BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645254|ref|NP_207424.1| modulator of drug activity
(mda66) [Helicobacter pylori 26695]
(194 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1QR2|A Chain A, Human Quinone Reductase Type 2 >gi|5822... 39 3e-04
pdb|1QRD|A Chain A, Quinone ReductaseFADCIBACRON BLUEDUROQU... 39 4e-04
pdb|1DXQ|A Chain A, Crystal Structure Of Mouse Nad[p]h-Quin... 35 0.004
pdb|1QBG|A Chain A, Crystal Structure Of Human Dt-Diaphoras... 33 0.017
pdb|1H69|A Chain A, Crystal Structure Of Human Nad[p]h-Quin... 33 0.017
pdb|1KBO|A Chain A, Complex Of Human Recombinant Nad(P)h:qu... 33 0.017
pdb|1KF0|A Chain A, Crystal Structure Of Pig Muscle Phospho... 33 0.028
pdb|1J5U|A Chain A, Crystal Structure Of Conserved Hypothet... 29 0.41
pdb|2MPR|A Chain A, Maltoporin From Salmonella Typhimurium ... 27 1.5
pdb|1B43|A Chain A, Fen-1 From P. Furiosus >gi|6980605|pdb|... 26 2.6
pdb|1EP3|A Chain A, Crystal Structure Of Lactococcus Lactis... 26 2.6
pdb|1MC8|A Chain A, Crystal Structure Of Flap Endonuclease-... 25 4.5
pdb|1B06|A Chain A, Superoxide Dismutase From Sulfolobus Ac... 25 4.5
pdb|1KTJ|A Chain A, X-Ray Structure Of Der P 2, The Major H... 25 5.9
pdb|1A9V| Tertiary Structure Of The Major House Dust Mite... 25 5.9
pdb|1EI9|A Chain A, Crystal Structure Of Palmitoyl Protein ... 25 7.7
pdb|1H2I|A Chain A, Human Rad52 Protein, N-Terminal Domain ... 25 7.7
pdb|1KN0|A Chain A, Crystal Structure Of The Human Rad52 Pr... 25 7.7
pdb|1AF6|A Chain A, Maltoporin Sucrose Complex >gi|3114532|... 25 7.7
>pdb|1QR2|A Chain A, Human Quinone Reductase Type 2
pdb|1QR2|B Chain B, Human Quinone Reductase Type 2
pdb|2QR2|A Chain A, Human Quinone Reductase Type 2, Complex With Menadione
pdb|2QR2|B Chain B, Human Quinone Reductase Type 2, Complex With Menadione
Length = 230
Score = 39.3 bits (90), Expect = 3e-04
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 16/92 (17%)
Query: 53 EVEKVFSADATIWQMPGWWMGEPWIVKKYIDEVFSVGHGKLYASDGRSSQNPTKNYGKGG 112
E +KV AD I+Q P +W P I+K ++D V G +A D + G
Sbjct: 87 EQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQG----FAFD-------IPGFYDSG 135
Query: 113 LMQGKKYMLSLTWNAPIEAF-----NDPSEFF 139
L+QGK +LS+T E + N S +F
Sbjct: 136 LLQGKLALLSVTTGGTAEMYTKTGVNGDSRYF 167
>pdb|1QRD|A Chain A, Quinone ReductaseFADCIBACRON BLUEDUROQUINONE COMPLEX
pdb|1QRD|B Chain B, Quinone ReductaseFADCIBACRON BLUEDUROQUINONE COMPLEX
Length = 273
Score = 38.9 bits (89), Expect = 4e-04
Identities = 25/72 (34%), Positives = 36/72 (49%), Gaps = 11/72 (15%)
Query: 53 EVEKVFSADATIWQMPGWWMGEPWIVKKYIDEVFSVGHGKLYASDGRSSQNPTKNYGKGG 112
E +K+ +AD I+Q P +W G P I+K + + V G YA+ Y KG
Sbjct: 87 EQKKLEAADLVIFQFPLYWFGVPAILKGWFERVLVAGFAYTYAT----------MYDKGP 136
Query: 113 LMQGKKYMLSLT 124
