BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644694|ref|NP_206864.1| hypothetical protein
[Helicobacter pylori 26695]
(139 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|2FIV|A Chain A, Crystal Structure Of Feline Immunodefic... 26 1.9
pdb|3FIV|A Chain A, Crystal Structure Of Feline Immunodefic... 26 1.9
pdb|1G59|A Chain A, Glutamyl-Trna Synthetase Complexed With... 24 7.3
pdb|1M7X|A Chain A, The X-Ray Crystallographic Structure Of... 24 7.3
pdb|6FIV|A Chain A, Structural Studies Of Hiv And Fiv Prote... 24 7.3
pdb|5FIV|A Chain A, Structural Studies Of Hiv And Fiv Prote... 24 7.3
pdb|1B11|A Chain A, Structure Of Feline Immunodeficiency Vi... 24 7.3
pdb|2PLC| Phosphatidylinositol-Specific Phospholipase C F... 23 9.5
pdb|1AOD| Phosphatidylinositol-Specific Phospholipase C F... 23 9.5
pdb|1E5D|A Chain A, Rubredoxin Oxygen:oxidoreductase (Roo) ... 23 9.5
>pdb|2FIV|A Chain A, Crystal Structure Of Feline Immunodeficiency Virus
Protease Complexed With A Substrate
pdb|2FIV|B Chain B, Crystal Structure Of Feline Immunodeficiency Virus
Protease Complexed With A Substrate
Length = 116
Score = 25.8 bits (55), Expect = 1.9
Identities = 14/37 (37%), Positives = 21/37 (55%), Gaps = 1/37 (2%)
Query: 89 PEEIIFANDGYGGYYLLNTATDVVLFLDTDDGSKHAL 125
PE +IF N GY +LLNT D+ + D K+++
Sbjct: 14 PEILIFVN-GYPIKFLLNTGADITILNRRDFQVKNSI 49
>pdb|3FIV|A Chain A, Crystal Structure Of Feline Immunodeficiency Virus
Protease Complexed With A Substrate
pdb|3FIV|B Chain B, Crystal Structure Of Feline Immunodeficiency Virus
Protease Complexed With A Substrate
Length = 116
Score = 25.8 bits (55), Expect = 1.9
Identities = 14/37 (37%), Positives = 21/37 (55%), Gaps = 1/37 (2%)
Query: 89 PEEIIFANDGYGGYYLLNTATDVVLFLDTDDGSKHAL 125
PE +IF N GY +LLNT D+ + D K+++
Sbjct: 14 PEILIFVN-GYPIKFLLNTGADITILNRRDFQVKNSI 49
>pdb|1G59|A Chain A, Glutamyl-Trna Synthetase Complexed With Trna(Glu).
pdb|1G59|C Chain C, Glutamyl-Trna Synthetase Complexed With Trna(Glu).
pdb|1GLN| Mol_id: 1; Molecule: Glutamyl-Trna Synthetase; Chain: Null
Length = 468
Score = 23.9 bits (50), Expect = 7.3
Identities = 8/22 (36%), Positives = 13/22 (58%)
Query: 89 PEEIIFANDGYGGYYLLNTATD 110
P+ ++ +DGY Y+L N D
Sbjct: 174 PDVVLLKSDGYPTYHLANVVDD 195
>pdb|1M7X|A Chain A, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|B Chain B, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|C Chain C, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|D Chain D, The X-Ray Crystallographic Structure Of Branching Enzyme
Length = 617
Score = 23.9 bits (50), Expect = 7.3
Identities = 12/38 (31%), Positives = 21/38 (54%), Gaps = 3/38 (7%)
Query: 46 NYGFSQWRSFVVGNKSYTFKHVLNFNLEGLFIDFMQSL 83
NYG + +F+VGN Y + F ++ L +D + S+
Sbjct: 265 NYGRREVSNFLVGNALYWIE---RFGIDALRVDAVASM 299
>pdb|6FIV|A Chain A, Structural Studies Of Hiv And Fiv Proteases Complexed With
An Efficient Inhibitor Of Fiv Pr
Length = 113
Score = 23.9 bits (50), Expect = 7.3
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 89 PEEIIFANDGYGGYYLLNTATDVVLFLDTDDGSKHAL 125
