BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645246|ref|NP_207416.1| hypothetical protein
[Helicobacter pylori 26695]
(120 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1DFK|Z Chain Z, Nucleotide-Free Scallop Myosin S1-Near ... 25 1.8
pdb|1SCM|C Chain C, Myosin (Regulatory Domain) 25 1.8
pdb|1KK8|C Chain C, Scallop Myosin (S1-Adp-Befx) In The Act... 25 1.8
pdb|1KK7|Z Chain Z, Scallop Myosin In The Near Rigor Confor... 25 1.8
pdb|1QI1|A Chain A, Ternary Complex Of An Nadp Dependent Al... 23 9.0
>pdb|1DFK|Z Chain Z, Nucleotide-Free Scallop Myosin S1-Near Rigor State
pdb|1DFL|X Chain X, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|Z Chain Z, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
Length = 152
Score = 25.4 bits (54), Expect = 1.8
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 63 AFLRGETLLCKGIKVNNQTFNLVSGTLSFLGKKQTPMKDVL 103
AF G+ C GI N+ V GT +G+K P ++ L
Sbjct: 28 AFKLGDVCRCLGINPRNEDVFAVGGTHK-MGEKSLPFEEFL 67
>pdb|1SCM|C Chain C, Myosin (Regulatory Domain)
Length = 149
Score = 25.4 bits (54), Expect = 1.8
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 63 AFLRGETLLCKGIKVNNQTFNLVSGTLSFLGKKQTPMKDVL 103
AF G+ C GI N+ V GT +G+K P ++ L
Sbjct: 27 AFKLGDVCRCLGINPRNEDVFAVGGTHK-MGEKSLPFEEFL 66
>pdb|1KK8|C Chain C, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 154
Score = 25.4 bits (54), Expect = 1.8
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 63 AFLRGETLLCKGIKVNNQTFNLVSGTLSFLGKKQTPMKDVL 103
AF G+ C GI N+ V GT +G+K P ++ L
Sbjct: 30 AFKLGDVCRCLGINPRNEDVFAVGGTHK-MGEKSLPFEEFL 69
>pdb|1KK7|Z Chain Z, Scallop Myosin In The Near Rigor Conformation
pdb|1L2O|C Chain C, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1WDC|C Chain C, Scallop Myosin Regulatory Domain
pdb|1B7T|Z Chain Z, Myosin Digested By Papain
Length = 156
Score = 25.4 bits (54), Expect = 1.8
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 63 AFLRGETLLCKGIKVNNQTFNLVSGTLSFLGKKQTPMKDVL 103
AF G+ C GI N+ V GT +G+K P ++ L
Sbjct: 30 AFKLGDVCRCLGINPRNEDVFAVGGTHK-MGEKSLPFEEFL 69
>pdb|1QI1|A Chain A, Ternary Complex Of An Nadp Dependent Aldehyde
Dehydrogenase
pdb|1QI1|B Chain B, Ternary Complex Of An Nadp Dependent Aldehyde
Dehydrogenase
pdb|1QI1|C Chain C, Ternary Complex Of An Nadp Dependent Aldehyde
Dehydrogenase
pdb|1QI1|D Chain D, Ternary Complex Of An Nadp Dependent Aldehyde
Dehydrogenase
Length = 475
Score = 23.1 bits (48), Expect = 9.0
Identities = 8/22 (36%), Positives = 15/22 (67%)
Query: 83 NLVSGTLSFLGKKQTPMKDVLV 104
N+++G + G++ T +K VLV
Sbjct: 271 NIIAGAFGYSGQRSTAVKRVLV 292
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.325 0.142 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 581,088
Number of Sequences: 13198
Number of extensions: 19647
Number of successful extensions: 44
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 43
Number of HSP's gapped (non-prelim): 5
length of query: 120
length of database: 2,899,336
effective HSP length: 77
effective length of query: 43
effective length of database: 1,883,090
effective search space: 80972870
effective search space used: 80972870
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)