BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645244|ref|NP_207414.1| inorganic pyrophosphatase
(ppa) [Helicobacter pylori 26695]
(173 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1QEZ|F Chain F, Sulfolobus Acidocaldarius Inorganic Pyr... 169 2e-43
pdb|1JFD|A Chain A, Structure Of Inorganic Pyrophosphatase ... 155 2e-39
pdb|1I40|A Chain A, Structure Of Inorganic Pyrophosphatase ... 154 4e-39
pdb|1MJZ| Structure Of Inorganic Pyrophosphatase Mutant D97n 154 7e-39
pdb|1MJW|A Chain A, Structure Of Inorganic Pyrophosphatase ... 154 7e-39
pdb|1MJX|A Chain A, Structure Of Inorganic Pyrophosphatase ... 154 7e-39
pdb|1MJY|A Chain A, Structure Of Inorganic Pyrophosphatase ... 152 2e-38
pdb|2PRD| Mol_id: 1; Molecule: Pyrophosphate Phosphohydro... 142 2e-35
pdb|1E9G|B Chain B, Structure Of Inorganic Pyrophosphatase 60 2e-10
pdb|1YPP|A Chain A, Acid Anhydride Hydrolase >gi|1942887|pd... 58 7e-10
pdb|1HUK|A Chain A, Refined Structure Of Yeast Inorganic Py... 58 7e-10
pdb|8PRK|B Chain B, The R78k And D117e Active Site Variants... 58 7e-10
pdb|1WGJ|B Chain B, Structure Of Inorganic Pyrophosphatase ... 58 7e-10
pdb|1E9G|A Chain A, Structure Of Inorganic Pyrophosphatase 58 7e-10
pdb|1HUJ|A Chain A, Refined Structure Of Yeast Inorganic Py... 57 2e-09
pdb|117E|A Chain A, The R78k And D117e Active Site Variants... 56 2e-09
pdb|1PYP| Inorganic Pyrophosphatase (E.C.3.6.1.1) 56 2e-09
pdb|1G7U|A Chain A, Crystal Structures Of Kdo8p Synthase In... 25 6.3
pdb|1G7V|A Chain A, Crystal Structures Of Kdo8p Synthase In... 25 6.3
>pdb|1QEZ|F Chain F, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|B Chain B, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|D Chain D, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|E Chain E, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|C Chain C, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|A Chain A, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase
Length = 173
Score = 169 bits (428), Expect = 2e-43
Identities = 81/161 (50%), Positives = 112/161 (69%)
Query: 13 DSLCVVIEISKHSNIKYELDKESGALMVDRVLYGAQNYPANYGFVPNTLGSDGDPVDALV 72
D + V++EI + SNIKYE D E G + VDRVLY + NYP NYGF+P TL DGDP+D LV
Sbjct: 11 DVVNVLVEIPQGSNIKYEYDDEEGVIKVDRVLYTSMNYPFNYGFIPGTLEEDGDPLDVLV 70
Query: 73 LSDVAFQAGSVVKARLVGVLNMEDESGMDEKLIALPIDKIDPTHSYVKDIDDLSKHTLDK 132
+++ GSV++ R +G+L M+DE G D K++A+P DK DP+ S +KDI+DL + T +K
Sbjct: 71 ITNYQLYPGSVIEVRPIGILYMKDEEGEDAKIVAVPKDKTDPSFSNIKDINDLPQATKNK 130
Query: 133 IKHFFETYKDLEPNKWVKVKGFENKESAIKVLEKAIKAYQG 173
I HFFE YK+LEP K+VK+ G+ + A ++ AIK G
Sbjct: 131 IVHFFEHYKELEPGKYVKISGWGSATEAKNRIQLAIKRVSG 171
>pdb|1JFD|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1JFD|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1INO| Recombinant Inorganic Pyrophosphatase From Escherichia Coli
pdb|2EIP|B Chain B, Inorganic Pyrophosphatase
pdb|1IPW|B Chain B, Inorganic Pyrophosphatase From Escherichia Coli With Three
Magnesium Ions
pdb|1FAJ| Inorganic Pyrophosphatase
