdb|1I5C|A Chain A, Structure Of Chea Domain P4 In Complex With Adp
pdb|1I5A|B Chain B, Structure Of Chea Domain P4 In Complex With Adpcp And
Manganese
pdb|1I59|A Chain A, Structure Of The Histidine Kinase Chea Atp-Binding Domain
In Complex With Adpnp And Magensium
pdb|1I58|B Chain B, Structure Of The Histidine Kinase Chea Atp-Binding Domain
In Complex With Atp Analog Adpcp And Magnesium
Length = 189
Score = 29.3 bits (64), Expect = 1.3
Identities = 44/191 (23%), Positives = 74/191 (38%), Gaps = 39/191 (20%)
Query: 307 FSNTAKDPKNKRIKALN--VKGADALFSRSVLKELEEFVRQFGAKGLAY-LQIKEDEIK- 362
F +D K K +N ++G D R+ ++E+ E + + + ++ KE+ I
Sbjct: 14 FPRMVRDLAKKMNKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAK 73
Query: 363 -----GPLVKFLSEKGLKNILERTDAQVGDIVFFGAGDKKIVLDYMGRLRLKVAETLDLI 417
G L+ +G ++E D G +KI+ + + + ++ L
Sbjct: 74 GKPPIGTLILSARHEGNNVVIEVEDDGRG------IDKEKIIRKAIEKGLIDESKAATLS 127
Query: 418 DKDALNFLWVVNFPMFEKTENGYHAAHHPFTMPKNIECEDIEEVEAH--AYDVVLNGVEL 475
D++ LNFL+V F EK + EV DVV N VE
Sbjct: 128 DQEILNFLFVPGFSTKEK----------------------VSEVSGRGVGMDVVKNVVES 165
Query: 476 GGGSIRIHKEE 486
GSI I E+
Sbjct: 166 LNGSISIESEK 176
>pdb|2PLC| Phosphatidylinositol-Specific Phospholipase C From Listeria
Monocytogenes
Length = 274
Score = 28.5 bits (62), Expect = 2.1
Identities = 47/177 (26%), Positives = 71/177 (39%), Gaps = 27/177 (15%)
Query: 196 LFKQLLMVGGMDRYFQIARCFRDEDLRADRQPEFTQ----IDAEMSFCDENDVMGVVEDL 251
L K L M Y Q+ R D+RA ++A +S GV+E +
Sbjct: 38 LTKPLAQTQTMSLYQQLEAGIRYIDIRAKDNLNIYHGPIFLNASLS--------GVLETI 89
Query: 252 LQEIFKAVGHTISKPFKRMPYKEAMENYGSDKPDLRFELPLIEVGDCFRDSSNAIFSNTA 311
Q + K TI K E +D D R + PLI + ++D ++
Sbjct: 90 TQFLKKNPKETIIMRLKD-------EQNSNDSFDYRIQ-PLINI---YKDY---FYTTPR 135
Query: 312 KDPKNKRIKALNVKGADALFSRSVLKE-LEEFVRQFGAKGLAYLQIKEDEIKGPLVK 367
D NK +V+G L S + K+ L R+FG + A Q+ +D+ GP VK
Sbjct: 136 TDTSNKIPTLKDVRGKILLLSENHTKKPLVINSRKFGMQFGAPNQVIQDDYNGPSVK 192
>pdb|1AOD| Phosphatidylinositol-Specific Phospholipase C From Listeria
Monocytogenes
Length = 289
Score = 28.5 bits (62), Expect = 2.1
Identities = 47/177 (26%), Positives = 71/177 (39%), Gaps = 27/177 (15%)
Query: 196 LFKQLLMVGGMDRYFQIARCFRDEDLRADRQPEFTQ----IDAEMSFCDENDVMGVVEDL 251
L K L M Y Q+ R D+RA ++A +S GV+E +
Sbjct: 52 LTKPLAQTQTMSLYQQLEAGIRYIDIRAKDNLNIYHGPIFLNASLS--------GVLETI 103
Query: 252 LQEIFKAVGHTISKPFKRMPYKEAMENYGSDKPDLRFELPLIEVGDCFRDSSNAIFSNTA 311
Q + K TI K E +D D R + PLI + ++D ++
Sbjct: 104 TQFLKKNPKETIIMRLKD-------EQNSNDSFDYRIQ-PLINI---YKDY---FYTTPR 149
Query: 312 KDPKNKRIKALNVKGADALFSRSVLKE-LEEFVRQFGAKGLAYLQIKEDEIKGPLVK 367
D NK +V+G L S + K+ L R+FG + A Q+ +D+ GP VK
Sbjct: 150 TDTSNKIPTLKDVRGKILLLSENHTKKPLVINSRKFGMQFGAPNQVIQDDYNGPSVK 206
>pdb|1DOT| Mol_id: 1; Molecule: Duck Ovotransferrin; Chain: Null; Synonym:
Dot
pdb|1AOV| Apo Duck Ovotransferrin
Length = 686
Score = 28.5 bits (62), Expect = 2.1
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 14/111 (12%)
Query: 155 KGFLEIETPILSKTTPEGARDYLVPSRVHEG-EFFALPQSPQLFKQLLMVGGMDRYFQIA 213
K L ++ I+ K PE L+ S+++ G E+++ QS L K L VG + Q
Sbjct: 296 KDLLFKDSAIMLKRVPE-----LMDSQLYLGFEYYSAIQS--LRKDQLTVGPRENKIQWC 348
Query: 214 RCFRDEDLRADRQPEFTQIDAEMSFCDENDVMGVVEDLLQEIFKAVGHTIS 264
+DE + DR + + E + D+N +D + +I K IS
Sbjct: 349 AVGKDEKSKCDRWSVVSNGEVECTILDDN------KDCIVKITKGEADAIS 393
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 28.1 bits (61), Expect = 2.8
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 348 AKGLAYLQIKEDEIKGPLVKFLSEKGLKNILER 380
A G Y +ED+ K P+ +F+SE G+ N+ R
Sbjct: 69 ADGFVYNLQQEDDGKTPVERFVSEDGIDNVRGR 101
>pdb|1B3Q|B Chain B, Crystal Structure Of Chea-289, A Signal Transducing
Histidine Kinase
pdb|1B3Q|A Chain A, Crystal Structure Of Chea-289, A Signal Transducing
Histidine Kinase
Length = 379
