BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645260|ref|NP_207430.1| hypothetical protein
[Helicobacter pylori 26695]
         (92 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1D8U|A  Chain A, Crystal Structure Of Non-Symbiotic Plan...    26  0.83
pdb|1EUZ|E  Chain E, Glutamate Dehydrogenase From Thermococc...    25  1.4
pdb|1CJU|C  Chain C, Complex Of Gs-Alpha With The Catalytic ...    24  2.4
pdb|1BVU|A  Chain A, Glutamate Dehydrogenase From Thermococc...    24  3.1
pdb|1J6U|A  Chain A, Crystal Structure Of Udp-N-Acetylmurama...    23  7.0
pdb|3HAD|A  Chain A, Biochemical Characterization And Struct...    22  9.1
pdb|1K32|A  Chain A, Crystal Structure Of The Tricorn Protea...    22  9.1
pdb|7AHL|B  Chain B, Alpha-Hemolysin From Staphylococcus Aur...    22  9.1

>pdb|1D8U|A Chain A, Crystal Structure Of Non-Symbiotic Plant Hemoglobin From
          Rice
 pdb|1D8U|B Chain B, Crystal Structure Of Non-Symbiotic Plant Hemoglobin From
          Rice
          Length = 166

 Score = 25.8 bits (55), Expect = 0.83
 Identities = 13/40 (32%), Positives = 22/40 (54%), Gaps = 3/40 (7%)

Query: 37 FYKFHKNHKNDKKLYDFTKNSGLEGIDLEKSPNLKSHKKS 76
          F K  +   +  +++ F +NS    + LEK+P LK+H  S
Sbjct: 41 FLKIFEVAPSASQMFSFLRNSD---VPLEKNPKLKTHAMS 77



>pdb|1EUZ|E Chain E, Glutamate Dehydrogenase From Thermococcus Profundus In The
           Unligated State
 pdb|1EUZ|A Chain A, Glutamate Dehydrogenase From Thermococcus Profundus In The
           Unligated State
 pdb|1EUZ|C Chain C, Glutamate Dehydrogenase From Thermococcus Profundus In The
           Unligated State
 pdb|1EUZ|D Chain D, Glutamate Dehydrogenase From Thermococcus Profundus In The
           Unligated State
 pdb|1EUZ|F Chain F, Glutamate Dehydrogenase From Thermococcus Profundus In The
           Unligated State
 pdb|1EUZ|B Chain B, Glutamate Dehydrogenase From Thermococcus Profundus In The
           Unligated State
          Length = 419

 Score = 25.0 bits (53), Expect = 1.4
 Identities = 11/31 (35%), Positives = 19/31 (60%), Gaps = 1/31 (3%)

Query: 21  TDLETETKSEKKSSKKFYKFHKNHKNDKKLY 51
           T+ E   K +KK +K F++ +  HK DK ++
Sbjct: 365 TEEEVREKLDKKMTKAFWEVYNTHK-DKNIH 394



>pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
           Mammalian Adenylyl Cyclase: Complex With
           Beta-L-2',3'-Dideoxyatp And Mg
 pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
           Mammalian Adenylyl Cyclase: Complex With
           Beta-L-2',3'-Dideoxyatp, Mn, And Mg
 pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
           Mammalian Adenylyl Cyclase: Complex With Adenosine
           5'-(Alpha Thio)- Triphosphate (Rp), Mg, And Mn
 pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
           Mammalian Adenylyl Cyclase: Complex With
           Beta-L-2',3'-Dideoxyatp, Mg, And Zn
          Length = 402

 Score = 24.3 bits (51), Expect = 2.4
 Identities = 23/94 (24%), Positives = 36/94 (37%), Gaps = 27/94 (28%)

Query: 22  DLETETKSEKKSSKKFYKFHKNHKNDKKLYDFTKNSGLEGIDL----------------- 64
           D   E K++++++KK     K  + DK++Y  T    L G                    
Sbjct: 11  DQRNEEKAQREANKKI---EKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRILHVNG 67

Query: 65  -------EKSPNLKSHKKSDKKFYKQLAKNNIAE 91
                  E+ PN KS+   +K    Q  KNN+ E
Sbjct: 68  FNGGEGGEEDPNAKSNSDGEKATKVQDIKNNLKE 101