pdb|2EIP|A Chain A, Inorganic Pyrophosphatase
pdb|1IPW|A Chain A, Inorganic Pyrophosphatase From Escherichia Coli With Three
Magnesium Ions
Length = 175
Score = 155 bits (393), Expect = 2e-39
Identities = 78/149 (52%), Positives = 105/149 (70%), Gaps = 1/149 (0%)
Query: 13 DSLCVVIEISKHSN-IKYELDKESGALMVDRVLYGAQNYPANYGFVPNTLGSDGDPVDAL 71
+ + VVIEI +++ IKYE+DKESGAL VDR + A YP NYG++ +TL DGDPVD L
Sbjct: 13 EDIYVVIEIPANADPIKYEIDKESGALFVDRFMSTAMFYPCNYGYINHTLSLDGDPVDVL 72
Query: 72 VLSDVAFQAGSVVKARLVGVLNMEDESGMDEKLIALPIDKIDPTHSYVKDIDDLSKHTLD 131
V + Q GSV++ R VGVL M DE+G D KL+A+P K+ + ++KD++DL +
Sbjct: 73 VPTPYPLQPGSVIRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLPELLKA 132
Query: 132 KIKHFFETYKDLEPNKWVKVKGFENKESA 160
+I HFFE YKDLE KWVKV+G+EN E+A
Sbjct: 133 QIAHFFEHYKDLEKGKWVKVEGWENAEAA 161
>pdb|1I40|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1I6T|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1OBW|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1OBW|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1OBW|C Chain C, Structure Of Inorganic Pyrophosphatase
pdb|1IGP| Inorganic Pyrophosphatase (E.C.3.6.1.1)
Length = 175
Score = 154 bits (390), Expect = 4e-39
Identities = 78/149 (52%), Positives = 104/149 (69%), Gaps = 1/149 (0%)
Query: 13 DSLCVVIEISKHSN-IKYELDKESGALMVDRVLYGAQNYPANYGFVPNTLGSDGDPVDAL 71
+ + VVIEI +++ IKYE+DKESGAL VDR + A YP NYG++ +TL DGDPVD L
Sbjct: 13 EDIYVVIEIPANADPIKYEIDKESGALFVDRFMSTAMFYPCNYGYINHTLSLDGDPVDVL 72
Query: 72 VLSDVAFQAGSVVKARLVGVLNMEDESGMDEKLIALPIDKIDPTHSYVKDIDDLSKHTLD 131
V + Q GSV + R VGVL M DE+G D KL+A+P K+ + ++KD++DL +
Sbjct: 73 VPTPYPLQPGSVTRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLPELLKA 132
Query: 132 KIKHFFETYKDLEPNKWVKVKGFENKESA 160
+I HFFE YKDLE KWVKV+G+EN E+A
Sbjct: 133 QIAHFFEHYKDLEKGKWVKVEGWENAEAA 161
>pdb|1MJZ| Structure Of Inorganic Pyrophosphatase Mutant D97n
Length = 175
Score = 154 bits (388), Expect = 7e-39
Identities = 77/149 (51%), Positives = 105/149 (69%), Gaps = 1/149 (0%)
Query: 13 DSLCVVIEISKHSN-IKYELDKESGALMVDRVLYGAQNYPANYGFVPNTLGSDGDPVDAL 71
+ + VVIEI +++ IKYE+DKESGAL VDR + A YP NYG++ +TL DGDPVD L
Sbjct: 13 EDIYVVIEIPANADPIKYEIDKESGALFVDRFMSTAMFYPCNYGYINHTLSLDGDPVDVL 72
Query: 72 VLSDVAFQAGSVVKARLVGVLNMEDESGMDEKLIALPIDKIDPTHSYVKDIDDLSKHTLD 131
V + Q GSV++ R VGVL M +E+G D KL+A+P K+ + ++KD++DL +
Sbjct: 73 VPTPYPLQPGSVIRCRPVGVLKMTNEAGEDAKLVAVPHSKLSKEYDHIKDVNDLPELLKA 132
Query: 132 KIKHFFETYKDLEPNKWVKVKGFENKESA 160
+I HFFE YKDLE KWVKV+G+EN E+A
Sbjct: 133 QIAHFFEHYKDLEKGKWVKVEGWENAEAA 161
>pdb|1MJW|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D42n
pdb|1MJW|B Chain B, Structure Of Inorganic Pyrophosphatase Mutant D42n
Length = 175
Score = 154 bits (388), Expect = 7e-39
Identities = 77/149 (51%), Positives = 105/149 (69%), Gaps = 1/149 (0%)
Query: 13 DSLCVVIEISKHSN-IKYELDKESGALMVDRVLYGAQNYPANYGFVPNTLGSDGDPVDAL 71
+ + VVIEI +++ IKYE+DKESGAL V+R + A YP NYG++ +TL DGDPVD L
Sbjct: 13 EDIYVVIEIPANADPIKYEIDKESGALFVNRFMSTAMFYPCNYGYINHTLSLDGDPVDVL 72
