BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645247|ref|NP_207417.1|
UDP-N-acetylmuramate-alanine ligase (murC) [Helicobacter pylori 26695]
(449 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1J6U|A Chain A, Crystal Structure Of Udp-N-Acetylmurama... 176 5e-45
pdb|1B3O|B Chain B, Ternary Complex Of Human Type-Ii Inosin... 32 0.15
pdb|1JR1|A Chain A, Crystal Structure Of Inosine Monophosph... 32 0.19
pdb|1QIR|A Chain A, Aspartate Aminotransferase From Escheri... 30 0.72
pdb|1FSZ| Crystal Structure Of The Cell-Division Protein ... 30 0.72
pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor >gi|1697482... 28 2.1
pdb|2AAT| Aspartate Aminotransferase (E.C.2.6.1.1) Mutant... 28 2.1
pdb|1FHJ|A Chain A, Crystal Structure Of Aquomet Hemoglobin... 28 2.1
pdb|1QIS|A Chain A, Aspartate Aminotransferase From Escheri... 28 2.1
pdb|1QIT|A Chain A, Aspartate Aminotransferase From Escheri... 28 2.7
pdb|2AY8|A Chain A, Aromatic Amino Acid Aminotransferase Wi... 28 2.7
pdb|1EWD|A Chain A, Fructose 1,6-Bisphosphate Aldolase From... 27 3.6
pdb|3CCP| Yeast Cytochrome c Peroxidase (E.C.1.11.1.5) Mu... 27 3.6
pdb|1QPW|A Chain A, Crystal Structure Determination Of Porc... 27 3.6
pdb|1KAF|A Chain A, Dna Binding Domain Of The Phage T4 Tran... 27 4.7
pdb|1ARI|A Chain A, Aspartate Aminotransferase, W140h Mutan... 27 6.1
pdb|1IR6|A Chain A, Crystal Structure Of Exonuclease Recj B... 27 6.1
pdb|1SPA| Aspartate Aminotransferase (E.C.2.6.1.1) Mutant... 27 6.1
pdb|1AHX|A Chain A, Aspartate Aminotransferase Hexamutant >... 26 8.0
pdb|1YOO| Aspartate Aminotransferase Mutant Atb17 With Is... 26 8.0
pdb|6ALD|A Chain A, Rabbit Muscle Aldolase AFRUCTOSE-1,6-Bi... 26 8.0
pdb|1J4E|A Chain A, Fructose-1,6-Bisphosphate Aldolase Cova... 26 8.0
pdb|1ARS| Aspartate Aminotransferase (E.C.2.6.1.1) Comple... 26 8.0
pdb|1AIA|A Chain A, Aspartate Aminotransferase (E.C.2.6.1.1... 26 8.0
pdb|1ART| Aspartate Aminotransferase (E.C.2.6.1.1) Comple... 26 8.0
pdb|1CZE|A Chain A, Aspartate Aminotransferase Mutant Atb17... 26 8.0
pdb|1AAM| Aspartate Aminotransferase (E.C.2.6.1.1) Mutant... 26 8.0
pdb|5EAA|A Chain A, Aspartate Aminotransferase From E. Coli... 26 8.0
pdb|1ADO|A Chain A, Fructose 1,6-Bisphosphate Aldolase From... 26 8.0
pdb|1IX6|A Chain A, Aspartate Aminotransferase Active Site ... 26 8.0
pdb|1ALD| Aldolase A (E.C.4.1.2.13) >gi|4930167|pdb|2ALD|... 26 8.0
pdb|3AAT| Aspartate Aminotransferase (E.C.2.6.1.1) (Mutan... 26 8.0
>pdb|1J6U|A Chain A, Crystal Structure Of Udp-N-Acetylmuramate--Alanine Ligase
(Tm0231) From Thermotoga Maritima At 2.3 A Resolution
Length = 469
Score = 176 bits (446), Expect = 5e-45
Identities = 141/456 (30%), Positives = 221/456 (47%), Gaps = 46/456 (10%)
Query: 16 KIHFIGIGGIGISGLAKYLKAQGATISGSDIAISPSVKYLKALGVEINIPHDPKAINNQD 75
KIHF+GIGGIG S +A + + G + GS+I + YL+ LG+ I +PH + D
Sbjct: 14 KIHFVGIGGIGXSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPD 73
Query: 76 VIIHSAIIKEDNKEIQRAKELEIPILSRKDALYSILK--DKRVFSVCGAHGKSSITA--- 130
++I + +++DN EI RA+ +PI +R LK K F+V G GK++ TA
Sbjct: 74 LVIKTPAVRDDNPEIVRARXERVPIENRLHYFRDTLKREKKEEFAVTGTDGKTTTTAXVA 133
Query: 131 -MLSAICPSFGAIIGAHSKEFDSNVRESANDSLVFEADESDSSFLFSNPYAAIVPNTEPE 189
+L + S +G + E N +V+E DES+ F +P I+ N +
Sbjct: 134 HVLKHLRKSPTVFLGGIXDSLEHGNYEKGNGPVVYELDESEEFFSEFSPNYLIITNARGD 193
Query: 190 HLEHYGHDLERFFFAYEYFLDHAQKRVIYKEDPFLKNYSKNAIVLEKKDIYNIQ------ 243
HLE+YG+ L R+ A+E + V + ED L ++ + KK Y ++
Sbjct: 194 HLENYGNSLTRYRSAFEKISRNTDLVVTFAEDE-LTSHLGDVTFGVKKGTYTLEXRSASR 252
Query: 244 -----YILKDGEPYTSFELKDLGAFLVWGLGEHNATNASLAILSALDEL--HLEEIRNNL 296
+ K+G+ Y +LK G HN NA LA+++ D L L + L
