BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645252|ref|NP_207422.1| hypothetical protein
[Helicobacter pylori 26695]
         (225 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1KLX|A  Chain A, Helicobacter Pylori Cysteine Rich Prote...    64  2e-11
pdb|1FVP|A  Chain A, Flavoprotein 390 >gi|1311361|pdb|1FVP|B...    27  1.9
pdb|1QFX|B  Chain B, Ph 2.5 Acid Phosphatase From Aspergillu...    25  5.6

>pdb|1KLX|A Chain A, Helicobacter Pylori Cysteine Rich Protein B (Hcpb)
          Length = 138

 Score = 63.5 bits (153), Expect = 2e-11
 Identities = 51/146 (34%), Positives = 66/146 (44%), Gaps = 13/146 (8%)

Query: 58  GSGVPKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYL--ACN 115
           G  V KD  KAI YY  +CE     GC  L L+SN      I+K +L Q    YL  AC 
Sbjct: 4   GGTVKKDLKKAIQYYVKACELNEMFGC--LSLVSNSQ----INKQKLFQ----YLSKACE 53

Query: 116 AGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQD 175
                GC  LG  Y NG      +   AA+Y+  AC       C  LG     G GV ++
Sbjct: 54  LNSGNGCRFLGDFYENGKY-VKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKN 112

Query: 176 DQRALDLFSYACDNGFESSCRNYGNF 201
           +++A+  F  AC  G E +C    N+
Sbjct: 113 EKQAVKTFEKACRLGSEDACGILNNY 138



 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 39/135 (28%), Positives = 53/135 (38%), Gaps = 9/135 (6%)

Query: 28  DKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCYNL 87
           D + A+Q Y  AC+  +M  C +L     + S + K   K   Y   +CE  +  GC  L
Sbjct: 10  DLKKAIQYYVKACELNEMFGCLSL----VSNSQINKQ--KLFQYLSKACELNSGNGCRFL 63

Query: 88  GLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYF 147
           G           D  + +Q      AC   D  GC  LG+    G  G   N   A K F
Sbjct: 64  GDFYENGKYVKKDLRKAAQYYSK--ACGLNDQDGCLILGYKQYAGK-GVVKNEKQAVKTF 120

Query: 148 QMACDGGILGSCNNL 162
           + AC  G   +C  L
Sbjct: 121 EKACRLGSEDACGIL 135



>pdb|1FVP|A Chain A, Flavoprotein 390
 pdb|1FVP|B Chain B, Flavoprotein 390
          Length = 231

 Score = 26.9 bits (58), Expect = 1.9
 Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 14/113 (12%)

Query: 13  NLAQMYENKKNADSNDKENAL------QLYAVACQGG--DMLACNNLGWMFANGSGVPKD 64
           N+   Y  KK  DS DK+ A       +LY +A      D+ A   L  +F     + ++
Sbjct: 46  NIDDHYLVKK--DSEDKKLAPFITLGEKLYVLATSENTVDIAAKYALPLVF-KWDDINEE 102

Query: 65  YYKAISYYKFSCENGN---DMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLAC 114
             K +S+Y  S    N   D+  + L L  NVN    + K +L     NY+AC
Sbjct: 103 RLKLLSFYNASASKYNKNIDLVRHQLMLHVNVNEAETVAKEELKLYIENYVAC 155



>pdb|1QFX|B Chain B, Ph 2.5 Acid Phosphatase From Aspergillus Niger
 pdb|1QFX|A Chain A, Ph 2.5 Acid Phosphatase From Aspergillus Niger
          Length = 460

 Score = 25.4 bits (54), Expect = 5.6
 Identities = 23/72 (31%), Positives = 29/72 (39%), Gaps = 10/72 (13%)

Query: 108 DLNYLACNAGDMMGCANLGWIYANGDLGAPLN---NHYAAKYFQMACDGGILGSCNNLGV 164
           DLNY  C        A +G +YAN  L   LN       + +F  A D  I      LGV
Sbjct: 273 DLNYYYCAGPGDKNMAAVGAVYANASL-TLLNQGPKEAGSLFFNFAHDTNITPILAALGV 331

Query: 165 LYQKGLGVPQDD 176
           L      +P +D
Sbjct: 332 L------IPNED 337



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.319    0.138    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,560,131
Number of Sequences: 13198
Number of extensions: 71771
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 100
Number of HSP's gapped (non-prelim): 6
length of query: 225
length of database: 2,899,336
effective HSP length: 85
effective length of query: 140
effective length of database: 1,777,506
effective search space: 248850840
effective search space used: 248850840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)