Query: 72 VLSDVAFQAGSVVKARLVGVLNMEDESGMDEKLIALPIDKIDPTHSYVKDIDDLSKHTLD 131
V + Q GSV++ R VGVL M DE+G D KL+A+P K+ + ++KD++DL +
Sbjct: 73 VPTPYPLQPGSVIRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLPELLKA 132
Query: 132 KIKHFFETYKDLEPNKWVKVKGFENKESA 160
+I HFFE YKDLE KWVKV+G+EN E+A
Sbjct: 133 QIAHFFEHYKDLEKGKWVKVEGWENAEAA 161
>pdb|1MJX|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D65n
pdb|1MJX|B Chain B, Structure Of Inorganic Pyrophosphatase Mutant D65n
Length = 175
Score = 154 bits (388), Expect = 7e-39
Identities = 77/149 (51%), Positives = 105/149 (69%), Gaps = 1/149 (0%)
Query: 13 DSLCVVIEISKHSN-IKYELDKESGALMVDRVLYGAQNYPANYGFVPNTLGSDGDPVDAL 71
+ + VVIEI +++ IKYE+DKESGAL VDR + A YP NYG++ +TL +GDPVD L
Sbjct: 13 EDIYVVIEIPANADPIKYEIDKESGALFVDRFMSTAMFYPCNYGYINHTLSLNGDPVDVL 72
Query: 72 VLSDVAFQAGSVVKARLVGVLNMEDESGMDEKLIALPIDKIDPTHSYVKDIDDLSKHTLD 131
V + Q GSV++ R VGVL M DE+G D KL+A+P K+ + ++KD++DL +
Sbjct: 73 VPTPYPLQPGSVIRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLPELLKA 132
Query: 132 KIKHFFETYKDLEPNKWVKVKGFENKESA 160
+I HFFE YKDLE KWVKV+G+EN E+A
Sbjct: 133 QIAHFFEHYKDLEKGKWVKVEGWENAEAA 161
>pdb|1MJY|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D70n
pdb|1MJY|B Chain B, Structure Of Inorganic Pyrophosphatase Mutant D70n
Length = 175
Score = 152 bits (385), Expect = 2e-38
Identities = 77/149 (51%), Positives = 104/149 (69%), Gaps = 1/149 (0%)
Query: 13 DSLCVVIEISKHSN-IKYELDKESGALMVDRVLYGAQNYPANYGFVPNTLGSDGDPVDAL 71
+ + VVIEI +++ IKYE+DKESGAL VDR + A YP NYG++ +TL DGDPV+ L
Sbjct: 13 EDIYVVIEIPANADPIKYEIDKESGALFVDRFMSTAMFYPCNYGYINHTLSLDGDPVNVL 72
Query: 72 VLSDVAFQAGSVVKARLVGVLNMEDESGMDEKLIALPIDKIDPTHSYVKDIDDLSKHTLD 131
V + Q GSV + R VGVL M DE+G D KL+A+P K+ + ++KD++DL +
Sbjct: 73 VPTPYPLQPGSVTRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLPELLKA 132
Query: 132 KIKHFFETYKDLEPNKWVKVKGFENKESA 160
+I HFFE YKDLE KWVKV+G+EN E+A
Sbjct: 133 QIAHFFEHYKDLEKGKWVKVEGWENAEAA 161
>pdb|2PRD| Mol_id: 1; Molecule: Pyrophosphate Phosphohydrolase; Chain: Null;
Ec: 3.6.1.1
Length = 174
Score = 142 bits (359), Expect = 2e-35
Identities = 78/175 (44%), Positives = 112/175 (63%), Gaps = 5/175 (2%)
Query: 2 NLEKLEVSHDADSLC-VVIEISKHSNIKYELDKESGALMVDRVLYGAQNYPANYGFVPNT 60
NL+ L V A + +VIE+ + S KYE D + GA+ +DRVL GAQ YP +YGF+P+T
Sbjct: 2 NLKSLPVGDKAPEVVHMVIEVPRGSGNKYEYDPDLGAIKLDRVLPGAQFYPGDYGFIPST 61
Query: 61 LGSDGDPVDALVLSDVAFQAGSVVKARLVGVLNMEDESGMDEKLIALPIDKIDPTHSYVK 120
L DGDP+D LVLS G VV+ R+VG+L MEDE G D K+I + + D +++
Sbjct: 62 LAEDGDPLDGLVLSTYPLLPGVVVEVRVVGLLLMEDEKGGDAKVIGVVAE--DQRLDHIQ 119
Query: 121 DIDDLSKHTLDKIKHFFETYKDLE--PNKWVKVKGFENKESAIKVLEKAIKAYQG 173
DI D+ + +I+HFFETYK LE KWVKV G+ ++++A++ + I Y+G
Sbjct: 120 DIGDVPEGVKQEIQHFFETYKALEAKKGKWVKVTGWRDRKAALEEVRACIARYKG 174
>pdb|1E9G|B Chain B, Structure Of Inorganic Pyrophosphatase
Length = 286
Score = 59.7 bits (143), Expect = 2e-10
Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 31/179 (17%)
Query: 17 VVIEISKHSNIKYELDKES-----------GALMVDRVLYGAQNYPANYGFVPNTLGS-- 63
