BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645253|ref|NP_207423.1| hypothetical protein
[Helicobacter pylori 26695]
(681 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1AIP|C Chain C, Ef-Tu Ef-Ts Complex From Thermus Thermo... 30 0.88
pdb|1TFE| Dimerization Domain Of Ef-Ts From T. Thermophilus 30 0.88
pdb|1M2V|B Chain B, Crystal Structure Of The Yeast Sec2324 ... 28 3.3
pdb|1FPS| Avian Farnesyl Diphosphate Synthase (Fps) (E.C.... 28 4.4
pdb|1UBX| Structure Of Farnesyl Pyrophosphate Synthetase 28 4.4
pdb|1LFW|A Chain A, Crystal Structure Of Pepv 27 5.7
pdb|1HY3|A Chain A, Crystal Structure Of Human Estrogen Sul... 27 5.7
pdb|1UBY| Structure Of Farnesyl Pyrophosphate Synthetase ... 27 5.7
pdb|1ORD|A Chain A, Mol_id: 1; Molecule: Ornithine Decarbox... 27 7.4
pdb|1C4K|A Chain A, Ornithine Decarboxylase Mutant (Gly121tyr) 27 7.4
pdb|1M1X|B Chain B, Crystal Structure Of The Extracellular ... 27 9.7
pdb|1QDL|A Chain A, The Crystal Structure Of Anthranilate S... 27 9.7
>pdb|1AIP|C Chain C, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|G Chain G, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|H Chain H, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|D Chain D, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 196
Score = 30.0 bits (66), Expect = 0.88
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 12/103 (11%)
Query: 340 LRCARDFEEGKLDYENFYEILQILISYFVRRSVCGESTPT----LTRVLY-------SLY 388
L C DF ++N + L + I+ R V E P R +Y
Sbjct: 76 LNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYIQAALNEGKP 135
Query: 389 RQLEEDVSADALKRYLGKSVG-QMAFPNDDKIKAAFLVRNAYA 430
+Q+ E ++ LK+YL + V + F DDK+K L++ A A
Sbjct: 136 QQIAEKIAEGRLKKYLEEVVLLEQPFVKDDKVKVKELIQQAIA 178
>pdb|1TFE| Dimerization Domain Of Ef-Ts From T. Thermophilus
Length = 145
Score = 30.0 bits (66), Expect = 0.88
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 12/103 (11%)
Query: 340 LRCARDFEEGKLDYENFYEILQILISYFVRRSVCGESTPT----LTRVLY-------SLY 388
L C DF ++N + L + I+ R V E P R +Y
Sbjct: 22 LNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYIQAALNEGKP 81
Query: 389 RQLEEDVSADALKRYLGKSVG-QMAFPNDDKIKAAFLVRNAYA 430
+Q+ E ++ LK+YL + V + F DDK+K L++ A A
Sbjct: 82 QQIAEKIAEGRLKKYLEEVVLLEQPFVKDDKVKVKELIQQAIA 124
>pdb|1M2V|B Chain B, Crystal Structure Of The Yeast Sec2324 HETERODIMER
Length = 926
Score = 28.1 bits (61), Expect = 3.3
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 22/98 (22%)
Query: 573 LTSHN-LQSVKLPNHQRKIARNAKELASAVIDYLLENAREAFESYTDEEPRYICWDKAKA 631
LT H +S +P+ R A N L S + YL++N Y D + D+A
Sbjct: 717 LTKHMAFRSGIVPSDHRASALN--NLESLPLKYLIKNI------YPDVYSLHDMADEAGL 768
Query: 632 QLRDRDG----TLVVP---------FEKYGFYFVSNAS 656
++ DG T+V+P FE+YG Y + N +
Sbjct: 769 PVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGN 806
>pdb|1FPS| Avian Farnesyl Diphosphate Synthase (Fps) (E.C.2.5.1.10)
Length = 348
Score = 27.7 bits (60), Expect = 4.4
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 474 VGDYFTFEQDYLNNFGNLTLSGQ 496
+G+YF + DYL+ FG+ L+G+
Sbjct: 230 MGEYFQIQDDYLDCFGDPALTGK 252
>pdb|1UBX| Structure Of Farnesyl Pyrophosphate Synthetase
Length = 367
Score = 27.7 bits (60), Expect = 4.4
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 474 VGDYFTFEQDYLNNFGNLTLSGQ 496
+G+YF + DYL+ FG+ L+G+
Sbjct: 249 MGEYFQIQDDYLDCFGDPALTGK 271
>pdb|1LFW|A Chain A, Crystal Structure Of Pepv
Length = 470
Score = 27.3 bits (59), Expect = 5.7
Identities = 24/93 (25%), Positives = 41/93 (43%)
