BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645256|ref|NP_207426.1| quinone-reactive Ni/Fe
hydrogenase, large subunit (hydB) [Helicobacter pylori 26695]
(578 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1H2A|L Chain L, Single Crystals Of Hydrogenase From Des... 469 e-133
pdb|1H2R|L Chain L, Three-Dimensional Structure Of Ni-Fe Hy... 462 e-131
pdb|1FRF|L Chain L, Crystal Structure Of The Ni-Fe Hydrogen... 434 e-122
pdb|1FRV|B Chain B, Crystal Structure Of The Oxidized Form ... 427 e-120
pdb|2FRV|B Chain B, Crystal Structure Of The Oxidized Form ... 425 e-120
pdb|1E3D|B Chain B, [nife] Hydrogenase From Desulfovibrio D... 417 e-117
pdb|1CC1|L Chain L, Crystal Structure Of A Reduced, Active ... 263 5e-71
pdb|1JEH|B Chain B, Crystal Structure Of Yeast E3, Lipoamid... 28 2.1
pdb|1MHY|B Chain B, Methane Monooxygenase Hydroxylase >gi|2... 28 2.1
pdb|1T7P|A Chain A, T7 Dna Polymerase Complexed To Dna Prim... 28 2.8
pdb|1GGQ|A Chain A, Outer Surface Protein C (Ospc) Of Borre... 27 6.3
pdb|1KRH|A Chain A, X-Ray Stucture Of Benzoate Dioxygenase ... 27 8.2
>pdb|1H2A|L Chain L, Single Crystals Of Hydrogenase From Desulfovibrio Vulgaris
Length = 567
Score = 469 bits (1208), Expect = e-133
Identities = 262/578 (45%), Positives = 352/578 (60%), Gaps = 41/578 (7%)
Query: 2 SKKIVVDPITRIEGHLRIEVIVDDDNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRI 61
S IVVDP+TRIEGHLRIEV V++ V +A+SSSTLFRGLE I+KGRDPRDA QR
Sbjct: 22 SGPIVVDPVTRIEGHLRIEVEVENGKV-KNAYSSSTLFRGLEIILKGRDPRDAQHFTQRT 80
Query: 62 CGVCTYSHYKAGITAVENALGITPPLNAQLVRSLMNMALLFHDHVVHFYTLHGLDWCDIM 121
CGVCTY+H A V+NA+G+ P NA +R+L+ A HDH+VHFY LH LD+ D+
Sbjct: 81 CGVCTYTHALASTRCVDNAVGVHIPKNATYIRNLVLGAQYLHDHIVHFYHLHALDFVDVT 140
Query: 122 SALKADPIQAAKLSFKYSPYPINTGAGELKAVQKRLSDFAKSGSLGPFSNGYY--GHKTY 179
+ALKADP +AAK++ SP T A +LKAVQ +L F ++G LGPF+N Y+ GH Y
Sbjct: 141 AALKADPAKAAKVASSISPR--KTTAADLKAVQDKLKTFVETGQLGPFTNAYFLGGHPAY 198
Query: 180 RLSPEQNLIVLSHYLKLLEIQREAAKMTAIFGAKQPHPQSLTVGGVTSVMDILDPTRLAE 239
L PE NLI +HYL+ L +Q +AA+ A+FGAK PH Q VGGVT D L P R+AE
Sbjct: 199 YLDPETNLIATAHYLEALRLQVKAARAMAVFGAKNPHTQFTVVGGVT-CYDALTPQRIAE 257
Query: 240 WKSKFEVVANFINHAYYPDLVMAGEMFANEQSVIKGCGLRNFIAYEEVLLGRDKYLLSS- 298
+++ ++ F++ Y PDL++ + + + G NFI + E +D+Y L+S
Sbjct: 258 FEALWKETKAFVDEVYIPDLLVVAAAY---KDWTQYGGTDNFITFGE--FPKDEYDLNSR 312
Query: 299 ----GVVLDGDISKLHPIDESLIKEEVTHSWYQYEDTKEVQLHPYDGQTNPHYTGLKDGE 354