+V+EI + +N K E+ KE GAL R + Y NYG P T
Sbjct: 45 MVVEIPRWTNAKLEITKEETLNPIIQDTKKGALRFVRNCFPHHGYIHNYGAFPQTWEDPN 104
Query: 64 ----------DGDPVDALVLSDVAFQAGSVVKARLVGVLNMEDESGMDEKLIALPIDKID 113
D DP+D L + + G V + + +G++ + DE D K+IA+ I+ D
Sbjct: 105 VSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN--D 162
Query: 114 PTHSYVKDIDDLSKH---TLDKIKHFFETYK--DLEPNKWVKVKG-FENKESAIKVLEK 166
P + DI+D+ K+ L +F YK D +P G +NK+ A+ ++++
Sbjct: 163 PLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKE 221
>pdb|1YPP|A Chain A, Acid Anhydride Hydrolase
pdb|1YPP|B Chain B, Acid Anhydride Hydrolase
Length = 286
Score = 57.8 bits (138), Expect = 7e-10
Identities = 48/179 (26%), Positives = 79/179 (43%), Gaps = 31/179 (17%)
Query: 17 VVIEISKHSNIKYELDKES-----------GALMVDRVLYGAQNYPANYGFVPNTLGS-- 63
+V+EI + +N K E+ KE G L R + Y NYG P T
Sbjct: 45 MVVEIPRWTNAKLEITKEETLNPIIQDTAKGKLRFVRNCFPHHGYIHNYGAFPQTWEDPN 104
Query: 64 ----------DGDPVDALVLSDVAFQAGSVVKARLVGVLNMEDESGMDEKLIALPIDKID 113
D DP+D L + + G V + + +G++ + DE D K+IA+ I+ D
Sbjct: 105 VSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN--D 162
Query: 114 PTHSYVKDIDDLSKH---TLDKIKHFFETYK--DLEPNKWVKVKG-FENKESAIKVLEK 166
P + DI+D+ K+ L +F YK D +P G +NK+ A+ ++++
Sbjct: 163 PLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKE 221
>pdb|1HUK|A Chain A, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
pdb|1HUK|B Chain B, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
Length = 281
Score = 57.8 bits (138), Expect = 7e-10
Identities = 48/179 (26%), Positives = 79/179 (43%), Gaps = 31/179 (17%)
Query: 17 VVIEISKHSNIKYELDKES-----------GALMVDRVLYGAQNYPANYGFVPNTLGS-- 63
+V+EI + +N K E+ KE G L R + Y NYG P T
Sbjct: 45 MVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWEDPN 104
Query: 64 ----------DGDPVDALVLSDVAFQAGSVVKARLVGVLNMEDESGMDEKLIALPIDKID 113
D DP+D L + + G V + + +G++ + DE D K+IA+ I+ D
Sbjct: 105 VSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN--D 162
Query: 114 PTHSYVKDIDDLSKH---TLDKIKHFFETYK--DLEPNKWVKVKG-FENKESAIKVLEK 166
P + DI+D+ K+ L +F YK D +P G +NK+ A+ ++++
Sbjct: 163 PLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKE 221
>pdb|8PRK|B Chain B, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
pdb|8PRK|A Chain A, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
Length = 287
Score = 57.8 bits (138), Expect = 7e-10
Identities = 48/179 (26%), Positives = 79/179 (43%), Gaps = 31/179 (17%)
Query: 17 VVIEISKHSNIKYELDKES-----------GALMVDRVLYGAQNYPANYGFVPNTLGS-- 63
+V+EI + +N K E+ KE G L R + Y NYG P T
Sbjct: 46 MVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLKFVRNCFPHHGYIHNYGAFPQTWEDPN 105
Query: 64 ----------DGDPVDALVLSDVAFQAGSVVKARLVGVLNMEDESGMDEKLIALPIDKID 113
D DP+D L + + G V + + +G++ + DE D K+IA+ I+ D
Sbjct: 106 VSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN--D 163
Query: 114 PTHSYVKDIDDLSKH---TLDKIKHFFETYK--DLEPNKWVKVKG-FENKESAIKVLEK 166
P + DI+D+ K+ L +F YK D +P G +NK+ A+ ++++
Sbjct: 164 PLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKE 222
