BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645243|ref|NP_207413.1| adenylate kinase (adk)
[Helicobacter pylori 26695]
(191 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3ADK| Adenylate Kinase (E.C.2.7.4.3) 96 2e-21
pdb|1ZIN| Adenylate Kinase With Bound Ap5a >gi|2392649|pd... 89 3e-19
pdb|1UKZ| Uridylate Kinase (E.C.2.7.4.-) Complexed With A... 84 1e-17
pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex ... 79 4e-16
pdb|1AK2| Adenylate Kinase Isoenzyme-2 >gi|1633467|pdb|2A... 78 6e-16
pdb|2AK3|A Chain A, Adenylate Kinase Isoenzyme-3 (Gtp: Amp ... 76 3e-15
pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Num... 75 6e-15
pdb|3AKY| Atp:amp Phosphotransferase, Myokinase Mol_id: 1... 74 1e-14
pdb|1AKY| Atp:amp Phosphotransferase, Myokinase Mol_id: 1... 74 1e-14
pdb|1DVR|A Chain A, Nucleoside Monophosphate Kinase, Myokin... 70 1e-13
pdb|1AKE|A Chain A, Adenylate Kinase (E.C.2.7.4.3) Complex ... 62 6e-11
pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E.... 58 6e-10
pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. ... 54 9e-09
pdb|1LY1|A Chain A, Structure And Mechanism Of T4 Polynucle... 32 0.036
pdb|1LTQ|A Chain A, Crystal Structure Of T4 Polynucleotide ... 30 0.14
pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant 29 0.40
pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophil... 28 0.52
pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a 28 0.67
pdb|1EFT| Elongation Factor Tu (Ef-Tu) Complexed With Gua... 28 0.67
pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v 28 0.67
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus... 28 0.67
pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junct... 28 0.67
pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant 28 0.67
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermo... 27 1.2
pdb|1KNR|A Chain A, L-Aspartate Oxidase: R386l Mutant >gi|2... 27 1.5
pdb|1CHU|A Chain A, Structure Of L-Aspartate Oxidase: Impli... 27 1.5
pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant 27 1.5
pdb|1MPB| Maltodextrin-Binding Protein (Maltose-Binding P... 27 2.0
pdb|1A7L|A Chain A, Dominant B-Cell Epitope From The Pres2 ... 27 2.0
pdb|1JVX|A Chain A, Maltodextrin-Binding Protein Variant D2... 27 2.0
pdb|1EZO|A Chain A, Global Fold Of Maltodextrin Binding Pro... 27 2.0
pdb|1MH3|A Chain A, Maltose Binding-A1 Homeodomain Protein ... 27 2.0
pdb|1FQA|A Chain A, Structure Of Maltotetraitol Bound To Op... 27 2.0
pdb|1LLS|A Chain A, Crystal Structure Of Unliganded Maltose... 27 2.0
pdb|1MDQ| Maltodextrin-Binding Protein (Male322) (Maltose... 27 2.0
pdb|1HSJ|A Chain A, Sarr Mbp Fusion Structure >gi|14488507|... 27 2.0
pdb|1JVY|A Chain A, Maltodextrin-Binding Protein Variant D2... 27 2.0
pdb|1MG1|A Chain A, Htlv-1 Gp21 EctodomainMALTOSE-Binding P... 27 2.0
pdb|1GVF|A Chain A, Structure Of Tagatose-1,6-Bisphosphate ... 26 2.6
pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRN... 26 3.3
pdb|1G29|1 Chain 1, Malk >gi|12084695|pdb|1G29|2 Chain 2, Malk 26 3.3
pdb|1HDO|A Chain A, Human Biliverdin Ix Beta Reductase: Nad... 26 3.3
pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh... 25 5.7
pdb|2NG1| N And Gtpase Domains Of The Signal Sequence Rec... 25 5.7
pdb|1FFH| N And Gtpase Domains Of The Signal Sequence Rec... 25 5.7
pdb|1JPN|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain ... 25 5.7
pdb|1NG1| N And Gtpase Domains Of The Signal Sequence Rec... 25 5.7
pdb|1IXR|C Chain C, Ruva-Ruvb Complex 25 7.5
pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of ... 25 7.5
pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc T... 25 7.5
pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva D... 25 7.5
pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermoph... 25 7.5
pdb|1RCF| Flavodoxin Complexed With Flavin Mononucleotide... 24 9.7
pdb|1BF6|B Chain B, Phosphotriesterase Homology Protein Fro... 24 9.7
pdb|1DX9|A Chain A, W57a Apoflavodoxin From Anabaena >gi|77... 24 9.7
pdb|1FTG| Structure Of Apoflavodoxin: Closure Of A Tyrosi... 24 9.7
pdb|1L4U|A Chain A, Crystal Structure Of Shikimate Kinase F... 24 9.7
>pdb|3ADK| Adenylate Kinase (E.C.2.7.4.3)
Length = 195
Score = 96.3 bits (238), Expect = 2e-21
Identities = 56/186 (30%), Positives = 101/186 (54%), Gaps = 14/186 (7%)
Query: 3 QLFLIIGAPGSGKTTDAELIAKNNSETIAHFSTGDLLRAESAKKTERGLLIEKFTSQGEL 62
++ ++G PGSGK T E I + T H STGDLLRAE + + RG ++ + +G+L