GVV D + P D+ I+E V HSWY+ + + HP+ GQT P YT L +
Sbjct: 313 FFKPGVVFKRDFKNIKPFDKMQIEEHVRHSWYEGAEAR----HPWKGQTQPKYTDLHGDD 368
Query: 355 SVGIENKIIPAKVLDTKNKYSWIKSPRYDSKPMEVGPLSSVVVGLAAKNPYVTEVATKFL 414
+YSW+K+PRY +PME GPL+ V++ + +P V V L
Sbjct: 369 ------------------RYSWMKAPRYMGEPMETGPLAQVLIAYSQGHPKVKAVTDAVL 410
Query: 415 KDTKLPLEALFSTLGRTAARCIEAKTIADNGLLAFDALVENL-KSDQSTCAPYHIDKNQE 473
+ EALFSTLGRTAAR IE IA+ + +N+ K D CAP+ + K E
Sbjct: 411 AKLGVGPEALFSTLGRTAARGIETAVIAEYVGVMLQEYKDNIAKGDNVICAPWEMPKQAE 470
Query: 474 YKGRYIGQVPRGMLSHWVRIKNGVVENYQAVVPSTWNAGPRDSQNQRGAYEMSLIGTKIA 533
G PRG LSHW+RI++G + N+Q VVPSTW GPR +N E SLIGT +A
Sbjct: 471 GVG--FVNAPRGGLSHWIRIEDGKIGNFQLVVPSTWTLGPRCDKNNVSPVEASLIGTPVA 528
Query: 534 DLTQPLEIIRTIHSFDPCIACSVHVMDFKGQSLNEFKV 571
D +P+EI+RT+HSFDPCIAC VHV+D +++F++
Sbjct: 529 DAKRPVEILRTVHSFDPCIACGVHVIDGHTNEVHKFRI 566
>pdb|1H2R|L Chain L, Three-Dimensional Structure Of Ni-Fe Hydrogenase From
Desulfivibrio Vulgaris Miyazaki F In The Reduced Form At
1.4 A Resolution
Length = 534
Score = 462 bits (1189), Expect = e-131
Identities = 259/564 (45%), Positives = 343/564 (59%), Gaps = 41/564 (7%)
Query: 2 SKKIVVDPITRIEGHLRIEVIVDDDNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRI 61
S IVVDP+TRIEGHLRIEV V++ V +A+SSSTLFRGLE I+KGRDPRDA QR
Sbjct: 4 SGPIVVDPVTRIEGHLRIEVEVENGKV-KNAYSSSTLFRGLEIILKGRDPRDAQHFTQRT 62
Query: 62 CGVCTYSHYKAGITAVENALGITPPLNAQLVRSLMNMALLFHDHVVHFYTLHGLDWCDIM 121
CGVCTY+H A V+NA+G+ P NA +R+L+ A HDH+VHFY LH LD+ D+
Sbjct: 63 CGVCTYTHALASTRCVDNAVGVHIPKNATYIRNLVLGAQYLHDHIVHFYHLHALDFVDVT 122
Query: 122 SALKADPIQAAKLSFKYSPYPINTGAGELKAVQKRLSDFAKSGSLGPFSNGYY--GHKTY 179
+ALKADP +AAK++ SP T A +LKAVQ +L F ++G LGPF+N Y+ GH Y
Sbjct: 123 AALKADPAKAAKVASSISPR--KTTAADLKAVQDKLKTFVETGQLGPFTNAYFLGGHPAY 180
Query: 180 RLSPEQNLIVLSHYLKLLEIQREAAKMTAIFGAKQPHPQSLTVGGVTSVMDILDPTRLAE 239
L PE NLI +HYL+ L +Q +AA+ A+FGAK PH Q VGGVT D L P R+AE
Sbjct: 181 YLDPETNLIATAHYLEALRLQVKAARAMAVFGAKNPHTQFTVVGGVT-CYDALTPQRIAE 239
Query: 240 WKSKFEVVANFINHAYYPDLVMAGEMFANEQSVIKGCGLRNFIAYEEVLLGRDKYLLSS- 298
+++ ++ F++ Y PDL++ + + + G NFI + E +D+Y L+S
Sbjct: 240 FEALWKETKAFVDEVYIPDLLVVAAAY---KDWTQYGGTDNFITFGE--FPKDEYDLNSR 294
Query: 299 ----GVVLDGDISKLHPIDESLIKEEVTHSWYQYEDTKEVQLHPYDGQTNPHYTGLKDGE 354
GVV D + P D+ I+E V HSWY+ + + HP+ GQT P YT L +
Sbjct: 295 FFKPGVVFKRDFKNIKPFDKMQIEEHVRHSWYEGAEAR----HPWKGQTQPKYTDLHGDD 350
Query: 355 SVGIENKIIPAKVLDTKNKYSWIKSPRYDSKPMEVGPLSSVVVGLAAKNPYVTEVATKFL 414