Sbjct: 253 AEQKAXVEKNGKRYLELKLKVPGF--------HNVLNA-LAVIALFDSLGYDLAPVLEAL 303
Query: 297 LNFKGIKKRFDIL---QKNALILIDDYAHHPTEISATLKSAR-IYANLLNTQEKIIVIWQ 352
F+G+ +RF I + + +IDDYAH P EI L++A+ ++ N EKI+VI+Q
Sbjct: 304 EEFRGVHRRFSIAFHDPETNIYVIDDYAHTPDEIRNLLQTAKEVFEN-----EKIVVIFQ 358
Query: 353 AHKYSRLMDNLEEFKKCFSEHCDRLIILPVYSASEVKRD-IDLKAHFKHYNPTFIDRVRK 411
H+YSRL F K + D +++ VY A E K++ I K + + + K
Sbjct: 359 PHRYSRLEREDGNFAKAL-QLADEVVVTEVYDAFEEKKNGISGKXIWDS-----LKSLGK 412
Query: 412 KGDFLELLVN-DNVVETIEKGFVIGFGAGDITYQLR 446
+ F+E L + V+ E + GAGDI Y R
Sbjct: 413 EAYFVEKLPELEKVISVSENTVFLFVGAGDIIYSSR 448
>pdb|1B3O|B Chain B, Ternary Complex Of Human Type-Ii Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
Dinucleotide
pdb|1B3O|A Chain A, Ternary Complex Of Human Type-Ii Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
Dinucleotide
Length = 514
Score = 32.0 bits (71), Expect = 0.15
Identities = 28/109 (25%), Positives = 54/109 (48%), Gaps = 18/109 (16%)
Query: 74 QDVIIHSA--IIKEDNKEIQRAKELEIPILSRKDALYSI-----LKDKRVFSVCGAHGKS 126
+D+++ A +KE N+ +QR+K+ ++PI++ D L +I LK R + + K
Sbjct: 183 EDLVVAPAGITLKEANEILQRSKKGKLPIVNEDDELVAIIARTDLKKNRDYPLASKDAKK 242
Query: 127 SITAMLSAICPSFGAIIGAH--SKEFDSNVRESANDSLVFEADESDSSF 173
+ +C GA IG H K + ++ D +V ++ + +S F
Sbjct: 243 QL------LC---GAAIGTHEDDKYRLDLLAQAGVDVVVLDSSQGNSIF 282
>pdb|1JR1|A Chain A, Crystal Structure Of Inosine Monophosphate Dehydrogenase
In Complex With Mycophenolic Acid
pdb|1JR1|B Chain B, Crystal Structure Of Inosine Monophosphate Dehydrogenase
In Complex With Mycophenolic Acid
Length = 514
Score = 31.6 bits (70), Expect = 0.19
Identities = 23/83 (27%), Positives = 42/83 (49%), Gaps = 16/83 (19%)
Query: 74 QDVIIHSA--IIKEDNKEIQRAKELEIPILSRKDALYSI-----LKDKRVFSVCGAHGKS 126
+D+++ A +KE N+ +QR+K+ ++PI++ D L +I LK R + + K
Sbjct: 183 EDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKNRDYPLASKDAKK 242
Query: 127 SITAMLSAICPSFGAIIGAHSKE 149
+ +C GA IG H +
Sbjct: 243 QL------LC---GAAIGTHEDD 256
>pdb|1QIR|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191y
Mutation, With Bound Maleate
Length = 396
Score = 29.6 bits (65), Expect = 0.72
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 291 EIRNNLLNFKGIKKRFDILQKNALILIDDYAHHPTEISATLKSARIYANLLNTQEKIIVI 350
+ N+ L+F + + Q ++L Y H+PT I TL+ + A L + + +
Sbjct: 151 DAENHTLDFDALINSLNEAQAGDVVLFHGYCHNPTGIDPTLEQWQTLAQLSVEKGWLPLF 210
Query: 351 WQAHK-YSRLMDNLEEFKKCFSEHCDRLIILPVYS 384
A++ ++R ++ E + F+ LI+ YS
Sbjct: 211 DFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYS 245
>pdb|1FSZ| Crystal Structure Of The Cell-Division Protein Ftsz At 2.8a
Resolution
Length = 372
Score = 29.6 bits (65), Expect = 0.72
Identities = 18/66 (27%), Positives = 33/66 (49%), Gaps = 7/66 (10%)
Query: 360 MDNLEEFKKCFSEHCDRLIILPVYSASEVKRDIDLKAHFKHYNPTFIDRVRKKGDFLELL 419
M+ LE K +H D L+++P E+ ++ LK FK + I+ V+ +EL+
Sbjct: 174 MEGLERLK----QHTDTLVVIPNEKLFEIVPNMPLKLAFKVADEVLINAVK---GLVELI 226
Query: 420 VNDNVV 425
D ++
Sbjct: 227 TKDGLI 232
>pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor
pdb|1J7N|A Chain A, Anthrax Toxin Lethal Factor
pdb|1JKY|A Chain A, Crystal Structure Of The Anthrax Lethal Factor (Lf): Wild-
Type Lf Complexed With The N-Terminal Sequence Of Mapkk2
Length = 776
Score = 28.1 bits (61), Expect = 2.1
Identities = 22/90 (24%), Positives = 38/90 (41%), Gaps = 4/90 (4%)
Query: 137 PSFGAIIGAHSKEFDSNVRESANDSLVFEADESDSSFLFSNPYAAIVPNTEPEHLEHYGH 196
PS G + S+ F + +D + D++ S + ++ + E +L YG
Sbjct: 671 PSKGVELRNDSEGFIHEFGHAVDDYAGYLLDKNQSDLVTNSKKFIDIFKEEGSNLTSYGR 730
Query: 197 DLERFFFAYEYFL----DHAQKRVIYKEDP 222
E FFA + L DHA++ + K P