Sbjct: 10 KIIFVVGGPGSGKGTQCEKIVQKYGYT--HLSTGDLLRAEVSSGSARGKMLSEIMEKGQL 67
Query: 63 VPLEIVVETILSAIKS---SGKGIILIDGYPRSVEQMQALDKELNAQNEVILKSVIEVEV 119
VPLE V++ + A+ + + KG LIDGYPR V+Q + ++++ ++ V+
Sbjct: 68 VPLETVLDMLRDAMVAKVDTSKG-FLIDGYPREVKQGEEFERKIGQPT-----LLLYVDA 121
Query: 120 SENTAKERVLGR---SRGADDNEKVFHNRMRVFLDPLGEIQNFYKNKKVYKAIDGERSIE 176
T +R+L R S DDNE+ R+ + + FY+ + + + ++ E S++
Sbjct: 122 GPETMTKRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVD 181
Query: 177 EIVGEM 182
++ ++
Sbjct: 182 DVFSQV 187
>pdb|1ZIN| Adenylate Kinase With Bound Ap5a
pdb|1ZIP| Bacillus Stearothermophilus Adenylate Kinase
pdb|1ZIO| Phosphotransferase
Length = 217
Score = 89.0 bits (219), Expect = 3e-19
Identities = 61/212 (28%), Positives = 105/212 (48%), Gaps = 34/212 (16%)
Query: 6 LIIGAPGSGKTTDAELIAKNNSETIAHFSTGDLLRAESAKKTERGLLIEKFTSQGELVPL 65
+++G PG+GK T AE I + I H STGD+ RA + T GL +++ +G+LVP
Sbjct: 4 VLMGLPGAGKGTQAEKIVA--AYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPD 61
Query: 66 EIVVETILSAI-KSSGKGIILIDGYPRSVEQMQALDKELNAQNEVILKSVIEVEVSENTA 124
E+ + + + K + L+DG+PR+V Q +AL+ L A L VI ++V ++
Sbjct: 62 EVTIGIVRERLSKDDCQNGFLLDGFPRTVAQAEALETML-ADIGRKLDYVIHIDVRQDVL 120
Query: 125 KERVLGRS------------------------------RGADDNEKVFHNRMRVFLDPLG 154
ER+ GR + ADDNE NR+ V + +
Sbjct: 121 MERLTGRRICRNCGATYHLIFHPPAKPGVCDKCGGELYQRADDNEATVANRLEVNMKQMK 180
Query: 155 EIQNFYKNKKVYKAIDGERSIEEIVGEMQEYI 186
+ +FY+ K + I+GE+ +E++ +++E +
Sbjct: 181 PLVDFYEQKGYLRNINGEQDMEKVFADIRELL 212
>pdb|1UKZ| Uridylate Kinase (E.C.2.7.4.-) Complexed With Adp And Amp
pdb|1UKY| Uridylate Kinase (E.C.2.7.4.-) Complexed With Two Adp Molecules
Length = 203
Score = 84.0 bits (206), Expect = 1e-17
Identities = 54/190 (28%), Positives = 100/190 (52%), Gaps = 14/190 (7%)
Query: 4 LFLIIGAPGSGKTTDAELIAKNNSETIAHFSTGDLLRAESAKK-TERGLLIEKFTSQGEL 62
+ ++G PG+GK T E + K+ S H S GDLLRAE + ++ G LI+ +G++
Sbjct: 17 VIFVLGGPGAGKGTQCEKLVKDYS--FVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQI 74
Query: 63 VPLEIVVETILSAIKSS---GKGIILIDGYPRSVEQMQALDKELNAQNEVILKSVIEVEV 119
VP EI + + +AI + K LIDG+PR ++Q + ++++ V K ++ +
Sbjct: 75 VPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDI-----VESKFILFFDC 129
Query: 120 SENTAKERVLGRSRGA---DDNEKVFHNRMRVFLDPLGEIQNFYKNKKVYKAIDGERSIE 176
E+ ER+L R + + DDN + R F + + +++ K + +RS+E
Sbjct: 130 PEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVE 189
Query: 177 EIVGEMQEYI 186
++ ++Q+ I
Sbjct: 190 DVYKDVQDAI 199
>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
pdb|1ZAK|B Chain B, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
Length = 222
Score = 78.6 bits (192), Expect = 4e-16
Identities = 58/204 (28%), Positives = 100/204 (48%), Gaps = 27/204 (13%)
Query: 6 LIIGAPGSGKTTDAELIAKNNSETIAHFSTGDLLRAESAKKTERGLLIEKFTSQGELVPL 65
+I GAP SGK T ELI +AH S GDLLRAE A +E G ++F +G+LVP
Sbjct: 9 MISGAPASGKGTQCELI--KTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPD 66
Query: 66 EIVVETILSAIK--SSGKGIILIDGYPRSVEQMQALDK---------ELNAQNEVILKSV 114
EIVV + ++ + + L+DGYPRS Q AL+ L+ +E++++ V
Sbjct: 67 EIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERV 126
Query: 115 IEVEVSENTAK-----------ERVLGR-SRGADDNEKVFHNRMRVFLDPLGEIQNFYKN 162
+ + T K E + R ++ DD E+ R+ + + + + Y+N
Sbjct: 127 VGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDTEEKVKLRLETYYQNIESLLSTYEN 186
Query: 163 KKVYKAIDGERSIEEIVGEMQEYI 186
+ + G+ +++ + ++ E +
Sbjct: 187 --IIVKVQGDATVDAVFAKIDELL 208
>pdb|1AK2| Adenylate Kinase Isoenzyme-2
pdb|2AK2| Adenylate Kinase Isoenzyme-2
Length = 233
Score = 78.2 bits (191), Expect = 6e-16
Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 34/200 (17%)
Query: 6 LIIGAPGSGKTTDAELIAKNNSETIAHFSTGDLLRAESAKKTERGLLIEKFTSQGELVPL 65
+++G PG+GK T A +AKN + H +TGD+LRA A +E G ++ G+LV
Sbjct: 20 VLLGPPGAGKGTQAPKLAKNFC--VCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSD 77
Query: 66 EIVVETILSAIKSSG-KGIILIDGYPRSVEQMQALDKELNAQNEVILKSVIEVEVSENTA 124
E+V+E I +++ K L+DG+PR+V Q + LD + + E L SVIE + ++
Sbjct: 78 EMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEK-LDSVIEFSIPDSLL 136
Query: 125 KERVLGRS------------------------------RGADDNEKVFHNRMRVFLDPLG 154
R+ GR R +DDN+K R+ +
Sbjct: 137 IRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTT 196
Query: 155 EIQNFYKNKKVYKAIDGERS 174
+ +Y + ++ AID ++
Sbjct: 197 PLVEYYSKRGIHSAIDASQT 216
>pdb|2AK3|A Chain A, Adenylate Kinase Isoenzyme-3 (Gtp: Amp Phosphotransferase)
(E.C.2.7.4.10)
pdb|2AK3|B Chain B, Adenylate Kinase Isoenzyme-3 (Gtp: Amp Phosphotransferase)