+YSW+K+PRY +PME GPL+ V++ + +P V V L
Sbjct: 351 ------------------RYSWMKAPRYMGEPMETGPLAQVLIAYSQGHPKVKAVTDAVL 392
Query: 415 KDTKLPLEALFSTLGRTAARCIEAKTIADNGLLAFDALVENL-KSDQSTCAPYHIDKNQE 473
+ EALFSTLGRTAAR IE IA+ + +N+ K D CAP+ + K E
Sbjct: 393 AKLGVGPEALFSTLGRTAARGIETAVIAEYVGVMLQEYKDNIAKGDNVICAPWEMPKQAE 452
Query: 474 YKGRYIGQVPRGMLSHWVRIKNGVVENYQAVVPSTWNAGPRDSQNQRGAYEMSLIGTKIA 533
G PRG LSHW+RI++G + N+Q VVPSTW GPR +N E SLIGT +A
Sbjct: 453 GVG--FVNAPRGGLSHWIRIEDGKIGNFQLVVPSTWTLGPRCDKNNVSPVEASLIGTPVA 510
Query: 534 DLTQPLEIIRTIHSFDPCIACSVH 557
D +P+EI+RT+HSFDPCIAC VH
Sbjct: 511 DAKRPVEILRTVHSFDPCIACGVH 534
>pdb|1FRF|L Chain L, Crystal Structure Of The Ni-Fe Hydrogenase From
Desulfovibrio Fructosovorans
Length = 564
Score = 434 bits (1117), Expect = e-122
Identities = 249/577 (43%), Positives = 334/577 (57%), Gaps = 39/577 (6%)
Query: 5 IVVDPITRIEGHLRIEVIVDDDNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRICGV 64
IVVDPITRIEGHLRI V V++ V DA+SSS LFRGLE I+KGRDPRDA QR CGV
Sbjct: 16 IVVDPITRIEGHLRIMVEVENGKV-KDAWSSSQLFRGLEIILKGRDPRDAQHFTQRACGV 74
Query: 65 CTYSHYKAGITAVENALGITPPLNAQLVRSLMNMALLFHDHVVHFYTLHGLDWCDIMSAL 124
CTY H A V++A+ ++ P NA+++R+L+ + HDH+VHFY LH LDW D+ +AL
Sbjct: 75 CTYVHALASSRCVDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHALDWVDVTAAL 134
Query: 125 KADPIQAAKLSFKYSPYPINTGAGELKAVQKRLSDFAKSGSLGPFSNGYY--GHKTYRLS 182
KADP +AAKL+ LKAVQ +L F +SG LG F+N Y+ GHK Y L
Sbjct: 135 KADPNKAAKLAASIDTARTGNSEKALKAVQDKLKAFVESGQLGIFTNAYFLGGHKAYYLP 194
Query: 183 PEQNLIVLSHYLKLLEIQREAAKMTAIFGAKQPHPQSLTVGGVTSVMDIL-DPTRLAEWK 241
PE NLI +HYL+ L +Q +AA AI G K PH Q VGG ++ + DP LA +
Sbjct: 195 PEVNLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGCSNYQGLTKDP--LANYL 252
Query: 242 SKFEVVANFINHAYYPDLVMAGEMFANEQSVIKGCGLRNFIAYEEVLL---GRDKYLLS- 297
+ + V F+N Y PDL+ + + + G N++A+ E +K+L +
Sbjct: 253 ALSKEVCQFVNECYIPDLLAVAGFYKDWGGI---GGTSNYLAFGEFATDDSSPEKHLATS 309
Query: 298 ---SGVVLDGDISKLHPIDESLIKEEVTHSWYQYEDTKEVQLHPYDGQTNPHYTGLKDGE 354
SGV+ D+ K+ +D I E+V +SWY + HPYDG T+P YT
Sbjct: 310 QFPSGVITGRDLGKVDNVDLGAIYEDVKYSWYAPGGDGK---HPYDGVTDPKYT------ 360
Query: 355 SVGIENKIIPAKVLDTKNKYSWIKSPRYDSKPMEVGPLSSVVVGLAAKNPYVTEVATKFL 414
LD K+ YSW+K+PRY K MEVGPL+ + A P +V L
Sbjct: 361 ------------KLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVL 408
Query: 415 KDTKLPLEALFSTLGRTAARCIEAKTIADNGLLAFDALVENLKSDQSTCAPYHIDKNQEY 474
+P AL STLGRTAAR IE + N + ++ D + CA + + +E