Sbjct: 731 TNEAEFFAEAFRLMHSTDHAERLKVQKNAP 760
>pdb|2AAT| Aspartate Aminotransferase (E.C.2.6.1.1) Mutant K258a Complex With
Pyridoxamine Phosphate (PMP)
Length = 396
Score = 28.1 bits (61), Expect = 2.1
Identities = 22/97 (22%), Positives = 45/97 (45%), Gaps = 1/97 (1%)
Query: 291 EIRNNLLNFKGIKKRFDILQKNALILIDDYAHHPTEISATLKSARIYANLLNTQEKIIVI 350
+ N+ L+F + + Q ++L H+PT I TL+ + A L + + +
Sbjct: 151 DAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLF 210
Query: 351 WQAHK-YSRLMDNLEEFKKCFSEHCDRLIILPVYSAS 386
A++ ++R ++ E + F+ LI+ YSA+
Sbjct: 211 DFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSAN 247
>pdb|1FHJ|A Chain A, Crystal Structure Of Aquomet Hemoglobin-I Of The Maned
Wolf (Chrysocyon Brachyurus) At 2.0 Resolution.
pdb|1FHJ|C Chain C, Crystal Structure Of Aquomet Hemoglobin-I Of The Maned
Wolf (Chrysocyon Brachyurus) At 2.0 Resolution
Length = 141
Score = 28.1 bits (61), Expect = 2.1
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 9/54 (16%)
Query: 281 LSALDELHLEEIRNNLLNFKGIKKRFDILQKNALILIDDYAHHPTEISATLKSA 334
LSAL +LH ++R + +NFK + + +L+ HHPTE + + ++
Sbjct: 80 LSALSDLHAYKLRVDPVNFKLL---------SHCLLVTLACHHPTEFTPAVHAS 124
>pdb|1QIS|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191f
Mutation, With Bound Maleate
Length = 396
Score = 28.1 bits (61), Expect = 2.1
Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 291 EIRNNLLNFKGIKKRFDILQKNALILIDDYAHHPTEISATLKSARIYANLLNTQEKIIVI 350
+ N+ L+F + + Q ++L + H+PT I TL+ + A L + + +
Sbjct: 151 DAENHTLDFDALINSLNEAQAGDVVLFHGFCHNPTGIDPTLEQWQTLAQLSVEKGWLPLF 210
Query: 351 WQAHK-YSRLMDNLEEFKKCFSEHCDRLIILPVYS 384
A++ ++R ++ E + F+ LI+ YS
Sbjct: 211 DFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYS 245
>pdb|1QIT|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191w
Mutation, With Bound Maleate
Length = 396
Score = 27.7 bits (60), Expect = 2.7
Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 291 EIRNNLLNFKGIKKRFDILQKNALILIDDYAHHPTEISATLKSARIYANLLNTQEKIIVI 350
+ N+ L+F + + Q ++L + H+PT I TL+ + A L + + +
Sbjct: 151 DAENHTLDFDALINSLNEAQAGDVVLFHGWCHNPTGIDPTLEQWQTLAQLSVEKGWLPLF 210
Query: 351 WQAHK-YSRLMDNLEEFKKCFSEHCDRLIILPVYS 384
A++ ++R ++ E + F+ LI+ YS
Sbjct: 211 DFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYS 245
>pdb|2AY8|A Chain A, Aromatic Amino Acid Aminotransferase With
4-(2-Thienyl)butyric Acid
pdb|2AY1|A Chain A, Aromatic Amino Acid Aminotransferase With
4-Aminohydrocinnamic Acid
pdb|2AY4|A Chain A, Aromatic Amino Acid Aminotransferase With
3-(P-Tolyl)propionic Acid
pdb|2AY6|A Chain A, Aromatic Amino Acid Aminotransferase With 3-Indolebutyric
Acid
pdb|1AY8|A Chain A, Aromatic Amino Acid Aminotransferase Complex With
3-Phenylpropionate
pdb|1AY4|A Chain A, Aromatic Amino Acid Aminotransferase Without Substrate
pdb|2AY3|A Chain A, Aromatic Amino Acid Aminotransferase With
3-(3,4-Dimethoxyphenyl)propionic Acid
pdb|2AY2|A Chain A, Aromatic Amino Acid Aminotransferase With Cyclohexane
Propionic Acid
pdb|2AY5|A Chain A, Aromatic Amino Acid Aminotransferase With
3-Indolepropionic Acid
pdb|2AY7|A Chain A, Aromatic Amino Acid Aminotransferase With 4-Phenylbutyric
Acid
pdb|1AY5|A Chain A, Aromatic Amino Acid Aminotransferase Complex With Maleate
pdb|2AY9|A Chain A, Aromatic Amino Acid Aminotransferase With 5-Phenylvaleric
Acid
pdb|1AY4|B Chain B, Aromatic Amino Acid Aminotransferase Without Substrate
pdb|2AY8|B Chain B, Aromatic Amino Acid Aminotransferase With
4-(2-Thienyl)butyric Acid
pdb|2AY1|B Chain B, Aromatic Amino Acid Aminotransferase With
4-Aminohydrocinnamic Acid
pdb|2AY4|B Chain B, Aromatic Amino Acid Aminotransferase With