(E.C.2.7.4.10)
Length = 226
Score = 75.9 bits (185), Expect = 3e-15
Identities = 44/125 (35%), Positives = 72/125 (57%), Gaps = 8/125 (6%)
Query: 7 IIGAPGSGKTTDAELIAKNNSETIAHFSTGDLLRAESAKKTERGLLIEKFTSQGELVPLE 66
I+GAPGSGK T + I K+ + H S+GDLLR + TE G+L + F QG+L+P +
Sbjct: 11 IMGAPGSGKGTVSSRITKHFE--LKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDD 68
Query: 67 IVVETILSAIKSSGKGIILIDGYPRSVEQMQALDKELNAQNEVILKSVIEVEVSENTAKE 126
++ +L +K+ + L+DG+PR++ Q +ALD+ + +VI + V K+
Sbjct: 69 VMTRLVLHELKNLTQYNWLLDGFPRTLPQAEALDRAYQ------IDTVINLNVPFEVIKQ 122
Query: 127 RVLGR 131
R+ R
Sbjct: 123 RLTAR 127
>pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog In UmpCMP
Kinase
pdb|5UKD|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog
pdb|1UKE| UmpCMP KINASE FROM SLIME MOLD
pdb|3UKD| UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP, And Alf3
pdb|4UKD| UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, UDP, Beryllium
Fluoride
pdb|2UKD| UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP
Length = 194
Score = 74.7 bits (182), Expect = 6e-15
Identities = 53/187 (28%), Positives = 88/187 (46%), Gaps = 7/187 (3%)
Query: 7 IIGAPGSGKTTDAELIAKNNSETIAHFSTGDLLRAESAKKTERGLLIEKFTSQGELVPLE 66
++G PGSGK T I ++ H S GDLLR E ++ G +I GE+VP
Sbjct: 11 VLGGPGSGKGTQCANIVRDFGWV--HLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSI 68
Query: 67 IVVETILSAIKSSGKGIILIDGYPRSVEQMQALDKELNAQNEVILKSVIEVEVSENTAKE 126
+ V+ + +AI ++ L+DG+PR+ E + ++ N ++ V K V+ + E +
Sbjct: 69 VTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEE--NMKDFVDTKFVLFFDCPEEVMTQ 126
Query: 127 RVL--GRSRG-ADDNEKVFHNRMRVFLDPLGEIQNFYKNKKVYKAIDGERSIEEIVGEMQ 183
R+L G S G +DDN + R F + + Y K I R + E+ +++
Sbjct: 127 RLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVE 186
Query: 184 EYILSFG 190
S G
Sbjct: 187 NLFKSMG 193
>pdb|3AKY| Atp:amp Phosphotransferase, Myokinase Mol_id: 1; Molecule:
Adenylate Kinase; Chain: Null; Synonym: Atp:amp
Phosphotransferase, Myokinase; Ec: 2.7.4.3; Engineered:
Yes; Mutation: I213f; Heterogen: Ap5a; Heterogen:
Imidazole
Length = 221
Score = 73.9 bits (180), Expect = 1e-14
Identities = 54/200 (27%), Positives = 91/200 (45%), Gaps = 35/200 (17%)
Query: 6 LIIGAPGSGKTTDAELIAKNNSETIAHFSTGDLLRAESAKKTERGLLIEKFTSQGELVPL 65
++IG PG+GK T A + + AH +TGD+LR++ AK T+ GL +K QG LV
Sbjct: 9 VLIGPPGAGKGTQAPNLQERFHA--AHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSD 66
Query: 66 EIVVETILSAIKSSG--KGIILIDGYPRSVEQMQALDKELNAQNEVILKSVIEVEVSENT 123
+I+V I + ++ K ++DG+PR++ Q + LD+ L Q L+ IE++V +
Sbjct: 67 DIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQG-TPLEKAIELKVDDEL 125
Query: 124 AKERVLGR------------------------------SRGADDNEKVFHNRMRVFLDPL 153
R+ GR + +DDN R+ +
Sbjct: 126 LVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQT 185
Query: 154 GEIQNFYKNKKVYKAIDGER 173
I +FYK ++ +D +
Sbjct: 186 EPIVDFYKKTGIWAGVDASQ 205
>pdb|1AKY| Atp:amp Phosphotransferase, Myokinase Mol_id: 1; Molecule:
Adenylate Kinase; Chain: Null; Synonym: Atp:amp
Phosphotransferase, Myokinase; Ec: 2.7.4.3; Heterogen:
Ap5a; Heterogen: Imidazole
pdb|2AKY| Atp:amp Phosphotransferase, Myokinase Mol_id: 1; Molecule:
Adenylate Kinase; Chain: Null; Synonym: Atp:amp
Phosphotransferase, Myokinase; Ec: 2.7.4.3; Heterogen:
Ap5a; Heterogen: Mg
Length = 221
Score = 73.9 bits (180), Expect = 1e-14
Identities = 54/200 (27%), Positives = 91/200 (45%), Gaps = 35/200 (17%)
Query: 6 LIIGAPGSGKTTDAELIAKNNSETIAHFSTGDLLRAESAKKTERGLLIEKFTSQGELVPL 65
++IG PG+GK T A + + AH +TGD+LR++ AK T+ GL +K QG LV
Sbjct: 9 VLIGPPGAGKGTQAPNLQERFHA--AHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSD 66
Query: 66 EIVVETILSAIKSSG--KGIILIDGYPRSVEQMQALDKELNAQNEVILKSVIEVEVSENT 123
+I+V I + ++ K ++DG+PR++ Q + LD+ L Q L+ IE++V +
Sbjct: 67 DIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQG-TPLEKAIELKVDDEL 125
Query: 124 AKERVLGR------------------------------SRGADDNEKVFHNRMRVFLDPL 153
R+ GR + +DDN R+ +
Sbjct: 126 LVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQT 185
Query: 154 GEIQNFYKNKKVYKAIDGER 173
I +FYK ++ +D +
Sbjct: 186 EPIVDFYKKTGIWAGVDASQ 205
>pdb|1DVR|A Chain A, Nucleoside Monophosphate Kinase, Myokinase Mol_id: 1;
Molecule: Adenylate Kinase; Chain: A, B; Synonym:
Atp:amp-Phosphotransferase, Myokinase; Ec: 2.7.4.3;
Engineered: Yes; Mutation: D89v, R165i
pdb|1DVR|B Chain B, Nucleoside Monophosphate Kinase, Myokinase Mol_id: 1;
Molecule: Adenylate Kinase; Chain: A, B; Synonym:
Atp:amp-Phosphotransferase, Myokinase; Ec: 2.7.4.3;
Engineered: Yes; Mutation: D89v, R165i
Length = 220
Score = 70.5 bits (171), Expect = 1e-13
Identities = 55/201 (27%), Positives = 91/201 (44%), Gaps = 37/201 (18%)
Query: 6 LIIGAPGSGKTTDAELIAKNNSETIAHFSTGDLLRAESAKKTERGLLIEKFTSQGELVPL 65
++IG PG+GK T A + + AH +TGD+LR++ AK T+ GL +K QG LV
Sbjct: 8 VLIGPPGAGKGTQAPNLQERFHA--AHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSD 65
Query: 66 EIVVETILSAIKSS---GKGIILIDGYPRSVEQMQALDKELNAQNEVILKSVIEVEVSEN 122
+I+V I + ++ G IL+ G+PR++ Q + LD+ L Q L+ IE++V +
Sbjct: 66 DIMVNMIKDELTNNPACKNGFILV-GFPRTIPQAEKLDQMLKEQG-TPLEKAIELKVDDE 123
Query: 123 TAKERVLGR------------------------------SRGADDNEKVFHNRMRVFLDP 152
R+ GR + +DDN R+ +
Sbjct: 124 LLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQISDDNADALKKRLAAYHAQ 183
Query: 153 LGEIQNFYKNKKVYKAIDGER 173
I +FYK ++ +D +
Sbjct: 184 TEPIVDFYKKTGIWAGVDASQ 204
>pdb|1AKE|A Chain A, Adenylate Kinase (E.C.2.7.4.3) Complex With The Inhibitor
Ap5a
pdb|1AKE|B Chain B, Adenylate Kinase (E.C.2.7.4.3) Complex With The Inhibitor
Ap5a
pdb|1ANK|A Chain A, Adenylate Kinase (Adk) (E.C.2.7.4.3)
pdb|1ANK|B Chain B, Adenylate Kinase (Adk) (E.C.2.7.4.3)
pdb|4AKE|A Chain A, Adenylate Kinase
pdb|4AKE|B Chain B, Adenylate Kinase
pdb|2ECK|A Chain A, Structure Of Phosphotransferase
pdb|2ECK|B Chain B, Structure Of Phosphotransferase
Length = 214
Score = 61.6 bits (148), Expect = 6e-11
Identities = 43/139 (30%), Positives = 73/139 (51%), Gaps = 9/139 (6%)
Query: 6 LIIGAPGSGKTTDAELIAKNNSETIAHFSTGDLLRAESAKKTERGLLIEKFTSQGELVPL 65
+++GAPG+GK T A+ I + I STGD+LRA +E G + G+LV
Sbjct: 4 ILLGAPGAGKGTQAQFIMEKYG--IPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTD 61
Query: 66 EIVVETILSAI-KSSGKGIILIDGYPRSVEQMQALDKELNAQNEVILKSVIEVEVSENTA 124
E+V+ + I + + L+DG+PR++ Q A+ KE + + V+E +V +
Sbjct: 62 ELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAM-KEAG----INVDYVLEFDVPDELI 116
Query: 125 KERVLGRSRGADDNEKVFH 143
+R++GR A +V+H
Sbjct: 117 VDRIVGRRVHAPSG-RVYH 134
>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4V|B Chain B, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 58.2 bits (139), Expect = 6e-10
Identities = 42/139 (30%), Positives = 72/139 (51%), Gaps = 9/139 (6%)
Query: 6 LIIGAPGSGKTTDAELIAKNNSETIAHFSTGDLLRAESAKKTERGLLIEKFTSQGELVPL 65
+++GAP +GK T A+ I + I STGD+LRA +E G + G+LV
Sbjct: 4 ILLGAPVAGKGTQAQFIMEKYG--IPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTD 61
Query: 66 EIVVETILSAI-KSSGKGIILIDGYPRSVEQMQALDKELNAQNEVILKSVIEVEVSENTA 124
E+V+ + I + + L+DG+PR++ Q A+ KE + + V+E +V +
Sbjct: 62 ELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAM-KEAG----INVDYVLEFDVPDELI 116
Query: 125 KERVLGRSRGADDNEKVFH 143
+R++GR A +V+H
Sbjct: 117 VDRIVGRRVHAPSG-RVYH 134
>pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4Y|B Chain B, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 54.3 bits (129), Expect = 9e-09
Identities = 41/139 (29%), Positives = 71/139 (50%), Gaps = 9/139 (6%)
Query: 6 LIIGAPGSGKTTDAELIAKNNSETIAHFSTGDLLRAESAKKTERGLLIEKFTSQGELVPL 65
+++GA +GK T A+ I + I STGD+LRA +E G + G+LV
Sbjct: 4 ILLGALVAGKGTQAQFIMEKYG--IPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTD 61
Query: 66 EIVVETILSAI-KSSGKGIILIDGYPRSVEQMQALDKELNAQNEVILKSVIEVEVSENTA 124
E+V+ + I + + L+DG+PR++ Q A+ KE + + V+E +V +
Sbjct: 62 ELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAM-KEAG----INVDYVLEFDVPDELI 116
Query: 125 KERVLGRSRGADDNEKVFH 143
+R++GR A +V+H
Sbjct: 117 VDRIVGRRVHAPSG-RVYH 134
>pdb|1LY1|A Chain A, Structure And Mechanism Of T4 Polynucleotide Kinase
Length = 181
Score = 32.3 bits (72), Expect = 0.036
Identities = 17/26 (65%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 1 MKQLFLIIGAPGSGKTTDA-ELIAKN 25
MK++ L IG PGSGK+T A E IAKN
Sbjct: 1 MKKIILTIGCPGSGKSTWAREFIAKN 26
>pdb|1LTQ|A Chain A, Crystal Structure Of T4 Polynucleotide Kinase
Length = 301
Score = 30.4 bits (67), Expect = 0.14
Identities = 16/25 (64%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Query: 2 KQLFLIIGAPGSGKTTDA-ELIAKN 25
K++ L IG PGSGK+T A E IAKN
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKN 26
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 28.9 bits (63), Expect = 0.40
Identities = 48/167 (28%), Positives = 71/167 (41%), Gaps = 45/167 (26%)
Query: 6 LIIGAPGSGKTTDAELIAKNNSETIAHFSTGDLL-----RAESAKKTERG--LLIEKFTS 58
L+ G PG GKTT A +IA + +T H ++G +L A ERG L I++
Sbjct: 55 LLAGPPGLGKTTLAHIIA-SELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHR 113