Sbjct: 409 GKLSVPATALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAKWEMP--EES 466
Query: 475 KGRYIGQVPRGMLSHWVRIKNGVVENYQAVVPSTWNAGPRDSQNQRGAYEMSLIGTKIAD 534
KG + PRG LSHW+RIK ++N+Q VVPSTWN GPR Q + E +LIGT IAD
Sbjct: 467 KGVGLADAPRGSLSHWIRIKGKKIDNFQLVVPSTWNLGPRGPQGDKSPVEEALIGTPIAD 526
Query: 535 LTQPLEIIRTIHSFDPCIACSVHVMDFKGQSLNEFKV 571
+P+EI+RT+H+FDPCIAC VHV++ + + +FKV
Sbjct: 527 PKRPVEILRTVHAFDPCIACGVHVIEPETNEILKFKV 563
>pdb|1FRV|B Chain B, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|1FRV|D Chain D, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
Length = 536
Score = 427 bits (1099), Expect = e-120
Identities = 251/563 (44%), Positives = 333/563 (58%), Gaps = 43/563 (7%)
Query: 4 KIVVDPITRIEGHLRIEVIVDDDNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRICG 63
KIVVDPITRIEGHLRIEV V+ I +A+S STLFRGLE I+KGRDPRDA QR CG
Sbjct: 8 KIVVDPITRIEGHLRIEVEVEGGK-IKNAWSMSTLFRGLEMILKGRDPRDAQHFTQRACG 66
Query: 64 VCTYSHYKAGITAVENALGITPPLNAQLVRSLMNMALLFHDHVVHFYTLHGLDWCDIMSA 123
VCTY H A + AV+N +G+ P NA L+R+L A HDH+VHFY LH LDW ++ +A
Sbjct: 67 VCTYVHALASVRAVDNCVGVKIPENATLMRNLTMGAQYMHDHLVHFYHLHALDWVNVANA 126
Query: 124 LKADPIQAAKLSFKYSPYPINTGAGELKAVQKRLSDFAKSGSLGPFSNGYY--GHKTYRL 181
L ADP +AA+L+ SP T + LKAVQ ++ +SG LG F+N Y+ GH Y L
Sbjct: 127 LNADPAKAARLANDLSPRKTTTES--LKAVQAKVKALVESGQLGIFTNAYFLGGHPAYVL 184
Query: 182 SPEQNLIVLSHYLKLLEIQREAAKMTAIFGAKQPHPQSLTVGGVTSVMDILDPTRLAEWK 241
E +LI +HYL+ L +Q +AA+ AIFGAK PH Q VGG T+ D L P R+AE++
Sbjct: 185 PAEVDLIATAHYLEALRVQVKAARAMAIFGAKNPHTQFTVVGGCTN-YDSLRPERIAEFR 243
Query: 242 SKFEVVANFINHAYYPDLVMAGEMFANEQSVIKGCGLRNFIAYEEVLLGRDKYLLSS--- 298
++ V FI Y DL+ + N + K NF+ E D+Y L+S
Sbjct: 244 KLYKEVREFIEQVYITDLLAVAGFYKNWAGIGK---TSNFLTCGE--FPTDEYDLNSRYT 298
Query: 299 --GVVLDGDISKLHPIDESLIKEEVTHSWYQYEDTKEVQLHPYDGQTNPHYTGLKDGESV 356
GV+ D+SK+ + LI+E V +SWY+ D HPY G T P +T
Sbjct: 299 PQGVIWGNDLSKVDDFNPDLIEEHVKYSWYEGADAH----HPYKGVTKPKWTEFHG---- 350
Query: 357 GIENKIIPAKVLDTKNKYSWIKSPRYDSKPMEVGPLSSVVVGLAAKNPYVTEVATKFLKD 416
+++YSW+K+PRY + EVGPL+SV+V A K+ + LK
Sbjct: 351 --------------EDRYSWMKAPRYKGEAFEVGPLASVLVAYAKKHEPTVKAVDLVLKT 396
Query: 417 TKLPLEALFSTLGRTAARCIEAKTIADNGLLAFDALVENLKSDQSTCAPYHIDKNQEYKG 476
+ EALFSTLGRTAAR I+ T A + D L N+K+ + + D +
Sbjct: 397 LGVGPEALFSTLGRTAARGIQCLTAAQEVEVWLDKLEANVKAGKD---DLYTDWQYPTES 453
Query: 477 RYIGQV--PRGMLSHWVRIKNGVVENYQAVVPSTWNAGPRDSQNQRGAYEMSLIGTKIAD 534