3-(P-Tolyl)propionic Acid
pdb|2AY6|B Chain B, Aromatic Amino Acid Aminotransferase With 3-Indolebutyric
Acid
pdb|1AY8|B Chain B, Aromatic Amino Acid Aminotransferase Complex With
3-Phenylpropionate
pdb|2AY3|B Chain B, Aromatic Amino Acid Aminotransferase With
3-(3,4-Dimethoxyphenyl)propionic Acid
pdb|2AY2|B Chain B, Aromatic Amino Acid Aminotransferase With Cyclohexane
Propionic Acid
pdb|2AY5|B Chain B, Aromatic Amino Acid Aminotransferase With
3-Indolepropionic Acid
pdb|2AY7|B Chain B, Aromatic Amino Acid Aminotransferase With 4-Phenylbutyric
Acid
pdb|1AY5|B Chain B, Aromatic Amino Acid Aminotransferase Complex With Maleate
pdb|2AY9|B Chain B, Aromatic Amino Acid Aminotransferase With 5-Phenylvaleric
Acid
Length = 394
Score = 27.7 bits (60), Expect = 2.7
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 297 LNFKGIKKRFDILQKNALILIDDYAHHPTEISATLKSARIYANLLNTQEKIIVIWQAHKY 356
++F+G+K +K ++L+ H+PT + TL A++L + +I A Y
Sbjct: 154 VDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLA--Y 211
Query: 357 SRLMDNLEE 365
D LEE
Sbjct: 212 QGFGDGLEE 220
>pdb|1EWD|A Chain A, Fructose 1,6-Bisphosphate Aldolase From Rabbit Muscle
pdb|1EWD|B Chain B, Fructose 1,6-Bisphosphate Aldolase From Rabbit Muscle
pdb|1EWD|C Chain C, Fructose 1,6-Bisphosphate Aldolase From Rabbit Muscle
pdb|1EWD|D Chain D, Fructose 1,6-Bisphosphate Aldolase From Rabbit Muscle
Length = 363
Score = 27.3 bits (59), Expect = 3.6
Identities = 39/144 (27%), Positives = 59/144 (40%), Gaps = 28/144 (19%)
Query: 100 ILSRKDALYSILKDKRVFSVCGAHGKSSITAM--LSAICPSF---GAI---------IGA 145
++ K + I+ DK V + G +G+++ + LS C + GA IG
Sbjct: 96 VIKSKGGVVGIMVDKGVVPLAGTNGETTTQGLDGLSERCAQYKKDGADFAKWRCVLKIGE 155
Query: 146 HSKEFDSNVRESANDSLVFEADESDSSFLFSNPYAAIVPNTEPEHLEHYGHDLERFFFAY 205
H+ + + E+AN + +S N IVP EPE L HDL+R +
Sbjct: 156 HTPSALA-IMENANVLARY------ASICQQN---GIVPIVEPEILPDGDHDLKRCQYVT 205
Query: 206 EYFLDHAQKRV----IYKEDPFLK 225
E L K + IY E LK
Sbjct: 206 EKVLAAVYKALSDHHIYLEGTLLK 229
>pdb|3CCP| Yeast Cytochrome c Peroxidase (E.C.1.11.1.5) Mutant With Trp 191
Replaced By Phe (W191F)
pdb|1DCC| Cytochrome C Peroxidase (E.C.1.11.1.5) Mutant With Met Ile Added
At N-Terminus And Trp 191 Replaced By Phe (Mi,W191f)
Complexed With Dioxygen
Length = 296
Score = 27.3 bits (59), Expect = 3.6
Identities = 21/97 (21%), Positives = 37/97 (37%), Gaps = 5/97 (5%)
Query: 111 LKDKRVFSVCGAHGKSSITAMLSAICPSFGAIIGAHSKEFDSNV-----RESANDSLVFE 165
+ D+ V ++ GAH S FGA + EF N+ + ND+ +
Sbjct: 165 MNDREVVALMGAHALGKTHLKNSGYEGPFGAANNVFTNEFYLNLLNEDWKLEKNDANNEQ 224
Query: 166 ADESDSSFLFSNPYAAIVPNTEPEHLEHYGHDLERFF 202
D + Y+ I ++ Y +D ++FF
Sbjct: 225 WDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFF 261
>pdb|1QPW|A Chain A, Crystal Structure Determination Of Porcine Hemoglobin At
1.8a Resolution
pdb|1QPW|C Chain C, Crystal Structure Determination Of Porcine Hemoglobin At
1.8a Resolution
pdb|2PGH|A Chain A, Hemoglobin (Aquomet)
pdb|2PGH|C Chain C, Hemoglobin (Aquomet)
Length = 141
Score = 27.3 bits (59), Expect = 3.6
Identities = 15/54 (27%), Positives = 30/54 (54%), Gaps = 9/54 (16%)
Query: 281 LSALDELHLEEIRNNLLNFKGIKKRFDILQKNALILIDDYAHHPTEISATLKSA 334
LSAL +LH ++R + +NFK + + +L+ AHHP + + ++ ++
Sbjct: 80 LSALSDLHAHKLRVDPVNFKLL---------SHCLLVTLAAHHPDDFNPSVHAS 124
>pdb|1KAF|A Chain A, Dna Binding Domain Of The Phage T4 Transcription Factor
Mota (Aa105-211)
pdb|1KAF|B Chain B, Dna Binding Domain Of The Phage T4 Transcription Factor
Mota (Aa105-211)
pdb|1KAF|C Chain C, Dna Binding Domain Of The Phage T4 Transcription Factor
Mota (Aa105-211)
pdb|1KAF|D Chain D, Dna Binding Domain Of The Phage T4 Transcription Factor