Q KK +LS+T
Sbjct: 137 -FQNKKTLLSIT 147
>pdb|1DXQ|A Chain A, Crystal Structure Of Mouse Nad[p]h-Quinone Oxidoreductase
pdb|1DXQ|B Chain B, Crystal Structure Of Mouse Nad[p]h-Quinone Oxidoreductase
pdb|1DXQ|C Chain C, Crystal Structure Of Mouse Nad[p]h-Quinone Oxidoreductase
pdb|1DXQ|D Chain D, Crystal Structure Of Mouse Nad[p]h-Quinone Oxidoreductase
Length = 273
Score = 35.4 bits (80), Expect = 0.004
Identities = 23/72 (31%), Positives = 33/72 (44%), Gaps = 11/72 (15%)
Query: 53 EVEKVFSADATIWQMPGWWMGEPWIVKKYIDEVFSVGHGKLYASDGRSSQNPTKNYGKGG 112
E +K+ +AD I+Q P W G P I+K + + V G YA+ G
Sbjct: 87 EHKKLEAADLVIFQFPLQWFGVPAILKGWFERVLVAGFAYTYAA-----------MYDNG 135
Query: 113 LMQGKKYMLSLT 124
Q KK +LS+T
Sbjct: 136 PFQNKKTLLSIT 147
>pdb|1QBG|A Chain A, Crystal Structure Of Human Dt-Diaphorase (Nad(P)h
Oxidoreductase)
pdb|1QBG|C Chain C, Crystal Structure Of Human Dt-Diaphorase (Nad(P)h
Oxidoreductase)
pdb|1QBG|D Chain D, Crystal Structure Of Human Dt-Diaphorase (Nad(P)h
Oxidoreductase)
pdb|1QBG|B Chain B, Crystal Structure Of Human Dt-Diaphorase (Nad(P)h
Oxidoreductase)
Length = 272
Score = 33.5 bits (75), Expect = 0.017
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Query: 53 EVEKVFSADATIWQMPGWWMGEPWIVKKYIDEVFSVGHGKLYASDGRSSQNPTKNYGKGG 112
E +K+ +AD I+Q P W G P I+K + + VF YA+ Y KG
Sbjct: 86 EQKKLEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYTYAA----------MYDKGP 135
Query: 113 LMQGKKYMLSLT 124
+ KK +LS+T
Sbjct: 136 -FRSKKAVLSIT 146
>pdb|1H69|A Chain A, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
Co With 2,3,5,6,Tetramethyl-P-Benzoquinone (Duroquinone)
At 2.5 Angstrom Resolution
pdb|1H69|B Chain B, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
Co With 2,3,5,6,Tetramethyl-P-Benzoquinone (Duroquinone)
At 2.5 Angstrom Resolution
pdb|1H69|C Chain C, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
Co With 2,3,5,6,Tetramethyl-P-Benzoquinone (Duroquinone)
At 2.5 Angstrom Resolution
pdb|1H69|D Chain D, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
Co With 2,3,5,6,Tetramethyl-P-Benzoquinone (Duroquinone)
At 2.5 Angstrom Resolution
pdb|1H66|A Chain A, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
Co With
2,5-Diaziridinyl-3-Hydroxyl-6-Methyl-1,4-Benzoquinone
pdb|1H66|B Chain B, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
Co With
2,5-Diaziridinyl-3-Hydroxyl-6-Methyl-1,4-Benzoquinone
pdb|1H66|C Chain C, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
Co With
2,5-Diaziridinyl-3-Hydroxyl-6-Methyl-1,4-Benzoquinone
pdb|1H66|D Chain D, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
Co With
2,5-Diaziridinyl-3-Hydroxyl-6-Methyl-1,4-Benzoquinone
Length = 273
Score = 33.5 bits (75), Expect = 0.017