Query: 59 QGELVPLEIVVETILSAIKS------SGKG----IILIDGYP----RSVEQMQALDKELN 104
+ V E + SAI+ GKG I ID P S + L L
Sbjct: 114 LNKAVE-----ELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGSTTRSGLLSSPLR 168
Query: 105 AQNEVILK-----------------SVIEVEVSENTAKERVLGRSRG 134
++ +IL+ S+++VE+ E+ A E + RSRG
Sbjct: 169 SRFGIILELDFYTVKELKEIIKRAASLMDVEI-EDAAAEMIAKRSRG 214
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
Length = 405
Score = 28.5 bits (62), Expect = 0.52
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 7 IIG-APGSGKT--TDAELIAKNNSETIAHFSTGDLLRAESAKKTERGLLIEK 55
I+G AP + KT T E+ K E IA + G LLR S ++ ERG ++ K
Sbjct: 255 IVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAK 306
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 28.1 bits (61), Expect = 0.67
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 6 LIIGAPGSGKTTDAELIAKNNSETIAHFSTGDLL 39
L+ G PG GKTT A +IA + +T H ++G +L
Sbjct: 55 LLAGPPGLGKTTLAHIIA-SELQTNIHVTSGPVL 87
>pdb|1EFT| Elongation Factor Tu (Ef-Tu) Complexed With
Guanosine-5'-(Beta,Gamma-Imido) Triphosphate (Gdpnp)
Length = 405
Score = 28.1 bits (61), Expect = 0.67
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 7 IIG-APGSGKT--TDAELIAKNNSETIAHFSTGDLLRAESAKKTERGLLIEK 55
I+G AP + KT T E+ K E IA + G LLR S ++ ERG ++ K
Sbjct: 255 IVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAK 306
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 28.1 bits (61), Expect = 0.67
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 6 LIIGAPGSGKTTDAELIAKNNSETIAHFSTGDLL 39
L+ G PG GKTT A +IA + +T H ++G +L
Sbjct: 55 LLAGPPGLGKTTLAHIIA-SELQTNIHVTSGPVL 87
>pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
Length = 405
Score = 28.1 bits (61), Expect = 0.67
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 7 IIG-APGSGKT--TDAELIAKNNSETIAHFSTGDLLRAESAKKTERGLLIEK 55
I+G AP + KT T E+ K E IA + G LLR S ++ ERG ++ K
Sbjct: 255 IVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAK 306
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 28.1 bits (61), Expect = 0.67
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 6 LIIGAPGSGKTTDAELIAKNNSETIAHFSTGDLL 39
L+ G PG GKTT A +IA + +T H ++G +L
Sbjct: 55 LLAGPPGLGKTTLAHIIA-SELQTNIHVTSGPVL 87
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 28.1 bits (61), Expect = 0.67
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 6 LIIGAPGSGKTTDAELIAKNNSETIAHFSTGDLL 39
L+ G PG GKTT A +IA + +T H ++G +L
Sbjct: 55 LLAGPPGLGKTTLAHIIA-SELQTNIHVTSGPVL 87
>pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 27.3 bits (59), Expect = 1.2
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 7 IIG-APGSGKT--TDAELIAKNNSETIAHFSTGDLLRAESAKKTERGLLIEK 55
I+G AP + +T T E+ K E IA + G LLR S ++ ERG ++ K
Sbjct: 255 IVGLAPETRRTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAK 306
>pdb|1KNR|A Chain A, L-Aspartate Oxidase: R386l Mutant
pdb|1KNP|A Chain A, E. Coli L-Aspartate Oxidase: Mutant R386l In Complex With
Succinate
Length = 540
Score = 26.9 bits (58), Expect = 1.5
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 32 HFSTGDLLRAESA--KKTERGLLIEKFTSQGELVPLEIVVETILSAIKSSGKGIILID 87
+F + LR E A K+ + + F +GEL P +IV I +K G + +D
Sbjct: 255 NFLLTEALRGEGAYLKRPDGTRFMPDFDERGELAPRDIVARAIDHEMKRLGADCMFLD 312
>pdb|1CHU|A Chain A, Structure Of L-Aspartate Oxidase: Implications For The
Succinate Dehydrogenase FUMARATE REDUCATSE FAMILY
Length = 540
Score = 26.9 bits (58), Expect = 1.5
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 32 HFSTGDLLRAESA--KKTERGLLIEKFTSQGELVPLEIVVETILSAIKSSGKGIILID 87
+F + LR E A K+ + + F +GEL P +IV I +K G + +D
Sbjct: 255 NFLLTEALRGEGAYLKRPDGTRFMPDFDERGELAPRDIVARAIDHEMKRLGADCMFLD 312
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 26.9 bits (58), Expect = 1.5
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 6 LIIGAPGSGKTTDAELIAKNNSETIAHFSTGDLL 39
L+ G PG G+TT A +IA + +T H ++G +L
Sbjct: 55 LLAGPPGLGRTTLAHIIA-SELQTNIHVTSGPVL 87
>pdb|1MPB| Maltodextrin-Binding Protein (Maltose-Binding Protein) Mutant,
With Arginine Replacing Tryptophan At Position 230
(Trp-230-Arg)
pdb|1MPD| Maltodextrin-Binding Protein (Maltose-Binding Protein) Mutant,
With Arginine Replacing Tryptophan At Position 230
(Trp-230-Arg), Complexed With Maltose
pdb|1MPC| Maltodextrin-Binding Protein (Maltose-Binding Protein) Mutant,
With Arginine Replacing Tryptophan At Position 230
(Trp-230-Arg)
Length = 370
Score = 26.6 bits (57), Expect = 2.0