Mota (Aa105-211)
pdb|1KAF|F Chain F, Dna Binding Domain Of The Phage T4 Transcription Factor
Mota (Aa105-211)
pdb|1KAF|E Chain E, Dna Binding Domain Of The Phage T4 Transcription Factor
Mota (Aa105-211)
Length = 108
Score = 26.9 bits (58), Expect = 4.7
Identities = 16/51 (31%), Positives = 25/51 (48%), Gaps = 3/51 (5%)
Query: 220 EDPFLKNYSKNAIVLEKKDIYNIQYIL---KDGEPYTSFELKDLGAFLVWG 267
+D LK KN VL+K +IY Y+ K +FE+ + G ++G
Sbjct: 11 KDLMLKLLDKNGFVLKKVEIYRSNYLAILEKRTNGIRNFEINNNGNMRIFG 61
>pdb|1ARI|A Chain A, Aspartate Aminotransferase, W140h Mutant, Maleate Complex
pdb|1ARI|B Chain B, Aspartate Aminotransferase, W140h Mutant, Maleate Complex
Length = 396
Score = 26.6 bits (57), Expect = 6.1
Identities = 28/133 (21%), Positives = 56/133 (42%), Gaps = 3/133 (2%)
Query: 255 FELKDLGAFLVWGLGEHNATNASLAILSALD--ELHLEEIRNNLLNFKGIKKRFDILQKN 312
F K+ VW + + S+ + L+ E + N+ L+F + + Q
Sbjct: 113 FLAKNTSVKRVWVSNPSHPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAG 172
Query: 313 ALILIDDYAHHPTEISATLKSARIYANLLNTQEKIIVIWQAHK-YSRLMDNLEEFKKCFS 371
++L H+PT I TL+ + A L + + + A++ ++R ++ E + F+
Sbjct: 173 DVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFA 232
Query: 372 EHCDRLIILPVYS 384
LI+ YS
Sbjct: 233 AMHKELIVASSYS 245
>pdb|1IR6|A Chain A, Crystal Structure Of Exonuclease Recj Bound To Manganese
Length = 424
Score = 26.6 bits (57), Expect = 6.1
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 121 GAHGKSSITAMLSAICPSFGAIIGAHSKEFDSNVRESA 158
G H +++ AM A+ P+F A + A++ F VRE A
Sbjct: 353 GGHKEAAGFAMDEALFPAFKARVEAYAARFPDPVREVA 390
>pdb|1SPA| Aspartate Aminotransferase (E.C.2.6.1.1) Mutant With Asp 222
Replaced By Ala (D222a) Reconstructed With
N(1)-Methylated Pyridoxal-5'-Phosphate
pdb|1ASC| Aspartate Aminotransferase (E.C.2.6.1.1) Mutant With Asp 223
Replaced By Ala (D223a) And Complexed With
N-Methyl-Pyridoxal-5'-Phosphate
pdb|1ASB| Aspartate Aminotransferase (E.C.2.6.1.1) Mutant With Asp 223
Replaced By Ala (D223a) And Complexed With
Pyridoxal-5'-Phosphate And Maleate
Length = 396
Score = 26.6 bits (57), Expect = 6.1
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 291 EIRNNLLNFKGIKKRFDILQKNALILIDDYAHHPTEISATLKSARIYANLLNTQEKIIVI 350
+ N+ L+F + + Q ++L H+PT I TL+ + A L + + +
Sbjct: 151 DAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLF 210
Query: 351 WQAHK-YSRLMDNLEEFKKCFSEHCDRLIILPVYS 384
A++ ++R ++ E + F+ LI+ YS
Sbjct: 211 AFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYS 245
>pdb|1AHX|A Chain A, Aspartate Aminotransferase Hexamutant
pdb|1AHX|B Chain B, Aspartate Aminotransferase Hexamutant
pdb|1AHF|A Chain A, Aspartate Aminotransferase Hexamutant
pdb|1AHF|B Chain B, Aspartate Aminotransferase Hexamutant
pdb|1AHE|A Chain A, Aspartate Aminotransferase Hexamutant
pdb|1AHE|B Chain B, Aspartate Aminotransferase Hexamutant
pdb|1AHY|A Chain A, Aspartate Aminotransferase Hexamutant
pdb|1AHY|B Chain B, Aspartate Aminotransferase Hexamutant
pdb|1AHG|A Chain A, Aspartate Aminotransferase Hexamutant
pdb|1AHG|B Chain B, Aspartate Aminotransferase Hexamutant
Length = 396
Score = 26.2 bits (56), Expect = 8.0
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 291 EIRNNLLNFKGIKKRFDILQKNALILIDDYAHHPTEISATLKSARIYANLLNTQEKIIVI 350
+ N+ L+F + + Q ++L H+PT I TL+ + A L + + +
Sbjct: 151 DAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLF 210
Query: 351 WQAHK-YSRLMDNLEEFKKCFSEHCDRLIILPVYS 384
A++ ++R ++ E + F+ LI+ YS
Sbjct: 211 DFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYS 245
>pdb|1YOO| Aspartate Aminotransferase Mutant Atb17 With Isovaleric Acid
Length = 396
Score = 26.2 bits (56), Expect = 8.0
