BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645258|ref|NP_207428.1| quinone-reactive Ni/Fe
hydrogenase (hydD) [Helicobacter pylori 26695]
(178 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1CFZ|A Chain A, Hydrogenase Maturating Endopeptidase Hy... 70 1e-13
pdb|1C44|A Chain A, Sterol Carrier Protein 2 (Scp2) From Ra... 26 3.0
pdb|1QND|A Chain A, Sterol Carrier Protein-2, Nmr, 20 Struc... 26 3.0
>pdb|1CFZ|A Chain A, Hydrogenase Maturating Endopeptidase Hybd From E. Coli
pdb|1CFZ|B Chain B, Hydrogenase Maturating Endopeptidase Hybd From E. Coli
pdb|1CFZ|C Chain C, Hydrogenase Maturating Endopeptidase Hybd From E. Coli
pdb|1CFZ|D Chain D, Hydrogenase Maturating Endopeptidase Hybd From E. Coli
pdb|1CFZ|E Chain E, Hydrogenase Maturating Endopeptidase Hybd From E. Coli
pdb|1CFZ|F Chain F, Hydrogenase Maturating Endopeptidase Hybd From E. Coli
Length = 162
Score = 70.5 bits (171), Expect = 1e-13
Identities = 44/156 (28%), Positives = 81/156 (51%), Gaps = 3/156 (1%)
Query: 4 KILILGIGNILFGDEGIGVHLAHYLKKNFSFFPSVDIIDGGTMAQQLIPLITSYEKVLIL 63
+IL+LG+GNIL DE IGV + L++ + V+I+DGGT +L+ + + + ++I
Sbjct: 2 RILVLGVGNILLTDEAIGVRIVEALEQRYILPDYVEILDGGTAGMELLGDMANRDHLIIA 61
Query: 64 DCVSAEGVEIGSVYAFDFKDAPKEITWAGSAHEVEMLHTLRLTEFLGDLPKTF-IVGLVP 122
D + ++ G++ ++ P T S H++ + L F G+ PK +VG++P
Sbjct: 62 DAIVSKKNAPGTMMILRDEEVPALFTNKISPHQLGLADVLSALRFTGEFPKKLTLVGVIP 121
Query: 123 FVIGSETTFKLSSKILNALETALKAIETQLNAWGVK 158
+ E L+ + +E AL+ + L GV+
Sbjct: 122 ESL--EPHIGLTPTVEAMIEPALEQVLAALRESGVE 155
>pdb|1C44|A Chain A, Sterol Carrier Protein 2 (Scp2) From Rabbit
Length = 123
Score = 25.8 bits (55), Expect = 3.0
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Query: 72 EIGSVYAFDFKDAP--KEITW 90
+IG ++AF KD P KE TW
Sbjct: 30 KIGGIFAFKVKDGPGGKEATW 50
>pdb|1QND|A Chain A, Sterol Carrier Protein-2, Nmr, 20 Structures
Length = 123
Score = 25.8 bits (55), Expect = 3.0
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Query: 72 EIGSVYAFDFKDAP--KEITW 90
+IG ++AF KD P KE TW
Sbjct: 30 KIGGIFAFKVKDGPGGKEATW 50
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.140 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,001,982
Number of Sequences: 13198
Number of extensions: 39629
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 92
Number of HSP's gapped (non-prelim): 3
length of query: 178
length of database: 2,899,336
effective HSP length: 82
effective length of query: 96
effective length of database: 1,817,100
effective search space: 174441600
effective search space used: 174441600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)