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Query: 53 EVEKVFSADATIWQMPGWWMGEPWIVKKYIDEVFSVGHGKLYASDGRSSQNPTKNYGKGG 112
E +K+ +AD I+Q P W G P I+K + + VF YA+ Y KG
Sbjct: 87 EQKKLEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYTYAA----------MYDKGP 136
Query: 113 LMQGKKYMLSLT 124
+ KK +LS+T
Sbjct: 137 -FRSKKAVLSIT 147
>pdb|1KBO|A Chain A, Complex Of Human Recombinant Nad(P)h:quinone Oxide
Reductase Type 1 With 5-Methoxy-1,2-Dimethyl-3-
(Phenoxymethyl)indole-4,7-Dione (Es1340)
pdb|1KBO|B Chain B, Complex Of Human Recombinant Nad(P)h:quinone Oxide
Reductase Type 1 With 5-Methoxy-1,2-Dimethyl-3-
(Phenoxymethyl)indole-4,7-Dione (Es1340)
pdb|1KBO|C Chain C, Complex Of Human Recombinant Nad(P)h:quinone Oxide
Reductase Type 1 With 5-Methoxy-1,2-Dimethyl-3-
(Phenoxymethyl)indole-4,7-Dione (Es1340)
pdb|1KBO|D Chain D, Complex Of Human Recombinant Nad(P)h:quinone Oxide
Reductase Type 1 With 5-Methoxy-1,2-Dimethyl-3-
(Phenoxymethyl)indole-4,7-Dione (Es1340)
pdb|1D4A|A Chain A, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
At 1.7 A Resolution
pdb|1D4A|B Chain B, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
At 1.7 A Resolution
pdb|1D4A|C Chain C, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
At 1.7 A Resolution
pdb|1D4A|D Chain D, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
At 1.7 A Resolution
pdb|1DXO|A Chain A, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
Co With 2,3,5,6,Tetramethyl-P-Benzoquinone (Duroquinone)
At 2.5 Angstrom Resolution
pdb|1DXO|B Chain B, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
Co With 2,3,5,6,Tetramethyl-P-Benzoquinone (Duroquinone)
At 2.5 Angstrom Resolution
pdb|1DXO|C Chain C, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
Co With 2,3,5,6,Tetramethyl-P-Benzoquinone (Duroquinone)
At 2.5 Angstrom Resolution
pdb|1DXO|D Chain D, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase
Co With 2,3,5,6,Tetramethyl-P-Benzoquinone (Duroquinone)
At 2.5 Angstrom Resolution
pdb|1GG5|A Chain A, Crystal Structure Of A Complex Of Human Nad[p]h-Quinone
Oxidoreductase And A Chemotherapeutic Drug (E09) At 2.5
A Resolution
pdb|1GG5|B Chain B, Crystal Structure Of A Complex Of Human Nad[p]h-Quinone
Oxidoreductase And A Chemotherapeutic Drug (E09) At 2.5
A Resolution
pdb|1GG5|C Chain C, Crystal Structure Of A Complex Of Human Nad[p]h-Quinone
Oxidoreductase And A Chemotherapeutic Drug (E09) At 2.5
A Resolution
pdb|1GG5|D Chain D, Crystal Structure Of A Complex Of Human Nad[p]h-Quinone
Oxidoreductase And A Chemotherapeutic Drug (E09) At 2.5
A Resolution
pdb|1KBQ|A Chain A, Complex Of Human Nad(P)h Quinone Oxidoreductase With 5-
Methoxy-1,2-Dimethyl-3-(4-Nitrophenoxymethyl)indole-4,7-
Dione (Es936)
pdb|1KBQ|D Chain D, Complex Of Human Nad(P)h Quinone Oxidoreductase With 5-