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 60 GELVPLEIVVETILSAIKSSGKGIILIDGYPRSVEQMQALDKELNAQNEVIL 111
G+L+ I VE LS I + L+ P++ E++ ALDKEL A+ + L
Sbjct: 101 GKLIAYPIAVEA-LSLIYNKD----LLPNPPKTWEEIPALDKELKAKGKSAL 147
>pdb|1A7L|A Chain A, Dominant B-Cell Epitope From The Pres2 Region Of Hepatitis
B Virus In The Form Of An Inserted Peptide Segment In
Maltodextrin-Binding Protein
pdb|1A7L|B Chain B, Dominant B-Cell Epitope From The Pres2 Region Of Hepatitis
B Virus In The Form Of An Inserted Peptide Segment In
Maltodextrin-Binding Protein
pdb|1A7L|C Chain C, Dominant B-Cell Epitope From The Pres2 Region Of Hepatitis
B Virus In The Form Of An Inserted Peptide Segment In
Maltodextrin-Binding Protein
Length = 389
Score = 26.6 bits (57), Expect = 2.0
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 60 GELVPLEIVVETILSAIKSSGKGIILIDGYPRSVEQMQALDKELNAQNEVIL 111
G+L+ I VE LS I + L+ P++ E++ ALDKEL A+ + L
Sbjct: 101 GKLIAYPIAVEA-LSLIYNKD----LLPNPPKTWEEIPALDKELKAKGKSAL 147
>pdb|1JVX|A Chain A, Maltodextrin-Binding Protein Variant D207cA301GSP316C
Cross-Linked In Crystal
Length = 372
Score = 26.6 bits (57), Expect = 2.0
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 60 GELVPLEIVVETILSAIKSSGKGIILIDGYPRSVEQMQALDKELNAQNEVIL 111
G+L+ I VE LS I + L+ P++ E++ ALDKEL A+ + L
Sbjct: 102 GKLIAYPIAVEA-LSLIYNKD----LLPNPPKTWEEIPALDKELKAKGKSAL 148
>pdb|1EZO|A Chain A, Global Fold Of Maltodextrin Binding Protein Complexed With
Beta-Cyclodextrin
pdb|1EZP|A Chain A, Global Fold Of Maltodextrin Binding Protein Complexed With
Beta-Cyclodextrin Using Peptide Orientations From
Dipolar Couplings
Length = 370
Score = 26.6 bits (57), Expect = 2.0
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 60 GELVPLEIVVETILSAIKSSGKGIILIDGYPRSVEQMQALDKELNAQNEVIL 111
G+L+ I VE LS I + L+ P++ E++ ALDKEL A+ + L
Sbjct: 101 GKLIAYPIAVEA-LSLIYNKD----LLPNPPKTWEEIPALDKELKAKGKSAL 147
>pdb|1MH3|A Chain A, Maltose Binding-A1 Homeodomain Protein Chimera, Crystal
Form I
pdb|1MH4|A Chain A, Maltose Binding-A1 Homeodomain Protein Chimera, Crystal
Form Ii
Length = 421
Score = 26.6 bits (57), Expect = 2.0
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 60 GELVPLEIVVETILSAIKSSGKGIILIDGYPRSVEQMQALDKELNAQNEVIL 111
G+L+ I VE LS I + L+ P++ E++ ALDKEL A+ + L
Sbjct: 101 GKLIAYPIAVEA-LSLIYNKD----LLPNPPKTWEEIPALDKELKAKGKSAL 147
>pdb|1FQA|A Chain A, Structure Of Maltotetraitol Bound To Open-Form
Maltodextrin Binding Protein In P2(1)crystal Form
pdb|1FQB|A Chain A, Structure Of Maltotriotol Bound To Open-Form Maltodextrin
Binding Protein In P2(1)crystal Form
pdb|1FQD|A Chain A, Crystal Structure Of Maltotetraitol Bound To Closed-Form
Maltodextrin Binding Protein
pdb|1FQC|A Chain A, Crystal Structure Of Maltotriotol Bound To Closed-Form
Maltodextrin Binding Protein
Length = 370
Score = 26.6 bits (57), Expect = 2.0
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 60 GELVPLEIVVETILSAIKSSGKGIILIDGYPRSVEQMQALDKELNAQNEVIL 111
G+L+ I VE LS I + L+ P++ E++ ALDKEL A+ + L
Sbjct: 101 GKLIAYPIAVEA-LSLIYNKD----LLPNPPKTWEEIPALDKELKAKGKSAL 147
>pdb|1LLS|A Chain A, Crystal Structure Of Unliganded Maltose Binding Protein
With Xenon
pdb|3MBP| Maltodextrin-Binding Protein With Bound Maltotriose
pdb|1EZ9|A Chain A, Structure Of Maltotetraitol Bound To Open-Form
Maltodextrin Binding Protein In P1 Crystal Form
pdb|1EZ9|B Chain B, Structure Of Maltotetraitol Bound To Open-Form
Maltodextrin Binding Protein In P1 Crystal Form
pdb|4MBP| Maltodextrin Binding Protein With Bound Maltetrose
pdb|1JW4|A Chain A, Structure Of Ligand-Free Maltodextrin-Binding Protein
pdb|1ANF| Maltodextrin Binding Protein With Bound Maltose
pdb|1DMB| D-Maltodextrin-Binding Protein
pdb|1OMP| D-Maltodextrin-Binding Protein
pdb|1JW5|A Chain A, Structure Of Maltose Bound To Open-Form Maltodextrin-
Binding Protein In P1 Crystal
Length = 370
Score = 26.6 bits (57), Expect = 2.0
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 60 GELVPLEIVVETILSAIKSSGKGIILIDGYPRSVEQMQALDKELNAQNEVIL 111
G+L+ I VE LS I + L+ P++ E++ ALDKEL A+ + L
Sbjct: 101 GKLIAYPIAVEA-LSLIYNKD----LLPNPPKTWEEIPALDKELKAKGKSAL 147
>pdb|1MDQ| Maltodextrin-Binding Protein (Male322) (Maltose-Binding Protein)
Mutant With Ala 301 Replaced By Gly Ser (A301gs)
Complexed With Maltose
Length = 371
Score = 26.6 bits (57), Expect = 2.0
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 60 GELVPLEIVVETILSAIKSSGKGIILIDGYPRSVEQMQALDKELNAQNEVIL 111
G+L+ I VE LS I + L+ P++ E++ ALDKEL A+ + L