>pdb|1BVU|A Chain A, Glutamate Dehydrogenase From Thermococcus Litoralis
 pdb|1BVU|B Chain B, Glutamate Dehydrogenase From Thermococcus Litoralis
 pdb|1BVU|C Chain C, Glutamate Dehydrogenase From Thermococcus Litoralis
 pdb|1BVU|D Chain D, Glutamate Dehydrogenase From Thermococcus Litoralis
 pdb|1BVU|E Chain E, Glutamate Dehydrogenase From Thermococcus Litoralis
 pdb|1BVU|F Chain F, Glutamate Dehydrogenase From Thermococcus Litoralis
          Length = 418

 Score = 23.9 bits (50), Expect = 3.1
 Identities = 9/22 (40%), Positives = 13/22 (58%)

Query: 24  ETETKSEKKSSKKFYKFHKNHK 45
           ET  K +KK +K F+  +  HK
Sbjct: 367 ETRAKLDKKMTKAFWDVYNTHK 388



>pdb|1J6U|A Chain A, Crystal Structure Of Udp-N-Acetylmuramate--Alanine Ligase
           (Tm0231) From Thermotoga Maritima At 2.3 A Resolution
          Length = 469

 Score = 22.7 bits (47), Expect = 7.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 42  KNHKNDKKLYDFTKNSGLEGIDLEKSPNLK 71
           KN  + K ++D  K+ G E   +EK P L+
Sbjct: 395 KNGISGKXIWDSLKSLGKEAYFVEKLPELE 424



>pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination
           Of Human Heart Short Chain L-3-Hydroxyacyl Coa
           Dehydrogenase Provide Insight Into Catalytic Mechanism
 pdb|3HAD|B Chain B, Biochemical Characterization And Structure Determination
           Of Human Heart Short Chain L-3-Hydroxyacyl Coa
           Dehydrogenase Provide Insight Into Catalytic Mechanism
          Length = 308

 Score = 22.3 bits (46), Expect = 9.1
 Identities = 9/22 (40%), Positives = 13/22 (58%)

Query: 23  LETETKSEKKSSKKFYKFHKNH 44
           L  E K  KK+ + FYK+  +H
Sbjct: 284 LVAENKFGKKTGEGFYKYKHHH 305



>pdb|1K32|A Chain A, Crystal Structure Of The Tricorn Protease
 pdb|1K32|B Chain B, Crystal Structure Of The Tricorn Protease
 pdb|1K32|C Chain C, Crystal Structure Of The Tricorn Protease
 pdb|1K32|D Chain D, Crystal Structure Of The Tricorn Protease
 pdb|1K32|E Chain E, Crystal Structure Of The Tricorn Protease
 pdb|1K32|F Chain F, Crystal Structure Of The Tricorn Protease
          Length = 1045

 Score = 22.3 bits (46), Expect = 9.1
 Identities = 10/47 (21%), Positives = 21/47 (44%)

Query: 5   RNLFLVSFVAYSSVFATDLETETKSEKKSSKKFYKFHKNHKNDKKLY 51
           R  F+     +  +++TDL+ +   +  S   +Y  H N    + L+
Sbjct: 215 RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILF 261



>pdb|7AHL|B Chain B, Alpha-Hemolysin From Staphylococcus Aureus
 pdb|7AHL|C Chain C, Alpha-Hemolysin From Staphylococcus Aureus
 pdb|7AHL|E Chain E, Alpha-Hemolysin From Staphylococcus Aureus
 pdb|7AHL|F Chain F, Alpha-Hemolysin From Staphylococcus Aureus
 pdb|7AHL|G Chain G, Alpha-Hemolysin From Staphylococcus Aureus
 pdb|7AHL|A Chain A, Alpha-Hemolysin From Staphylococcus Aureus
 pdb|7AHL|D Chain D, Alpha-Hemolysin From Staphylococcus Aureus
          Length = 293

 Score = 22.3 bits (46), Expect = 9.1
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 16 SSVFATDLETETKSEKKSSKKFYKFHKNHKNDKKL 50
          ++V   DL T  K      K FY F  +  ++KKL
Sbjct: 18 TTVKTGDLVTYDKENGMHKKVFYSFIDDKNHNKKL 52



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.312    0.129    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 476,788
Number of Sequences: 13198
Number of extensions: 17852
Number of successful extensions: 30
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 8
length of query: 92
length of database: 2,899,336
effective HSP length: 68
effective length of query: 24
effective length of database: 2,001,872
effective search space: 48044928
effective search space used: 48044928
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 46 (22.3 bits)