Methoxy-1,2-Dimethyl-3-(4-Nitrophenoxymethyl)indole-4,7-
Dione (Es936)
pdb|1KBQ|B Chain B, Complex Of Human Nad(P)h Quinone Oxidoreductase With 5-
Methoxy-1,2-Dimethyl-3-(4-Nitrophenoxymethyl)indole-4,7-
Dione (Es936)
pdb|1KBQ|C Chain C, Complex Of Human Nad(P)h Quinone Oxidoreductase With 5-
Methoxy-1,2-Dimethyl-3-(4-Nitrophenoxymethyl)indole-4,7-
Dione (Es936)
Length = 273
Score = 33.5 bits (75), Expect = 0.017
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Query: 53 EVEKVFSADATIWQMPGWWMGEPWIVKKYIDEVFSVGHGKLYASDGRSSQNPTKNYGKGG 112
E +K+ +AD I+Q P W G P I+K + + VF YA+ Y KG
Sbjct: 87 EQKKLEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYTYAA----------MYDKGP 136
Query: 113 LMQGKKYMLSLT 124
+ KK +LS+T
Sbjct: 137 -FRSKKAVLSIT 147
>pdb|1KF0|A Chain A, Crystal Structure Of Pig Muscle Phosphoglycerate Kinase
Ternary Complex With Amp-Pcp And 3pg
Length = 416
Score = 32.7 bits (73), Expect = 0.028
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 9 GAKAFGSSGGKLNETLTDHAKKTLESLGLEVDTTIVDKGYEHAQEVEKVFSADATIWQMP 68
G F G K+ + L A+K + L VD DK EHA+ + ++ +P
Sbjct: 253 GTSLFDEEGAKIVKNLMSKAEKNGVKITLPVDFVTADKFDEHAKTGQATVASG-----IP 307
Query: 69 GWWMG---EPWIVKKYIDEV 85
WMG P KKY + V
Sbjct: 308 AGWMGLDCGPESSKKYSEAV 327
>pdb|1J5U|A Chain A, Crystal Structure Of Conserved Hypothetical Protein
(Tm1083) From Thermotoga Maritima At 2.0 A Resolution
Length = 136
Score = 28.9 bits (63), Expect = 0.41
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 12 AFGSSGGKLNETLTDHAKKTLESLGLEVDTTIVDKGYEHAQEVEKVFSADATIWQM---P 68
A+ SG E L + LE G+ +DT +K Y +E E F W +
Sbjct: 24 AYEISGNSYEELLEEARNILLEEEGIVLDTEEKEKXYP-LEETEDAFFDTVNDWILEISK 82
Query: 69 GWWMGEPWIVKKYIDEV 85
GW PW +K+ +E+
Sbjct: 83 GW---APWRIKREGNEL 96
>pdb|2MPR|A Chain A, Maltoporin From Salmonella Typhimurium
pdb|2MPR|B Chain B, Maltoporin From Salmonella Typhimurium
pdb|2MPR|C Chain C, Maltoporin From Salmonella Typhimurium
Length = 421
Score = 26.9 bits (58), Expect = 1.5
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 35 LGLEVDTTIVDKGYEHAQEVEK---VFSADATIWQMPGWWMGEPWIVKKYIDEVFSVGHG 91
LG++ GY+ A K +F+A+ T + G+ ++V+ D + + G G
Sbjct: 189 LGVDYGRANTTDGYKLADGASKDGWMFTAEHTQSMLKGY---NKFVVQYATDAMTTQGKG 245
Query: 92 KLYASDGRSSQNPTKNY 108
+ SDG SS NY
Sbjct: 246 QARGSDGSSSFTEKINY 262
>pdb|1B43|A Chain A, Fen-1 From P. Furiosus
pdb|1B43|B Chain B, Fen-1 From P. Furiosus
Length = 340
Score = 26.2 bits (56), Expect = 2.6
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 7 INGAKAFGSSGGKLNETLTDHAKKTLESLGLEV 39
I A+ + ++NE L + AKK LE +G+ +
Sbjct: 114 IEEARKYAQRATRVNEMLIEDAKKLLELMGIPI 146
>pdb|1EP3|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B. Data Collected Under Cryogenic
Conditions.