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 291 EIRNNLLNFKGIKKRFDILQKNALILIDDYAHHPTEISATLKSARIYANLLNTQEKIIVI 350
+ N+ L+F + + Q ++L H+PT I TL+ + A L + + +
Sbjct: 151 DAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLF 210
Query: 351 WQAHK-YSRLMDNLEEFKKCFSEHCDRLIILPVYS 384
A++ ++R ++ E + F+ LI+ YS
Sbjct: 211 DFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYS 245
>pdb|6ALD|A Chain A, Rabbit Muscle Aldolase AFRUCTOSE-1,6-Bisphosphate Complex
pdb|6ALD|B Chain B, Rabbit Muscle Aldolase AFRUCTOSE-1,6-Bisphosphate Complex
pdb|6ALD|C Chain C, Rabbit Muscle Aldolase AFRUCTOSE-1,6-Bisphosphate Complex
pdb|6ALD|D Chain D, Rabbit Muscle Aldolase AFRUCTOSE-1,6-Bisphosphate Complex
Length = 363
Score = 26.2 bits (56), Expect = 8.0
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 182 IVPNTEPEHLEHYGHDLERFFFAYEYFLDHAQKRV----IYKEDPFLK 225
IVP EPE L HDL+R + E L K + IY E LK
Sbjct: 182 IVPIVEPEILPDGDHDLKRCQYVTEKVLAAVYKALSDHHIYLEGTLLK 229
>pdb|1J4E|A Chain A, Fructose-1,6-Bisphosphate Aldolase Covalently Bound To The
Substrate Dihydroxyacetone Phosphate
pdb|1J4E|B Chain B, Fructose-1,6-Bisphosphate Aldolase Covalently Bound To The
Substrate Dihydroxyacetone Phosphate
pdb|1J4E|C Chain C, Fructose-1,6-Bisphosphate Aldolase Covalently Bound To The
Substrate Dihydroxyacetone Phosphate
pdb|1J4E|D Chain D, Fructose-1,6-Bisphosphate Aldolase Covalently Bound To The
Substrate Dihydroxyacetone Phosphate
Length = 363
Score = 26.2 bits (56), Expect = 8.0
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 182 IVPNTEPEHLEHYGHDLERFFFAYEYFLDHAQKRV----IYKEDPFLK 225
IVP EPE L HDL+R + E L K + IY E LK
Sbjct: 182 IVPIVEPEILPDGDHDLKRCQYVTEKVLAAVYKALSDHHIYLEGTLLK 229
>pdb|1ARS| Aspartate Aminotransferase (E.C.2.6.1.1) Complexed With
Pyridoxal-5'-Phosphate
pdb|1AMR| Aspartate Aminotransferase (E.C.2.6.1.1) Complexed With
Pyridoxamine 5'-Phosphate And Maleate
pdb|1ARG|A Chain A, Aspartate Aminotransferase, Phospho-5'-Pyridoxyl Aspartate
Complex
pdb|1ARG|B Chain B, Aspartate Aminotransferase, Phospho-5'-Pyridoxyl Aspartate
Complex
pdb|1ASD| Aspartate Aminotransferase (E.C.2.6.1.1) Wild Type Complexed With
N-Methyl-Pyridoxal-5'-Phosphate And Maleate
pdb|1AMQ| Aspartate Aminotransferase (E.C.2.6.1.1) Complexed With
Pyridoxamine 5'-Phosphate
pdb|1ASM|A Chain A, Aspartate Aminotransferase (E.C.2.6.1.1) (Wild Type,
Pyridoxal-5'-Phosphate Form) Complex With Maleate
pdb|1ASM|B Chain B, Aspartate Aminotransferase (E.C.2.6.1.1) (Wild Type,
Pyridoxal-5'-Phosphate Form) Complex With Maleate
pdb|1ASA| Aspartate Aminotransferase (E.C.2.6.1.1) Wild Type Complexed With
Pyridoxal-5'-Phosphate And Maleate
pdb|1AAW| Aspartate Aminotransferase (E.C.2.6.1.1) Wild Type Complex With
Pyridoxal-5'-Phosphate
pdb|1C9C|A Chain A, Aspartate Aminotransferase Complexed With C3-Pyridoxal-5'-
Phosphate
pdb|1CQ7|A Chain A, Aspartate Aminotransferase (E.C. 2.6.1.1) Complexed With
C5- Pyridoxal-5p-Phosphate
pdb|1CQ8|A Chain A, Aspartate Aminotransferase (E.C. 2.6.1.1) Complexed With
C6- Pyridoxal-5p-Phosphate
pdb|1ASN|A Chain A, Aspartate Aminotransferase (E.C.2.6.1.1) (Wild Type,
Pyridoxal-5'-Phosphate Form) Complex With Sulfate
pdb|1ASN|B Chain B, Aspartate Aminotransferase (E.C.2.6.1.1) (Wild Type,
Pyridoxal-5'-Phosphate Form) Complex With Sulfate
pdb|1ASE| Aspartate Aminotransferase (E.C.2.6.1.1) Wild Type Complexed With
Pyridoxal-5'-Phosphate-N-Oxide And Maleate
pdb|1ASL|A Chain A, Aspartate Aminotransferase (E.C.2.6.1.1) (Wild Type)
Complex With 2-Methylaspartyl-Pyridoxal-5'-Phosphate
pdb|1ASL|B Chain B, Aspartate Aminotransferase (E.C.2.6.1.1) (Wild Type)
Complex With 2-Methylaspartyl-Pyridoxal-5'-Phosphate