+ +G V PRGMLSHW+ + G +EN+Q VVPSTWN GPR ++ + A E +LIGT IAD
Sbjct: 454 QGVGFVNAPRGMLSHWIVQRGGKIENFQHVVPSTWNLGPRCAERKLSAVEQALIGTPIAD 513
Query: 535 LTQPLEIIRTIHSFDPCIACSVH 557
+P+EI+RT+HS+DPCIAC VH
Sbjct: 514 PKRPVEILRTVHSYDPCIACGVH 536
>pdb|2FRV|B Chain B, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|D Chain D, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|F Chain F, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|H Chain H, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|J Chain J, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|L Chain L, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
Length = 536
Score = 425 bits (1093), Expect = e-120
Identities = 250/563 (44%), Positives = 332/563 (58%), Gaps = 43/563 (7%)
Query: 4 KIVVDPITRIEGHLRIEVIVDDDNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRICG 63
KIVVDPITRIEGHLRIEV V+ I +A+S STLFRGLE I+KGRDPRDA QR CG
Sbjct: 8 KIVVDPITRIEGHLRIEVEVEGGK-IKNAWSMSTLFRGLEMILKGRDPRDAQHFTQRACG 66
Query: 64 VCTYSHYKAGITAVENALGITPPLNAQLVRSLMNMALLFHDHVVHFYTLHGLDWCDIMSA 123
VCTY H A + AV+N +G+ P NA L+R+L A HDH+VHFY LH LDW ++ +A
Sbjct: 67 VCTYVHALASVRAVDNCVGVKIPENATLMRNLTMGAQYMHDHLVHFYHLHALDWVNVANA 126
Query: 124 LKADPIQAAKLSFKYSPYPINTGAGELKAVQKRLSDFAKSGSLGPFSNGYY--GHKTYRL 181
L ADP +AA+L+ SP T + LKAVQ ++ +SG LG F+N Y+ GH Y L
Sbjct: 127 LNADPAKAARLANDLSPKKTTTES--LKAVQAKVKALVESGQLGIFTNAYFLGGHPAYVL 184
Query: 182 SPEQNLIVLSHYLKLLEIQREAAKMTAIFGAKQPHPQSLTVGGVTSVMDILDPTRLAEWK 241
E +LI +HYL+ L +Q +AA+ AIFGAK PH Q VGG T+ D L P R+AE++
Sbjct: 185 PAEVDLIATAHYLEALRVQVKAARAMAIFGAKNPHTQFTVVGGCTN-YDSLRPERIAEFR 243
Query: 242 SKFEVVANFINHAYYPDLVMAGEMFANEQSVIKGCGLRNFIAYEEVLLGRDKYLLSS--- 298
++ V FI Y DL+ + N + K NF+ E D+Y L+S
Sbjct: 244 KLYKEVREFIEQVYITDLLAVAGFYKNWAGIGK---TSNFLTCGE--FPTDEYDLNSRYT 298
Query: 299 --GVVLDGDISKLHPIDESLIKEEVTHSWYQYEDTKEVQLHPYDGQTNPHYTGLKDGESV 356
GV+ D+SK+ + LI+E V +SWY+ HPY G T P +T
Sbjct: 299 PQGVIWGNDLSKVDDFNPDLIEEHVKYSWYEGAGAH----HPYKGVTKPKWTEFHG---- 350
Query: 357 GIENKIIPAKVLDTKNKYSWIKSPRYDSKPMEVGPLSSVVVGLAAKNPYVTEVATKFLKD 416
+++YSW+K+PRY + EVGPL+SV+V A K+ + LK
Sbjct: 351 --------------EDRYSWMKAPRYKGEAFEVGPLASVLVAYAKKHEPTVKAVDLVLKT 396
Query: 417 TKLPLEALFSTLGRTAARCIEAKTIADNGLLAFDALVENLKSDQSTCAPYHIDKNQEYKG 476
+ EALFSTLGRTAAR I+ T A + D L N+K+ + + D +
Sbjct: 397 LGVGPEALFSTLGRTAARGIQCLTAAQEVEVWLDKLEANVKAGKD---DLYTDWQYPTES 453
Query: 477 RYIGQV--PRGMLSHWVRIKNGVVENYQAVVPSTWNAGPRDSQNQRGAYEMSLIGTKIAD 534