pdb|1EP1|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B
pdb|1EP2|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B Complexed With Orotate
Length = 311
Score = 26.2 bits (56), Expect = 2.6
Identities = 17/71 (23%), Positives = 35/71 (48%), Gaps = 1/71 (1%)
Query: 16 SGGKLNETLTDHAKKTLESLGLEVDTTIVDKG-YEHAQEVEKVFSADATIWQMPGWWMGE 74
+GG + A K + + +VD I+ G +AQ+V +++ A A+ + +
Sbjct: 217 TGGLSGPAIKPVALKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFAD 276
Query: 75 PWIVKKYIDEV 85
P++ K ID++
Sbjct: 277 PFVCPKIIDKL 287
>pdb|1MC8|A Chain A, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From
Pyrococcus Horikoshii
pdb|1MC8|B Chain B, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From
Pyrococcus Horikoshii
Length = 343
Score = 25.4 bits (54), Expect = 4.5
Identities = 10/30 (33%), Positives = 18/30 (59%)
Query: 10 AKAFGSSGGKLNETLTDHAKKTLESLGLEV 39
A+ + K+NE L + AKK L+ +G+ +
Sbjct: 117 ARKYAQRATKVNEMLIEDAKKLLQLMGIPI 146
>pdb|1B06|A Chain A, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|B Chain B, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|C Chain C, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|D Chain D, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|E Chain E, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|F Chain F, Superoxide Dismutase From Sulfolobus Acidocaldarius
Length = 210
Score = 25.4 bits (54), Expect = 4.5
Identities = 16/44 (36%), Positives = 23/44 (51%), Gaps = 1/44 (2%)
Query: 74 EPWIVKKYIDEVFSVGHGKLYASDGRSSQNPTKNYGKGGLMQGK 117
EP+I K ID ++ GH K Y + S + + KG L QG+
Sbjct: 22 EPYISKDIIDVHYN-GHHKGYVNGANSLLDRLEKLIKGDLPQGQ 64
>pdb|1KTJ|A Chain A, X-Ray Structure Of Der P 2, The Major House Dust Mite
Allergen
pdb|1KTJ|B Chain B, X-Ray Structure Of Der P 2, The Major House Dust Mite
Allergen
Length = 129
Score = 25.0 bits (53), Expect = 5.9
Identities = 9/22 (40%), Positives = 15/22 (67%)
Query: 107 NYGKGGLMQGKKYMLSLTWNAP 128
+Y K L++G++Y + TWN P
Sbjct: 74 HYMKCPLVKGQQYDIKYTWNVP 95
>pdb|1A9V| Tertiary Structure Of The Major House Dust Mite Allergen Der P 2,
Nmr, 10 Structures
Length = 129
Score = 25.0 bits (53), Expect = 5.9
Identities = 9/22 (40%), Positives = 15/22 (67%)
Query: 107 NYGKGGLMQGKKYMLSLTWNAP 128
+Y K L++G++Y + TWN P
Sbjct: 74 HYMKCPLVKGQQYDIKYTWNVP 95
>pdb|1EI9|A Chain A, Crystal Structure Of Palmitoyl Protein Thioesterase 1
pdb|1EXW|A Chain A, Crystal Structure Of Palmitoyl Protein Thioesterase 1
Complexed With Hexadecylsulfonyl Fluoride
pdb|1EH5|A Chain A, Crystal Structure Of Palmitoyl Protein Thioesterase 1
Complexed With Palmitate
Length = 279
Score = 24.6 bits (52), Expect = 7.7
Identities = 12/49 (24%), Positives = 27/49 (54%), Gaps = 7/49 (14%)
Query: 143 GVDVVYLHLHKAFQ-------FLGLSALPTFICNDVVKNPQVEQYLNSL 184
G+ V+ L + K + FL +++ T +C + K+P+++Q N++
Sbjct: 37 GIHVLSLEIGKTLREDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNAM 85
>pdb|1H2I|A Chain A, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|B Chain B, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|C Chain C, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|D Chain D, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|E Chain E, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|F Chain F, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|G Chain G, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|H Chain H, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|I Chain I, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|J Chain J, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|K Chain K, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|L Chain L, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|M Chain M, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|N Chain N, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|O Chain O, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|P Chain P, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|Q Chain Q, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|R Chain R, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|S Chain S, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|T Chain T, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|U Chain U, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|V Chain V, Human Rad52 Protein, N-Terminal Domain
Length = 209
Score = 24.6 bits (52), Expect = 7.7
Identities = 11/27 (40%), Positives = 15/27 (54%)
Query: 22 ETLTDHAKKTLESLGLEVDTTIVDKGY 48
E +TD K+ L S G + I+DK Y
Sbjct: 145 EAVTDGLKRALRSFGNALGNCILDKDY 171
>pdb|1KN0|A Chain A, Crystal Structure Of The Human Rad52 Protein
pdb|1KN0|B Chain B, Crystal Structure Of The Human Rad52 Protein
pdb|1KN0|C Chain C, Crystal Structure Of The Human Rad52 Protein
pdb|1KN0|D Chain D, Crystal Structure Of The Human Rad52 Protein
pdb|1KN0|E Chain E, Crystal Structure Of The Human Rad52 Protein
pdb|1KN0|F Chain F, Crystal Structure Of The Human Rad52 Protein
pdb|1KN0|G Chain G, Crystal Structure Of The Human Rad52 Protein
pdb|1KN0|H Chain H, Crystal Structure Of The Human Rad52 Protein
pdb|1KN0|I Chain I, Crystal Structure Of The Human Rad52 Protein
pdb|1KN0|J Chain J, Crystal Structure Of The Human Rad52 Protein
pdb|1KN0|K Chain K, Crystal Structure Of The Human Rad52 Protein
Length = 212
Score = 24.6 bits (52), Expect = 7.7
Identities = 11/27 (40%), Positives = 15/27 (54%)
Query: 22 ETLTDHAKKTLESLGLEVDTTIVDKGY 48
E +TD K+ L S G + I+DK Y
Sbjct: 145 EAVTDGLKRALRSFGNALGNCILDKDY 171
>pdb|1AF6|A Chain A, Maltoporin Sucrose Complex
pdb|1AF6|B Chain B, Maltoporin Sucrose Complex
pdb|1AF6|C Chain C, Maltoporin Sucrose Complex
pdb|1MPM|A Chain A, Maltoporin Maltose Complex
pdb|1MPM|B Chain B, Maltoporin Maltose Complex
pdb|1MPM|C Chain C, Maltoporin Maltose Complex
pdb|1MPO|A Chain A, Maltoporin Maltohexaose Complex
pdb|1MPO|B Chain B, Maltoporin Maltohexaose Complex
pdb|1MPO|C Chain C, Maltoporin Maltohexaose Complex
pdb|1MPQ|A Chain A, Maltoporin Trehalose Complex
pdb|1MPQ|B Chain B, Maltoporin Trehalose Complex
pdb|1MPQ|C Chain C, Maltoporin Trehalose Complex
pdb|1MAL| Mol_id: 1; Molecule: Maltoporin; Chain: Null; Synonym: Lamb
pdb|1MPN|A Chain A, Maltoporin Maltotriose Complex
pdb|1MPN|B Chain B, Maltoporin Maltotriose Complex
pdb|1MPN|C Chain C, Maltoporin Maltotriose Complex
Length = 421
Score = 24.6 bits (52), Expect = 7.7
Identities = 13/60 (21%), Positives = 27/60 (44%)
Query: 94 YASDGRSSQNPTKNYGKGGLMQGKKYMLSLTWNAPIEAFNDPSEFFEGVGVDVVYLHLHK 153
YA+D +SQ + G G +K+ ++ N + D G D++Y+ +++
Sbjct: 234 YATDSMTSQGKGLSQGSGVAFDNEKFAYNINNNGHMLRILDHGAISMGDNWDMMYVGMYQ 293
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.135 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,256,371
Number of Sequences: 13198
Number of extensions: 54102
Number of successful extensions: 155
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 139
Number of HSP's gapped (non-prelim): 20
length of query: 194
length of database: 2,899,336
effective HSP length: 83
effective length of query: 111
effective length of database: 1,803,902
effective search space: 200233122
effective search space used: 200233122
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)