>pdb|1WGJ|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1E6A|A Chain A, Fluoride-Inhibited Substrate Complex Of Saccharomyces
Cerevisiae Inorganic Pyrophosphatase
pdb|1WGJ|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1E6A|B Chain B, Fluoride-Inhibited Substrate Complex Of Saccharomyces
Cerevisiae Inorganic Pyrophosphatase
pdb|1WGI|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1WGI|B Chain B, Structure Of Inorganic Pyrophosphatase
Length = 286
Score = 57.8 bits (138), Expect = 7e-10
Identities = 48/179 (26%), Positives = 79/179 (43%), Gaps = 31/179 (17%)
Query: 17 VVIEISKHSNIKYELDKES-----------GALMVDRVLYGAQNYPANYGFVPNTLGS-- 63
+V+EI + +N K E+ KE G L R + Y NYG P T
Sbjct: 45 MVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWEDPN 104
Query: 64 ----------DGDPVDALVLSDVAFQAGSVVKARLVGVLNMEDESGMDEKLIALPIDKID 113
D DP+D L + + G V + + +G++ + DE D K+IA+ I+ D
Sbjct: 105 VSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN--D 162
Query: 114 PTHSYVKDIDDLSKH---TLDKIKHFFETYK--DLEPNKWVKVKG-FENKESAIKVLEK 166
P + DI+D+ K+ L +F YK D +P G +NK+ A+ ++++
Sbjct: 163 PLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKE 221
>pdb|1E9G|A Chain A, Structure Of Inorganic Pyrophosphatase
Length = 286
Score = 57.8 bits (138), Expect = 7e-10
Identities = 48/179 (26%), Positives = 79/179 (43%), Gaps = 31/179 (17%)
Query: 17 VVIEISKHSNIKYELDKES-----------GALMVDRVLYGAQNYPANYGFVPNTLGS-- 63
+V+EI + +N K E+ KE G L R + Y NYG P T
Sbjct: 45 MVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWEDPN 104
Query: 64 ----------DGDPVDALVLSDVAFQAGSVVKARLVGVLNMEDESGMDEKLIALPIDKID 113
D DP+D L + + G V + + +G++ + DE D K+IA+ I+ D
Sbjct: 105 VSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN--D 162
Query: 114 PTHSYVKDIDDLSKH---TLDKIKHFFETYK--DLEPNKWVKVKG-FENKESAIKVLEK 166
P + DI+D+ K+ L +F YK D +P G +NK+ A+ ++++
Sbjct: 163 PLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKE 221
>pdb|1HUJ|A Chain A, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
pdb|1HUJ|B Chain B, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
Length = 281
Score = 56.6 bits (135), Expect = 2e-09
Identities = 47/179 (26%), Positives = 79/179 (43%), Gaps = 31/179 (17%)
Query: 17 VVIEISKHSNIKYELDKES-----------GALMVDRVLYGAQNYPANYGFVPNTLGS-- 63
+V+EI + +N K E+ +E G L R + Y NYG P T
Sbjct: 45 MVVEIPRWTNAKLEITREETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWEDPN 104
Query: 64 ----------DGDPVDALVLSDVAFQAGSVVKARLVGVLNMEDESGMDEKLIALPIDKID 113
D DP+D L + + G V + + +G++ + DE D K+IA+ I+ D
Sbjct: 105 VSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN--D 162
Query: 114 PTHSYVKDIDDLSKH---TLDKIKHFFETYK--DLEPNKWVKVKG-FENKESAIKVLEK 166
P + DI+D+ K+ L +F YK D +P G +NK+ A+ ++++
Sbjct: 163 PLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKE 221
>pdb|117E|A Chain A, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
pdb|117E|B Chain B, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
Length = 286
Score = 56.2 bits (134), Expect = 2e-09