+ +G V PRGMLSHW+ + G +EN+Q VVPSTWN GPR ++ + A E +LIGT IAD
Sbjct: 454 QGVGFVNAPRGMLSHWIVQRGGKIENFQLVVPSTWNLGPRCAEGKLSAVEQALIGTPIAD 513
Query: 535 LTQPLEIIRTIHSFDPCIACSVH 557
+P+EI+RT+HS+DPCIAC VH
Sbjct: 514 PKRPVEILRTVHSYDPCIACGVH 536
>pdb|1E3D|B Chain B, [nife] Hydrogenase From Desulfovibrio Desulfuricans Atcc
27774
pdb|1E3D|D Chain D, [nife] Hydrogenase From Desulfovibrio Desulfuricans Atcc
27774
Length = 542
Score = 417 bits (1073), Expect = e-117
Identities = 238/560 (42%), Positives = 320/560 (56%), Gaps = 39/560 (6%)
Query: 5 IVVDPITRIEGHLRIEVIVDDDNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRICGV 64
IVVDP+TRIEGHLRIEV V+ VI +A S +TLFRG+ETI+KGRDPRDA QR CGV
Sbjct: 15 IVVDPLTRIEGHLRIEVEVEG-GVIKEARSCATLFRGIETILKGRDPRDAQHFTQRTCGV 73
Query: 65 CTYSHYKAGITAVENALGITPPLNAQLVRSLMNMALLFHDHVVHFYTLHGLDWCDIMSAL 124
CTY+H A +E+A+ P NA +R+L+ HDH+VHFY LH LD+ D+ SAL
Sbjct: 74 CTYTHALASTRCLEDAINKPIPANATYIRNLVLGNQFMHDHLVHFYHLHALDFVDVTSAL 133
Query: 125 KADPIQAAKLSFKYSPYPINTGAGELKAVQKRLSDFAKSGSLGPFSNGYY--GHKTYRLS 182
ADP +AAKL+ SP T E AVQ +L F SG LGPF+N Y+ GH+ Y +
Sbjct: 134 LADPAKAAKLANSISPRKATT--EEFAAVQAKLKTFVASGQLGPFTNAYFLGGHEGYYMD 191
Query: 183 PEQNLIVLSHYLKLLEIQREAAKMTAIFGAKQPHPQSLTVGGVTSVMDILDPTRLAEWKS 242
PE NL+ +HYL+ L Q E AK A+FGAK PH Q GGVT + L P R+ +++
Sbjct: 192 PEANLVCTAHYLQALRAQVEVAKGMAVFGAKNPHTQFTVAGGVT-CYEALTPERIKQFRE 250
Query: 243 KFEVVANFINHAYYPDLVMAGEMFANEQSVIKGCGLRNFIAYEEVLLGRDKYLLSS---- 298
+ FI Y PDL++ + + + G NF+A+ E + L+S
Sbjct: 251 LYVKARAFIEEVYIPDLLLVASYYKDWGKI---GGTNNFMAFGEFPAPGGERDLNSRWYK 307
Query: 299 -GVVLDGDISKLHPIDESLIKEEVTHSWYQYEDTKEVQLHPYDGQTNPHYTGLKDGESVG 357
GV+ D + + P D S I+E V HSWY+ + P++G+TNPH+T + D
Sbjct: 308 PGVIYDRKVGSVQPFDPSKIEEHVRHSWYEGKARA-----PFEGETNPHFTFMGD----- 357
Query: 358 IENKIIPAKVLDTKNKYSWIKSPRYDSKPMEVGPLSSVVVGLAAKNPYVTEVATKFLKDT 417
+KYSW K+PRYD +E GPL+ ++V + + L
Sbjct: 358 -------------TDKYSWNKAPRYDGHAVETGPLAQMLVAYGHNHKTIKPTIDAVLGKL 404
Query: 418 KLPLEALFSTLGRTAARCIEAKTIADNGLLAFDALVENLKSDQSTCAPYHIDKNQEYKGR 477
L EALFSTLGRTAAR I+ IA + N+ D+ Y + + +G
Sbjct: 405 NLGPEALFSTLGRTAARGIQTLVIAQQMENWLNEYENNIVKDKQIVEDYAVPTSA--RGV 462
Query: 478 YIGQVPRGMLSHWVRIKNGVVENYQAVVPSTWNAGPRDSQNQRGAYEMSLIGTKIADLTQ 537
V RG LSHW+ I++G ++N+Q VVP+TWN GPRD + A E +L+GT +AD +
Sbjct: 463 GFADVSRGGLSHWMTIEDGKIDNFQLVVPTTWNLGPRDDKGVPSAAEAALVGTPVADPKR 522
Query: 538 PLEIIRTIHSFDPCIACSVH 557
P+EI+RTIHSFDPCIACS H
Sbjct: 523 PVEILRTIHSFDPCIACSTH 542