Sbjct: 101 GKLIAYPIAVEA-LSLIYNKD----LLPNPPKTWEEIPALDKELKAKGKSAL 147
>pdb|1HSJ|A Chain A, Sarr Mbp Fusion Structure
pdb|1HSJ|B Chain B, Sarr Mbp Fusion Structure
Length = 487
Score = 26.6 bits (57), Expect = 2.0
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 60 GELVPLEIVVETILSAIKSSGKGIILIDGYPRSVEQMQALDKELNAQNEVIL 111
G+L+ I VE LS I + L+ P++ E++ ALDKEL A+ + L
Sbjct: 101 GKLIAYPIAVEA-LSLIYNKD----LLPNPPKTWEEIPALDKELKAKGKSAL 147
>pdb|1JVY|A Chain A, Maltodextrin-Binding Protein Variant D207cA301GSP316C With
Beta-Mercaptoethanol Mixed Disulfides
Length = 372
Score = 26.6 bits (57), Expect = 2.0
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 60 GELVPLEIVVETILSAIKSSGKGIILIDGYPRSVEQMQALDKELNAQNEVIL 111
G+L+ I VE LS I + L+ P++ E++ ALDKEL A+ + L
Sbjct: 102 GKLIAYPIAVEA-LSLIYNKD----LLPNPPKTWEEIPALDKELKAKGKSAL 148
>pdb|1MG1|A Chain A, Htlv-1 Gp21 EctodomainMALTOSE-Binding Protein Chimera
Length = 450
Score = 26.6 bits (57), Expect = 2.0
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 60 GELVPLEIVVETILSAIKSSGKGIILIDGYPRSVEQMQALDKELNAQNEVIL 111
G+L+ I VE LS I + L+ P++ E++ ALDKEL A+ + L
Sbjct: 97 GKLIAYPIAVEA-LSLIYNKD----LLPNPPKTWEEIPALDKELKAKGKSAL 143
>pdb|1GVF|A Chain A, Structure Of Tagatose-1,6-Bisphosphate Aldolase
pdb|1GVF|B Chain B, Structure Of Tagatose-1,6-Bisphosphate Aldolase
Length = 286
Score = 26.2 bits (56), Expect = 2.6
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 105 AQNEVILKSVIEVEVSENTAKERVLGRSRGADDNEKV 141
A+N ++KSV++ S++ + E LGR G +D+ V
Sbjct: 111 AENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSV 147
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND BOSOMAL
Proteins Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 25.8 bits (55), Expect = 3.3
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 17 TDAELIAKNNSETIAHFSTGDLLRAESAKKTERGLLIEK 55
T E+ K E IA + G LLR S ++ ERG ++ K
Sbjct: 268 TGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAK 306
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 25.8 bits (55), Expect = 3.3
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 3 QLFLIIGAPGSGKTTDAELIAKNNSETIAHFSTGDLLRAESAK 45
+ +++G G GKTT +IA + GD L A+ K
Sbjct: 30 EFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEK 72
>pdb|1HDO|A Chain A, Human Biliverdin Ix Beta Reductase: Nadp Complex
pdb|1HE2|A Chain A, Human Biliverdin Ix Beta Reductase: NadpBILIVERDIN IX
Alpha Ternary Complex
pdb|1HE3|A Chain A, Human Biliverdin Ix Beta Reductase: NadpMESOBILIVERDIN IV
Alpha Ternary Complex
pdb|1HE4|A Chain A, Human Biliverdin Ix Beta Reductase: NadpFMN TERNARY
Complex
pdb|1HE5|A Chain A, Human Biliverdin Ix Beta Reductase: NadpLUMICHROME TERNARY
Complex
Length = 206
Score = 25.8 bits (55), Expect = 3.3
Identities = 26/95 (27%), Positives = 42/95 (43%), Gaps = 21/95 (22%)
Query: 7 IIGAPG-SGKTTDAELIAKNNSETI---------------AHFSTGDLLRAESAKKTERG 50
I GA G +G TT A+ + T+ AH GD+L+A KT G
Sbjct: 8 IFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAG 67
Query: 51 --LLIEKFTSQGELVPLEIVVE---TILSAIKSSG 80
+I ++ +L P ++ E I++A+K+ G
Sbjct: 68 QDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHG 102
>pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|B Chain B, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|C Chain C, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
Length = 425
Score = 25.0 bits (53), Expect = 5.7
Identities = 10/22 (45%), Positives = 15/22 (67%)
Query: 2 KQLFLIIGAPGSGKTTDAELIA 23
+ L+ ++G GSGKTT A +A
Sbjct: 98 RNLWFLVGLQGSGKTTTAAKLA 119
>pdb|2NG1| N And Gtpase Domains Of The Signal Sequence Recognition Protein
Ffh From Thermus Aquaticus
Length = 293
Score = 25.0 bits (53), Expect = 5.7
Identities = 10/22 (45%), Positives = 15/22 (67%)
Query: 2 KQLFLIIGAPGSGKTTDAELIA 23
+ L+ ++G GSGKTT A +A
Sbjct: 97 RNLWFLVGLQGSGKTTTAAKLA 118
>pdb|1FFH| N And Gtpase Domains Of The Signal Sequence Recognition Protein
Ffh From Thermus Aquaticus
Length = 294
Score = 25.0 bits (53), Expect = 5.7
Identities = 10/22 (45%), Positives = 15/22 (67%)
Query: 2 KQLFLIIGAPGSGKTTDAELIA 23
+ L+ ++G GSGKTT A +A
Sbjct: 97 RNLWFLVGLQGSGKTTTAAKLA 118
>pdb|1JPN|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPN|B Chain B, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPJ|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
Length = 296
Score = 25.0 bits (53), Expect = 5.7
Identities = 10/22 (45%), Positives = 15/22 (67%)
Query: 2 KQLFLIIGAPGSGKTTDAELIA 23