Query: 45 ISQNKKTHFMGSITYILHWIDDEKSLRKLQEFVIIDGQQRITTLMLLLKAIETKIPNEEV 104
+ N++T+++G Y+ H + E+ II+G+Q I TL K +TK
Sbjct: 149 LGTNEETNWVGIDYYLKHEPTPDIVFSPDAEYPIINGEQGIFTLEFSFKNDDTKGDYVLD 208
Query: 105 KKEIDNLLNLSGQKLRLKPIKSDKEAFDLVMQN 137
K + N++ Q R D EA L ++
Sbjct: 209 KFKAGIATNVTPQVTRATISGPDLEAVKLAYES 241
>pdb|1HY3|A Chain A, Crystal Structure Of Human Estrogen Sulfotransferase V269e
Mutant In The Presence Of Paps
pdb|1HY3|B Chain B, Crystal Structure Of Human Estrogen Sulfotransferase V269e
Mutant In The Presence Of Paps
Length = 294
Score = 27.3 bits (59), Expect = 5.7
Identities = 17/55 (30%), Positives = 30/55 (53%), Gaps = 3/55 (5%)
Query: 449 EPPREENLEVEHFYPKTPTQEWRDRVGDYFTFEQDYLN---NFGNLTLSGQNQKL 500
E R+E +++ HF + P++E DR+ + +F++ N N+ L NQKL
Sbjct: 197 EDIRKEVIKLIHFLERKPSEELVDRIIHHTSFQEMKNNPSTNYTTLPDEIMNQKL 251
>pdb|1UBY| Structure Of Farnesyl Pyrophosphate Synthetase
pdb|1UBW| Structure Of Farnesyl Pyrophosphate Synthetase
pdb|1UBV| Structure Of Farnesyl Pyrophosphate Synthetase
Length = 367
Score = 27.3 bits (59), Expect = 5.7
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 474 VGDYFTFEQDYLNNFGNLTLSG 495
+G+YF + DYL+ FG+ L+G
Sbjct: 249 MGEYFQIQDDYLDCFGDPALTG 270
>pdb|1ORD|A Chain A, Mol_id: 1; Molecule: Ornithine Decarboxylase; Chain: A, B;
Ec: 4.1.1.17
pdb|1ORD|B Chain B, Mol_id: 1; Molecule: Ornithine Decarboxylase; Chain: A, B;
Ec: 4.1.1.17
Length = 730
Score = 26.9 bits (58), Expect = 7.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 466 PTQEWRDRVGDYFTFEQDYLNNF 488
P ++W + YFT QD +NNF
Sbjct: 669 PGEKWSETAVKYFTILQDGINNF 691
>pdb|1C4K|A Chain A, Ornithine Decarboxylase Mutant (Gly121tyr)
Length = 730
Score = 26.9 bits (58), Expect = 7.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 466 PTQEWRDRVGDYFTFEQDYLNNF 488
P ++W + YFT QD +NNF
Sbjct: 669 PGEKWSETAVKYFTILQDGINNF 691
>pdb|1M1X|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Alpha Vbeta3 Bound To Mn2+
pdb|1JV2|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Alphavbeta3
pdb|1L5G|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Avb3 In Complex With An Arg-Gly-Asp Ligand
Length = 692
Score = 26.6 bits (57), Expect = 9.7
Identities = 21/73 (28%), Positives = 33/73 (44%), Gaps = 6/73 (8%)
Query: 549 QVGLFKDLPKE-YRTREISKTLDDDLTSHNLQSVKLPNHQRKIARNAKELASAVID---- 603
QV +D P + Y ++S ++ DDL S KL RK+ N + A +D
Sbjct: 103 QVRQVEDYPVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVS 162
Query: 604 -YLLENAREAFES 615
Y+ + EA E+
Sbjct: 163 PYMYISPPEALEN 175
>pdb|1QDL|A Chain A, The Crystal Structure Of Anthranilate Synthase From
Sulfolobus Solfataricus
Length = 422
Score = 26.6 bits (57), Expect = 9.7
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 282 NDIQGLMSDMREY---GRIYQIFLDRDHYFLHHGDPQQL-ANLR 321
N + ++S+ EY G I+Q+ L R + ++ GDP ++ NLR
Sbjct: 159 NSYERIVSESLEYIRSGYIFQVVLSRFYRYIFSGDPLRIYYNLR 202
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.139 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,043,651
Number of Sequences: 13198
Number of extensions: 178680
Number of successful extensions: 449
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 443
Number of HSP's gapped (non-prelim): 13
length of query: 681
length of database: 2,899,336
effective HSP length: 95
effective length of query: 586
effective length of database: 1,645,526
effective search space: 964278236
effective search space used: 964278236
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)