>pdb|1CC1|L Chain L, Crystal Structure Of A Reduced, Active Form Of The
Ni-Fe-Se Hydrogenase From Desulfomicrobium Baculatum
Length = 498
Score = 263 bits (671), Expect = 5e-71
Identities = 187/565 (33%), Positives = 277/565 (48%), Gaps = 90/565 (15%)
Query: 4 KIVVDPITRIEGHLRIEVIVDDDNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRICG 63
KI +DP+TR+EGHL+IEV V D V+ DA S +FRG E I++GRDPRD+ I QRICG
Sbjct: 13 KISIDPLTRVEGHLKIEVEVKDGKVV-DAKCSGGMFRGFEQILRGRDPRDSSQIVQRICG 71
Query: 64 VCTYSHYKAGITAVENALGITPPLNAQLVRSLMNMALLFHDHVVHFYTLHGLDWCDIMSA 123
VC +H A + A ++A G+ N ++ R+L+ A H++HFY L LD+
Sbjct: 72 VCPTAHCTASVMAQDDAFGVKVTTNGRITRNLIFGANYLQSHILHFYHLAALDY------ 125
Query: 124 LKADPIQAAKLSFKYSPYPINTGAGELKAVQKRLSDFAKSGSLGPFSNGYYGHKTYRLSP 183
+K + SP+ +L L+D K G+ +N Y
Sbjct: 126 VKGPDV---------SPFVPRYANADL------LTDRIKDGAKADATNTY---------- 160
Query: 184 EQNLIVLSHYLKLLEIQREAAKMTAIFGAKQPHPQSLTVGGVTSVMDILDPTRLAEWKSK 243
L+ YLK LEI+R +M A+FG + PH Q + VGG T +I ++AE+ ++
Sbjct: 161 -----GLNQYLKALEIRRICHEMVAMFGGRMPHVQGMVVGGAT---EIPTADKVAEYAAR 212
Query: 244 FEVVANFINHAYYPDLVMAGEMFANEQSVIKGCGLRNFIAYEEVLLGRD--KYLLSSGVV 301
F+ V F+ Y P + G ++ + G G +N IA+ D +LL GV
Sbjct: 213 FKEVQKFVIEEYLPLIYTLGSVYTDLFET--GIGWKNVIAFGVFPEDDDYKTFLLKPGVY 270
Query: 302 LDGDISKLHPIDESLIKEEVTHSWYQYEDTKEVQLHPYDGQTNPHYTGLKDGESVGIENK 361
+DG K D L+KE V HS++ + + LH G+TNP+
Sbjct: 271 IDG---KDEEFDSKLVKEYVGHSFFDH--SAPGGLHYSVGETNPN--------------- 310
Query: 362 IIPAKVLDTKNKYSWIKSPRYDSKPMEVGPLSSVVVGLAAKNPYVTEVATKFLKDTKLPL 421
D YS++K+PRY KP EVGPL+ + V +NP ++ V K LK+ +
Sbjct: 311 ------PDKPGAYSFVKAPRYKDKPCEVGPLARMWV----QNPELSPVGQKLLKEL-YGI 359
Query: 422 EA---------LFSTLGRTAARCIEAKTIADNGLLAFDALVENLKSDQSTCAPYHIDKNQ 472
EA FS +GR R E A +A + ++ ++ T I
Sbjct: 360 EAKKFRDLGDKAFSIMGRHVLRAEETWLTA----VAVEKWLKQVQPGAETYVKSEIPDAA 415
Query: 473 EYKGRYIGQVPRGMLSHWVRIKNGVVENYQAVVPSTWNAGPRDSQNQRGAYEMSLIGTKI 532
E G + PRG L H+++IK+ +ENYQ V + WNA PRD QRG E +LIG +
Sbjct: 416 E--GTGFTEAPRGALLHYLKIKDKKIENYQIVSATLWNANPRDDMGQRGPIEEALIGVPV 473
Query: 533 ADLTQPLEIIRTIHSFDPCIACSVH 557
D+ P+ + R + S+DP + C+VH
Sbjct: 474 PDIKNPVNVGRLVRSYDPXLGCAVH 498
>pdb|1JEH|B Chain B, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
Length = 478
Score = 28.5 bits (62), Expect = 2.1
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 4 KIVVDPITRIEGHLRIEVIVDDDNVITDAFSSSTLFRGLE 43
KI V P+ +EG ++ + I+D N+I S T F G+E