Identities = 47/179 (26%), Positives = 79/179 (43%), Gaps = 31/179 (17%)
Query: 17 VVIEISKHSNIKYELDKES-----------GALMVDRVLYGAQNYPANYGFVPNTLGS-- 63
+V+EI + +N K E+ KE G L R + Y NYG P T
Sbjct: 45 MVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWEDPN 104
Query: 64 ----------DGDPVDALVLSDVAFQAGSVVKARLVGVLNMEDESGMDEKLIALPIDKID 113
D +P+D L + + G V + + +G++ + DE D K+IA+ I+ D
Sbjct: 105 VSHPETKAVGDNEPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN--D 162
Query: 114 PTHSYVKDIDDLSKH---TLDKIKHFFETYK--DLEPNKWVKVKG-FENKESAIKVLEK 166
P + DI+D+ K+ L +F YK D +P G +NK+ A+ ++++
Sbjct: 163 PLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKE 221
>pdb|1PYP| Inorganic Pyrophosphatase (E.C.3.6.1.1)
Length = 285
Score = 56.2 bits (134), Expect = 2e-09
Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 30/184 (16%)
Query: 17 VVIEISKHSNIKYELDKES----------GALMVDRVLYGAQNYPANYGFVPNTLGS--- 63
+V+EI + +N K E+ KE G L R + Y NYG P T
Sbjct: 45 MVVEIPRWTNAKLEITKEETLNPIIQNTKGKLRFVRNCFPHHGYIHNYGAFPQTWEDPNV 104
Query: 64 ---------DGDPVDALVLSDVAFQAGSVVKARLVGVLNMEDESGMDEKLIALPIDKIDP 114
D +P+D L + + G V + + +G++ + DE D K+IA+ I+ DP
Sbjct: 105 SHPETKAVGDNNPIDVLQIGETIAYTGQVKEVKALGIMALLDEGETDWKVIAIDIN--DP 162
Query: 115 THSYVKDIDDLSKH---TLDKIKHFFETYK--DLEPNKWVKVKG-FENKESAIKVLEKAI 168
+ DI+D+ K+ L +F YK D +P G +NK+ A+ ++++
Sbjct: 163 LAPKLNDIEDVEKYFPGLLRATDEWFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKETH 222
Query: 169 KAYQ 172
+++
Sbjct: 223 NSWK 226
>pdb|1G7U|A Chain A, Crystal Structures Of Kdo8p Synthase In Its Binary Complex
With Substrate Phosphoenol Pyruvate
Length = 284
Score = 24.6 bits (52), Expect = 6.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 106 ALPIDKIDPTHSYVKDIDDLSK 127
ALP+ K++P +K IDDL K
Sbjct: 254 ALPLAKLEPFLKQMKAIDDLVK 275
>pdb|1G7V|A Chain A, Crystal Structures Of Kdo8p Synthase In Its Binary
Complexes With The Mechanism-Based Inhibitor
pdb|1D9E|A Chain A, Structure Of E. Coli Kdo8p Synthase
pdb|1D9E|B Chain B, Structure Of E. Coli Kdo8p Synthase
pdb|1D9E|C Chain C, Structure Of E. Coli Kdo8p Synthase
pdb|1D9E|D Chain D, Structure Of E. Coli Kdo8p Synthase
pdb|1GG0|A Chain A, Crystal Structure Analysis Of Kdop Synthase At 3.0 A
Length = 284
Score = 24.6 bits (52), Expect = 6.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 106 ALPIDKIDPTHSYVKDIDDLSK 127
ALP+ K++P +K IDDL K
Sbjct: 254 ALPLAKLEPFLKQMKAIDDLVK 275
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.314 0.135 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,059,441
Number of Sequences: 13198
Number of extensions: 44855
Number of successful extensions: 116
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93
Number of HSP's gapped (non-prelim): 19
length of query: 173
length of database: 2,899,336
effective HSP length: 82
effective length of query: 91
effective length of database: 1,817,100
effective search space: 165356100
effective search space used: 165356100
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)