BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645251|ref|NP_207421.1| hypothetical protein
[Helicobacter pylori 26695]
(110 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1PKL|G Chain G, The Structure Of Leishmania Pyruvate Ki... 25 1.2
pdb|1HBN|C Chain C, Methyl-Coenzyme M Reductase >gi|1582679... 23 3.6
pdb|1MRO|C Chain C, Methyl-Coenzyme M Reductase >gi|3891383... 23 3.6
pdb|1LLP| Lignin Peroxidase (Isozyme H2) Pi4.15 >gi|44309... 23 4.7
pdb|1GW5|B Chain B, Ap2 Clathrin Adaptor Core 23 4.7
pdb|1G9L|A Chain A, Solution Structure Of The Pabc Domain O... 22 8.0
pdb|1JOE|A Chain A, Crystal Structure Of Autoinducer-2 Prod... 22 8.0
>pdb|1PKL|G Chain G, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|D Chain D, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|E Chain E, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|C Chain C, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|H Chain H, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|A Chain A, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|F Chain F, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|B Chain B, The Structure Of Leishmania Pyruvate Kinase
Length = 499
Score = 25.0 bits (53), Expect = 1.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 59 DKLGSPENAQTELSAGIDLAKKGDY 83
DKLG E + ++AG++ AK Y
Sbjct: 446 DKLGHDEGKEHRVAAGVEFAKSKGY 470
>pdb|1HBN|C Chain C, Methyl-Coenzyme M Reductase
pdb|1HBN|F Chain F, Methyl-Coenzyme M Reductase
pdb|1HBO|C Chain C, Methyl-Coenzyme M Reductase Mcr-Red1-Silent
pdb|1HBO|F Chain F, Methyl-Coenzyme M Reductase Mcr-Red1-Silent
pdb|1HBM|C Chain C, Methyl-Coenzyme M Reductase Enzyme Product Complex
pdb|1HBM|F Chain F, Methyl-Coenzyme M Reductase Enzyme Product Complex
pdb|1HBU|C Chain C, Methyl-Coenzyme M Reductase In The Mcr-Red1-Silent State
In Complex With Coenzyme M
pdb|1HBU|F Chain F, Methyl-Coenzyme M Reductase In The Mcr-Red1-Silent State
In Complex With Coenzyme M
Length = 248
Score = 23.5 bits (49), Expect = 3.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 58 LDKLGSPENAQTELSAGIDLAKKGD 82
L+++ PE+A E+ ID AK GD
Sbjct: 55 LEEMDEPEDAIREMVEPIDGAKAGD 79
>pdb|1MRO|C Chain C, Methyl-Coenzyme M Reductase
pdb|1MRO|F Chain F, Methyl-Coenzyme M Reductase
Length = 247
Score = 23.5 bits (49), Expect = 3.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 58 LDKLGSPENAQTELSAGIDLAKKGD 82
L+++ PE+A E+ ID AK GD
Sbjct: 55 LEEMDEPEDAIREMVEPIDGAKAGD 79
>pdb|1LLP| Lignin Peroxidase (Isozyme H2) Pi4.15
pdb|1LGA|A Chain A, Lignin Peroxidase (Lip) (E.C.1.11.1.-) (Ferric)
pdb|1LGA|B Chain B, Lignin Peroxidase (Lip) (E.C.1.11.1.-) (Ferric)
Length = 343
Score = 23.1 bits (48), Expect = 4.7
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 58 LDKLGSPENAQTELSAGIDLAKKGDYQGAFKLF 90
L +LG NA T+ S I L+K G F F
Sbjct: 272 LTQLGQDPNAMTDCSDVIPLSKPIPGNGPFSFF 304
>pdb|1GW5|B Chain B, Ap2 Clathrin Adaptor Core
Length = 591
Score = 23.1 bits (48), Expect = 4.7
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 34 NPANAKGAPNSNTQITPKNDNSNLLDKLGSPENAQTELSA 73
NP A + ++I+ + NSNLLD +P+N L+A
Sbjct: 173 NPMVVANAVAALSEISESHPNSNLLDL--NPQNINKLLTA 210
>pdb|1G9L|A Chain A, Solution Structure Of The Pabc Domain Of Human Poly(A)
Binding Protein
Length = 144
Score = 22.3 bits (46), Expect = 8.0
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 53 DNSNLLDKLGSPENAQTELSAGI 75
DNS LL L SPE+ ++++ +
Sbjct: 97 DNSELLHMLESPESLRSKVDEAV 119
>pdb|1JOE|A Chain A, Crystal Structure Of Autoinducer-2 Production Protein
(Luxs) From Heamophilus Influenzae
pdb|1JOE|B Chain B, Crystal Structure Of Autoinducer-2 Production Protein
(Luxs) From Heamophilus Influenzae
pdb|1JOE|C Chain C, Crystal Structure Of Autoinducer-2 Production Protein
(Luxs) From Heamophilus Influenzae
pdb|1JOE|D Chain D, Crystal Structure Of Autoinducer-2 Production Protein
(Luxs) From Heamophilus Influenzae
Length = 167
Score = 22.3 bits (46), Expect = 8.0
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 37 NAKGAPNSNTQITPKNDNSNLLD 59
NA + T +TPK DN + D
Sbjct: 15 NAPAVRIAKTMLTPKGDNITVFD 37
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.309 0.129 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 679,819
Number of Sequences: 13198
Number of extensions: 26792
Number of successful extensions: 34
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 7
length of query: 110
length of database: 2,899,336
effective HSP length: 86
effective length of query: 24
effective length of database: 1,764,308
effective search space: 42343392
effective search space used: 42343392
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 46 (22.3 bits)