Sbjct: 125 KIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFPGIE 164
>pdb|1MHY|B Chain B, Methane Monooxygenase Hydroxylase
pdb|1MHZ|B Chain B, Methane Monooxygenase Hydroxylase
Length = 395
Score = 28.5 bits (62), Expect = 2.1
Identities = 15/39 (38%), Positives = 20/39 (50%), Gaps = 2/39 (5%)
Query: 349 GLKDGESVGIENKIIPAKVLDTKNKYSWIKSPRYDSKPM 387
GL D E I +P LDT+ KY + PR+ KP+
Sbjct: 13 GLTDPERAAIIAAAVPDHALDTQRKYHYFIQPRW--KPL 49
>pdb|1T7P|A Chain A, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
Length = 698
Score = 28.1 bits (61), Expect = 2.8
Identities = 15/42 (35%), Positives = 20/42 (46%)
Query: 320 EVTHSWYQYEDTKEVQLHPYDGQTNPHYTGLKDGESVGIENK 361
E SWYQ + E+ HP G+ P Y +K + GI K
Sbjct: 253 ETFGSWYQPKGGTEMFCHPRTGKPLPKYPRIKTPKVGGIFKK 294
>pdb|1GGQ|A Chain A, Outer Surface Protein C (Ospc) Of Borrelia Burgdorferi
Strain B31
pdb|1GGQ|B Chain B, Outer Surface Protein C (Ospc) Of Borrelia Burgdorferi
Strain B31
pdb|1GGQ|C Chain C, Outer Surface Protein C (Ospc) Of Borrelia Burgdorferi
Strain B31
pdb|1GGQ|D Chain D, Outer Surface Protein C (Ospc) Of Borrelia Burgdorferi
Strain B31
Length = 174
Score = 26.9 bits (58), Expect = 6.3
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 402 KNPYVTEVATKFLKDTKLPL-----EALFSTLGRTAARCIEAKTIADNGL 446
K P +TE++ K + L EAL S++ AA+ I K +NGL
Sbjct: 2 KGPNLTEISKKITDSNAVLLAVKEVEALLSSIDEIAAKAIGKKIHQNNGL 51
>pdb|1KRH|A Chain A, X-Ray Stucture Of Benzoate Dioxygenase Reductase
pdb|1KRH|B Chain B, X-Ray Stucture Of Benzoate Dioxygenase Reductase
Length = 338
Score = 26.6 bits (57), Expect = 8.2
Identities = 20/69 (28%), Positives = 28/69 (39%), Gaps = 2/69 (2%)
Query: 25 DDNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRICGVC--TYSHYKAGITAVENALG 82
+DN I DA + +G + R DA F Q VC H++ + VEN
Sbjct: 62 EDNYIEDALTPEEAQQGYVLACQCRPTSDAVFQIQASSEVCKTKIHHFEGTLARVENLSD 121
Query: 83 ITPPLNAQL 91
T + QL
Sbjct: 122 STITFDIQL 130
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,429,732
Number of Sequences: 13198
Number of extensions: 145244
Number of successful extensions: 400
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 336
Number of HSP's gapped (non-prelim): 13
length of query: 578
length of database: 2,899,336
effective HSP length: 93
effective length of query: 485
effective length of database: 1,671,922
effective search space: 810882170
effective search space used: 810882170
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)