pdb|1AMS| Aspartate Aminotransferase (E.C.2.6.1.1) Complexed With
Pyridoxamine 5'-Phosphate And Glutarate
pdb|1CQ6|A Chain A, Aspartate Aminotransferase Complex With C4-Pyridoxal-5p-
Phosphate
Length = 396
Score = 26.2 bits (56), Expect = 8.0
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 291 EIRNNLLNFKGIKKRFDILQKNALILIDDYAHHPTEISATLKSARIYANLLNTQEKIIVI 350
+ N+ L+F + + Q ++L H+PT I TL+ + A L + + +
Sbjct: 151 DAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLF 210
Query: 351 WQAHK-YSRLMDNLEEFKKCFSEHCDRLIILPVYS 384
A++ ++R ++ E + F+ LI+ YS
Sbjct: 211 DFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYS 245
>pdb|1AIA|A Chain A, Aspartate Aminotransferase (E.C.2.6.1.1) (Holo Form)
Mutant With Lys 258 Replaced By His (K258h) Complexed
With Pyridoxamine-5'-Phosphate
pdb|1AIA|B Chain B, Aspartate Aminotransferase (E.C.2.6.1.1) (Holo Form)
Mutant With Lys 258 Replaced By His (K258h) Complexed
With Pyridoxamine-5'-Phosphate
pdb|1AIC|A Chain A, Aspartate Aminotransferase (E.C.2.6.1.1) Mutant With Lys
258 Replaced By His (K258h) Complexed With
Pyridoxamine-5'- Phosphate And Sulfate
pdb|1AIC|B Chain B, Aspartate Aminotransferase (E.C.2.6.1.1) Mutant With Lys
258 Replaced By His (K258h) Complexed With
Pyridoxamine-5'- Phosphate And Sulfate
pdb|1AIB|A Chain A, Aspartate Aminotransferase (E.C.2.6.1.1) Mutant With Lys
258 Replaced By His (K258h) Complexed With
Pyridoxamine-5'- Phosphate And 2-Oxo-Glutarate
pdb|1AIB|B Chain B, Aspartate Aminotransferase (E.C.2.6.1.1) Mutant With Lys
258 Replaced By His (K258h) Complexed With
Pyridoxamine-5'- Phosphate And 2-Oxo-Glutarate
Length = 396
Score = 26.2 bits (56), Expect = 8.0
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 291 EIRNNLLNFKGIKKRFDILQKNALILIDDYAHHPTEISATLKSARIYANLLNTQEKIIVI 350
+ N+ L+F + + Q ++L H+PT I TL+ + A L + + +
Sbjct: 151 DAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLF 210
Query: 351 WQAHK-YSRLMDNLEEFKKCFSEHCDRLIILPVYS 384
A++ ++R ++ E + F+ LI+ YS
Sbjct: 211 DFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYS 245
>pdb|1ART| Aspartate Aminotransferase (E.C.2.6.1.1) Complexed With
Pyridoxal-5'-Phosphate And 2-Methylaspartate
Length = 398
Score = 26.2 bits (56), Expect = 8.0
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 291 EIRNNLLNFKGIKKRFDILQKNALILIDDYAHHPTEISATLKSARIYANLLNTQEKIIVI 350
+ N+ L+F + + Q ++L H+PT I TL+ + A L + + +
Sbjct: 151 DAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLF 210
Query: 351 WQAHK-YSRLMDNLEEFKKCFSEHCDRLIILPVYS 384
A++ ++R ++ E + F+ LI+ YS
Sbjct: 211 DFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYS 245
>pdb|1CZE|A Chain A, Aspartate Aminotransferase Mutant Atb17139S142N WITH
Succinic Acid
pdb|1CZC|A Chain A, Aspartate Aminotransferase Mutant Atb17139S142N WITH
Glutaric Acid
Length = 396
Score = 26.2 bits (56), Expect = 8.0
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 291 EIRNNLLNFKGIKKRFDILQKNALILIDDYAHHPTEISATLKSARIYANLLNTQEKIIVI 350
+ N+ L+F + + Q ++L H+PT I TL+ + A L + + +
Sbjct: 151 DAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLF 210
Query: 351 WQAHK-YSRLMDNLEEFKKCFSEHCDRLIILPVYS 384
A++ ++R ++ E + F+ LI+ YS
Sbjct: 211 DFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYS 245
>pdb|1AAM| Aspartate Aminotransferase (E.C.2.6.1.1) Mutant With Arg 292
Replaced By Asp (R292d) Complex With
Pyridoxal-5'-Phosphate And Sulfate
Length = 396
Score = 26.2 bits (56), Expect = 8.0
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 291 EIRNNLLNFKGIKKRFDILQKNALILIDDYAHHPTEISATLKSARIYANLLNTQEKIIVI 350
+ N+ L+F + + Q ++L H+PT I TL+ + A L + + +