Score = 27.7 bits (60), Expect = 3.7
Identities = 43/191 (22%), Positives = 74/191 (38%), Gaps = 39/191 (20%)
Query: 307 FSNTAKDPKNKRIKALN--VKGADALFSRSVLKELEEFVRQFGAKGLAY-LQIKEDEIK- 362
F +D K K +N ++G D R+ ++E+ E + + + ++ KE+ I
Sbjct: 73 FPRMVRDLAKKMNKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAK 132
Query: 363 -----GPLVKFLSEKGLKNILERTDAQVGDIVFFGAGDKKIVLDYMGRLRLKVAETLDLI 417
G L+ +G ++E D G +KI+ + + + ++ L
Sbjct: 133 GKPPIGTLILSARHEGNNVVIEVEDDGRG------IDKEKIIRKAIEKGLIDESKAATLS 186
Query: 418 DKDALNFLWVVNFPMFEKTENGYHAAHHPFTMPKNIECEDIEEVEAH--AYDVVLNGVEL 475
D++ LNFL+V F EK + EV DVV N VE
Sbjct: 187 DQEILNFLFVPGFSTKEK----------------------VSEVSGRGVGMDVVKNVVES 224
Query: 476 GGGSIRIHKEE 486
GS+ I E+
Sbjct: 225 LNGSMGIESEK 235
>pdb|1ICP|A Chain A, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato Complexed With Peg400
pdb|1ICP|B Chain B, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato Complexed With Peg400
pdb|1ICQ|A Chain A, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato Complexed With 9r,13r-Opda
pdb|1ICS|A Chain A, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato
pdb|1ICS|B Chain B, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato
pdb|1ICQ|B Chain B, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato Complexed With 9r,13r-Opda
Length = 376
Score = 27.3 bits (59), Expect = 4.8
Identities = 21/96 (21%), Positives = 41/96 (41%), Gaps = 9/96 (9%)
Query: 438 NGYHAAHHPFTMPKNIECEDIEEVEAHAYDVVLNGVELGGGSIRIH-------KEEMQKK 490
NG AH FT P+ + ++I ++ N +E G + IH + M+ +
Sbjct: 144 NGIDIAH--FTRPRRLTTDEIPQIVNEFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQ 201
Query: 491 VFEKINIHEEEAQKKFGFLLEALKFGAPPHGGFAIG 526
V ++ + + + + F LE ++ A G +G
Sbjct: 202 VNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVG 237
>pdb|1IU8|A Chain A, The X-Ray Crystal Structure Of Pyrrolidone-Carboxylate
Peptidase From Hyperthermophilic Archaeon Pyrococcus
Horikoshii
pdb|1IU8|B Chain B, The X-Ray Crystal Structure Of Pyrrolidone-Carboxylate
Peptidase From Hyperthermophilic Archaeon Pyrococcus
Horikoshii
Length = 206
Score = 26.9 bits (58), Expect = 6.2
Identities = 17/53 (32%), Positives = 26/53 (48%), Gaps = 1/53 (1%)
Query: 240 DENDVMGVVEDLLQEIFKAVGHTISKPFKRMPYKEAMENYGSDKPDLRFELPL 292
D+N M +VE L + I + VG + FKR K ++ +PD+ L L
Sbjct: 15 DKNPTMDIVEALSERIPEVVGEILPVSFKRAREK-LLKVLDDVRPDITINLGL 66
>pdb|1KRS| Mol_id: 1; Molecule: Lysyl-Trna Synthetase (Product Of Lyss Gene);
Chain: Null; Domain: Anticodon-Binding Domain (Residues
40 - 149); Ec: 6.1.1.6; Engineered: Yes
pdb|1KRT| Mol_id: 1; Molecule: Lysyl-Trna Synthetase (Product Of Lyss Gene);
Chain: Null; Domain: Anticodon-Binding Domain (Residues
40 - 149); Ec: 6.1.1.6; Engineered: Yes
Length = 120
Score = 26.6 bits (57), Expect = 8.2
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 13/91 (14%)
Query: 18 VKVAGWCNTYRDHGGVVFIDLRDKSGLVQLVCD----PSSKAYEKALEVRSEFVLVAKGK 73
V VAG T R G F+ L+D G +QL P E+ + +L AKGK
Sbjct: 39 VAVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDDLPEGVYNEQFKKWDLGDILGAKGK 98
Query: 74 VRLRGAGLENPKLKTGKIEIVLEELIIENKS 104
+ K KTG++ I EL + K+
Sbjct: 99 LF---------KTKTGELSIHCTELRLLTKA 120
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.139 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,338,130
Number of Sequences: 13198
Number of extensions: 143248
Number of successful extensions: 467
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 420
Number of HSP's gapped (non-prelim): 25
length of query: 577
length of database: 2,899,336
effective HSP length: 93
effective length of query: 484
effective length of database: 1,671,922
effective search space: 809210248
effective search space used: 809210248
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)