+ L+ ++G GSGKTT A +A
Sbjct: 98 RNLWFLVGLQGSGKTTTAAKLA 119
>pdb|1NG1| N And Gtpase Domains Of The Signal Sequence Recognition Protein
Ffh From Thermus Aquaticus
pdb|3NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|3NG1|B Chain B, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
Length = 294
Score = 25.0 bits (53), Expect = 5.7
Identities = 10/22 (45%), Positives = 15/22 (67%)
Query: 2 KQLFLIIGAPGSGKTTDAELIA 23
+ L+ ++G GSGKTT A +A
Sbjct: 98 RNLWFLVGLQGSGKTTTAAKLA 119
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 24.6 bits (52), Expect = 7.5
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 6 LIIGAPGSGKTTDAELIA 23
L+ G PG GKTT A +IA
Sbjct: 42 LLFGPPGLGKTTLAHVIA 59
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 24.6 bits (52), Expect = 7.5
Identities = 19/78 (24%), Positives = 32/78 (40%), Gaps = 2/78 (2%)
Query: 6 LIIGAPGSGKTTDAELIAKNNSETIAHFSTGDLLRAESAKKTERGLLIEKFTSQGELVPL 65
L++G PG+GKT A+ IA S D + R + + F + P
Sbjct: 49 LMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASR--VRDMFEQAKKAAPC 106
Query: 66 EIVVETILSAIKSSGKGI 83
I ++ I + + G G+
Sbjct: 107 IIFIDEIDAVGRQRGAGL 124
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 24.6 bits (52), Expect = 7.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 3 QLFLIIGAPGSGKTTDAELIA 23
Q+ +IGA G+GKTT IA
Sbjct: 33 QIVTLIGANGAGKTTTLSAIA 53
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 24.6 bits (52), Expect = 7.5
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 6 LIIGAPGSGKTTDAELIA 23
L+ G PG GKTT A +IA
Sbjct: 42 LLFGPPGLGKTTLAHVIA 59
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 24.6 bits (52), Expect = 7.5
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 6 LIIGAPGSGKTTDAELIA 23
L+ G PG GKTT A +IA
Sbjct: 42 LLFGPPGLGKTTLAHVIA 59
>pdb|1RCF| Flavodoxin Complexed With Flavin Mononucleotide (Fmn)
pdb|1FLV| Flavodoxin
Length = 169
Score = 24.3 bits (51), Expect = 9.7
Identities = 11/35 (31%), Positives = 19/35 (53%)
Query: 26 NSETIAHFSTGDLLRAESAKKTERGLLIEKFTSQG 60
N + +A+F TGD + + G+L EK + +G
Sbjct: 79 NGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRG 113
>pdb|1BF6|B Chain B, Phosphotriesterase Homology Protein From Escherichia Coli
pdb|1BF6|A Chain A, Phosphotriesterase Homology Protein From Escherichia Coli
Length = 291
Score = 24.3 bits (51), Expect = 9.7
Identities = 11/47 (23%), Positives = 25/47 (52%)
Query: 20 ELIAKNNSETIAHFSTGDLLRAESAKKTERGLLIEKFTSQGELVPLE 66
E +A + + +A ++ + + + G++ E TS+G++ PLE
Sbjct: 90 EHVATRSVQELAQEMVDEIEQGIDGTELKAGIIAEIGTSEGKITPLE 136
>pdb|1DX9|A Chain A, W57a Apoflavodoxin From Anabaena
pdb|1DX9|B Chain B, W57a Apoflavodoxin From Anabaena
pdb|1DX9|C Chain C, W57a Apoflavodoxin From Anabaena
pdb|1DX9|D Chain D, W57a Apoflavodoxin From Anabaena
Length = 169
Score = 24.3 bits (51), Expect = 9.7
Identities = 11/35 (31%), Positives = 19/35 (53%)
Query: 26 NSETIAHFSTGDLLRAESAKKTERGLLIEKFTSQG 60
N + +A+F TGD + + G+L EK + +G
Sbjct: 79 NGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRG 113
>pdb|1FTG| Structure Of Apoflavodoxin: Closure Of A TyrosineTRYPTOPHAN
AROMATIC GATE LEADS TO A COMPACT FOLD
pdb|1QHE|A Chain A, Energetics Of A Hydrogen Bond (Charged And Neutral) And Of
A Cation-Pi Interaction In Apoflavodoxin
Length = 168
Score = 24.3 bits (51), Expect = 9.7
Identities = 11/35 (31%), Positives = 19/35 (53%)
Query: 26 NSETIAHFSTGDLLRAESAKKTERGLLIEKFTSQG 60
N + +A+F TGD + + G+L EK + +G
Sbjct: 78 NGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRG 112
>pdb|1L4U|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp And Pt(Ii) At 1.8
Angstrom Resolution
pdb|1L4Y|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp At 2.0 Angstrom
Resolution
Length = 176
Score = 24.3 bits (51), Expect = 9.7
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 6 LIIGAPGSGKTTDAELIAK 24
+++G PGSGK+T +AK
Sbjct: 6 VLVGLPGSGKSTIGRRLAK 24
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.313 0.134 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,000,057
Number of Sequences: 13198
Number of extensions: 35692
Number of successful extensions: 176
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 94
Number of HSP's gapped (non-prelim): 61
length of query: 191
length of database: 2,899,336
effective HSP length: 83
effective length of query: 108
effective length of database: 1,803,902
effective search space: 194821416
effective search space used: 194821416
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)