Sbjct: 151 DAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLF 210
Query: 351 WQAHK-YSRLMDNLEEFKKCFSEHCDRLIILPVYS 384
A++ ++R ++ E + F+ LI+ YS
Sbjct: 211 DFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYS 245
>pdb|5EAA|A Chain A, Aspartate Aminotransferase From E. Coli, C191s Mutation
pdb|1B4X|A Chain A, Aspartate Aminotransferase From E. Coli, C191s Mutation,
With Bound Maleate
Length = 396
Score = 26.2 bits (56), Expect = 8.0
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 291 EIRNNLLNFKGIKKRFDILQKNALILIDDYAHHPTEISATLKSARIYANLLNTQEKIIVI 350
+ N+ L+F + + Q ++L H+PT I TL+ + A L + + +
Sbjct: 151 DAENHTLDFDALINSLNEAQAGDVVLFHGSCHNPTGIDPTLEQWQTLAQLSVEKGWLPLF 210
Query: 351 WQAHK-YSRLMDNLEEFKKCFSEHCDRLIILPVYS 384
A++ ++R ++ E + F+ LI+ YS
Sbjct: 211 DFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYS 245
>pdb|1ADO|A Chain A, Fructose 1,6-Bisphosphate Aldolase From Rabbit Muscle
pdb|1ADO|B Chain B, Fructose 1,6-Bisphosphate Aldolase From Rabbit Muscle
pdb|1ADO|C Chain C, Fructose 1,6-Bisphosphate Aldolase From Rabbit Muscle
pdb|1ADO|D Chain D, Fructose 1,6-Bisphosphate Aldolase From Rabbit Muscle
Length = 363
Score = 26.2 bits (56), Expect = 8.0
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 182 IVPNTEPEHLEHYGHDLERFFFAYEYFLDHAQKRV----IYKEDPFLK 225
IVP EPE L HDL+R + E L K + IY E LK
Sbjct: 182 IVPIVEPEILPDGDHDLKRCQYVTEKVLAAVYKALSDHHIYLEGTLLK 229
>pdb|1IX6|A Chain A, Aspartate Aminotransferase Active Site Mutant V39f
pdb|1IX7|A Chain A, Aspartate Aminotransferase Active Site Mutant V39f Maleate
Complex
Length = 396
Score = 26.2 bits (56), Expect = 8.0
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 291 EIRNNLLNFKGIKKRFDILQKNALILIDDYAHHPTEISATLKSARIYANLLNTQEKIIVI 350
+ N+ L+F + + Q ++L H+PT I TL+ + A L + + +
Sbjct: 151 DAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLF 210
Query: 351 WQAHK-YSRLMDNLEEFKKCFSEHCDRLIILPVYS 384
A++ ++R ++ E + F+ LI+ YS
Sbjct: 211 DFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYS 245
>pdb|1ALD| Aldolase A (E.C.4.1.2.13)
pdb|2ALD|A Chain A, Human Muscle Aldolase
pdb|4ALD| Human Muscle Fructose 1,6-Bisphosphate Aldolase Complexed With
Fructose 1,6-Bisphosphate
Length = 363
Score = 26.2 bits (56), Expect = 8.0
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 182 IVPNTEPEHLEHYGHDLERFFFAYEYFLDHAQKRV----IYKEDPFLK 225
IVP EPE L HDL+R + E L K + IY E LK
Sbjct: 182 IVPIVEPEILPDGDHDLKRCQYVTEKVLAAVYKALSDHHIYLEGTLLK 229
>pdb|3AAT| Aspartate Aminotransferase (E.C.2.6.1.1) (Mutant With Arg 386
Replaced By Phe) (R386F) Complex With
Pyridoxal-5'-Phosphate And Sulfate
Length = 396
Score = 26.2 bits (56), Expect = 8.0
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 291 EIRNNLLNFKGIKKRFDILQKNALILIDDYAHHPTEISATLKSARIYANLLNTQEKIIVI 350
+ N+ L+F + + Q ++L H+PT I TL+ + A L + + +
Sbjct: 151 DAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLF 210
Query: 351 WQAHK-YSRLMDNLEEFKKCFSEHCDRLIILPVYS 384
A++ ++R ++ E + F+ LI+ YS
Sbjct: 211 DFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYS 245
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.139 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,598,991
Number of Sequences: 13198
Number of extensions: 111213
Number of successful extensions: 379
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 367
Number of HSP's gapped (non-prelim): 32
length of query: 449
length of database: 2,899,336
effective HSP length: 91
effective length of query: 358
effective length of database: 1,698,318
effective search space: 607997844
effective search space used: 607997844
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)