PE +IF N GY +LL+T D+ + D K+++
Sbjct: 11 PEILIFVN-GYPIKFLLDTGADITILNRRDFQVKNSI 46
>pdb|5FIV|A Chain A, Structural Studies Of Hiv And Fiv Proteases Complexed With
An Efficient Inhibitor Of Fiv Pr
Length = 113
Score = 23.9 bits (50), Expect = 7.3
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 89 PEEIIFANDGYGGYYLLNTATDVVLFLDTDDGSKHAL 125
PE +IF N GY +LL+T D+ + D K+++
Sbjct: 11 PEILIFVN-GYPIKFLLDTGADITILNRRDFQVKNSI 46
>pdb|1B11|A Chain A, Structure Of Feline Immunodeficiency Virus Protease
Complexed With Tl-3-093
pdb|1FIV|A Chain A, Molecule: Feline Immunodeficiency Virus Protease; Ec:
3.4.23.16
pdb|4FIV| Fiv Protease Complexed With An Inhibitor Lp-130
Length = 113
Score = 23.9 bits (50), Expect = 7.3
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 89 PEEIIFANDGYGGYYLLNTATDVVLFLDTDDGSKHAL 125
PE +IF N GY +LL+T D+ + D K+++
Sbjct: 11 PEILIFVN-GYPIKFLLDTGADITILNRRDFQVKNSI 46
>pdb|2PLC| Phosphatidylinositol-Specific Phospholipase C From Listeria
Monocytogenes
Length = 274
Score = 23.5 bits (49), Expect = 9.5
Identities = 21/92 (22%), Positives = 36/92 (38%), Gaps = 16/92 (17%)
Query: 2 ETIPANSELNWEFVEPLNEKALSGLEERLKIGFSDAFKDFVKRSNYGFSQWRSFVVGNKS 61
+T+ N ++ W +PL + L ++L+ G + D + N F
Sbjct: 26 DTMSYNGDITWTLTKPLAQTQTMSLYQQLEAGI--RYIDIRAKDNLNIYHGPIF------ 77
Query: 62 YTFKHVLNFNLEGLFIDFMQSLKEWLEPEEII 93
LN +L G+ Q LK+ P+E I
Sbjct: 78 ------LNASLSGVLETITQFLKK--NPKETI 101
>pdb|1AOD| Phosphatidylinositol-Specific Phospholipase C From Listeria
Monocytogenes
Length = 289
Score = 23.5 bits (49), Expect = 9.5
Identities = 21/92 (22%), Positives = 36/92 (38%), Gaps = 16/92 (17%)
Query: 2 ETIPANSELNWEFVEPLNEKALSGLEERLKIGFSDAFKDFVKRSNYGFSQWRSFVVGNKS 61
+T+ N ++ W +PL + L ++L+ G + D + N F
Sbjct: 40 DTMSYNGDITWTLTKPLAQTQTMSLYQQLEAGI--RYIDIRAKDNLNIYHGPIF------ 91
Query: 62 YTFKHVLNFNLEGLFIDFMQSLKEWLEPEEII 93
LN +L G+ Q LK+ P+E I
Sbjct: 92 ------LNASLSGVLETITQFLKK--NPKETI 115
>pdb|1E5D|A Chain A, Rubredoxin Oxygen:oxidoreductase (Roo) From Anaerobe
Desulfovibrio Gigas
pdb|1E5D|B Chain B, Rubredoxin Oxygen:oxidoreductase (Roo) From Anaerobe
Desulfovibrio Gigas
Length = 402
Score = 23.5 bits (49), Expect = 9.5
Identities = 15/69 (21%), Positives = 29/69 (41%), Gaps = 3/69 (4%)
Query: 34 FSDAFKDFVKRSNYGFSQWRSFVV--GNKSYTFKHVLNFNLEGLFIDFMQSLKEWLEPEE 91
F+ + S++ + W VV G K + F E + + S+ W E+
Sbjct: 101 FTSSLGQKAMESHFHYKDWPVQVVKHGETLSLGKRTVTF-YETRMLHWPDSMVSWFADEK 159
Query: 92 IIFANDGYG 100
++ +ND +G
Sbjct: 160 VLISNDIFG 168
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.140 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 900,252
Number of Sequences: 13198
Number of extensions: 37707
Number of successful extensions: 100
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 99
Number of HSP's gapped (non-prelim): 10
length of query: 139
length of database: 2,899,336
effective HSP length: 79
effective length of query: 60
effective length of database: 1,856,694
effective search space: 111401640
effective search space used: 111401640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)