BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645261|ref|NP_207431.1| hypothetical protein
[Helicobacter pylori 26695]
(150 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1I50|A Chain A, Rna Polymerase Ii Crystal Form Ii At 2.... 25 2.9
pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form ... 25 3.8
pdb|1GAK|A Chain A, Crystal Structure Of Green Abalone Sp18 25 4.9
pdb|1I7M|A Chain A, Human S-Adenosylmethionine Decarboxylas... 25 4.9
pdb|2BP2| Prophospholipase A2 25 4.9
pdb|1JEN|A Chain A, Human S-Adenosylmethionine Decarboxylas... 24 6.5
pdb|1BWV|A Chain A, Activated Ribulose 1,5-Bisphosphate Car... 24 6.5
pdb|1I7C|A Chain A, Human S-Adenosylmethionine Decarboxylas... 24 6.5
pdb|1JL0|B Chain B, Structure Of A Human S-Adenosylmethioni... 24 6.5
>pdb|1I50|A Chain A, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
pdb|1I3Q|A Chain A, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
pdb|1I6H|A Chain A, Rna Polymerase Ii Elongation Complex
pdb|1K83|A Chain A, Crystal Structure Of Yeast Rna Polymerase Ii Complexed With
The Inhibitor Alpha Amanitin
Length = 1733
Score = 25.4 bits (54), Expect = 2.9
Identities = 30/111 (27%), Positives = 40/111 (36%), Gaps = 30/111 (27%)
Query: 42 EEVLVKDPKETKAQEVAREEKAIQQENATIDARTTPLINRFTNYSAYGSLNGFYNSVDNL 101
EE LVK E K E+ + D TP N G +N + D L
Sbjct: 1447 EESLVKYMPEQKITEIEDGQ----------DGGVTPYSNES------GLVNADLDVKDEL 1490
Query: 102 ------NSPMQNGMYGGYYMPYYYMPYGFMPYGSGLMPYGPYGYG--APGY 144
+S + M GG+ YG YG P+G YG +PG+
Sbjct: 1491 MFSPLVDSGSNDAMAGGF------TAYGGADYGEATSPFGAYGEAPTSPGF 1535
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 25.0 bits (53), Expect = 3.8
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 53 KAQEVAREEKAIQQE 67
KAQE+A E+KAIQ E
Sbjct: 332 KAQEIAPEDKAIQAE 346
>pdb|1GAK|A Chain A, Crystal Structure Of Green Abalone Sp18
Length = 141
Score = 24.6 bits (52), Expect = 4.9
Identities = 10/38 (26%), Positives = 19/38 (49%)
Query: 61 EKAIQQENATIDARTTPLINRFTNYSAYGSLNGFYNSV 98
+K +Q ++ ++ +T + RF Y YG + Y V
Sbjct: 68 KKILQLKHLPVNKKTLTKMGRFVGYRNYGVIRELYADV 105
>pdb|1I7M|A Chain A, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Complexed With
4-Amidinoindan-1- One-2'-Amidinohydrazone
pdb|1I7M|C Chain C, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Complexed With
4-Amidinoindan-1- One-2'-Amidinohydrazone
Length = 267
Score = 24.6 bits (52), Expect = 4.9
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 77 PLINRFTNYSAYGSLNGFYNSVDNLNSPMQNG 108
PL+ +YS + S+ F+ S N P G
Sbjct: 26 PLLKLARDYSGFDSIQSFFYSRKNFXKPSHQG 57
>pdb|2BP2| Prophospholipase A2
Length = 130
Score = 24.6 bits (52), Expect = 4.9
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 56 EVAREEKAIQQENATIDAR---TTPLINRFTNYSAYGSLNGFYNSVDNLN 102
E +A+ Q N I + + PL++ F NY Y L G VD+L+
Sbjct: 1 EAGLNSRALWQFNGMIKCKIPSSEPLLD-FNNYGCYCGLGGSGTPVDDLD 49
>pdb|1JEN|A Chain A, Human S-Adenosylmethionine Decarboxylase
pdb|1JEN|C Chain C, Human S-Adenosylmethionine Decarboxylase
Length = 267
Score = 24.3 bits (51), Expect = 6.5
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 77 PLINRFTNYSAYGSLNGFYNSVDNLNSPMQNG 108
PL+ +YS + S+ F+ S N P G
Sbjct: 26 PLLKLARDYSGFDSIQSFFYSRKNFMKPSHQG 57
>pdb|1BWV|A Chain A, Activated Ribulose 1,5-Bisphosphate CarboxylaseOXYGENASE
(Rubisco) Complexed With The Reaction Intermediate
Analogue 2-Carboxyarabinitol 1,5-Bisphosphate
pdb|1BWV|C Chain C, Activated Ribulose 1,5-Bisphosphate CarboxylaseOXYGENASE
(Rubisco) Complexed With The Reaction Intermediate
Analogue 2-Carboxyarabinitol 1,5-Bisphosphate
pdb|1BWV|E Chain E, Activated Ribulose 1,5-Bisphosphate CarboxylaseOXYGENASE
(Rubisco) Complexed With The Reaction Intermediate
Analogue 2-Carboxyarabinitol 1,5-Bisphosphate
pdb|1BWV|G Chain G, Activated Ribulose 1,5-Bisphosphate CarboxylaseOXYGENASE
(Rubisco) Complexed With The Reaction Intermediate
Analogue 2-Carboxyarabinitol 1,5-Bisphosphate
Length = 493
Score = 24.3 bits (51), Expect = 6.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 127 YGSGLMPYGPYGYGAPGY 144
Y SG++PY GY P Y
Sbjct: 21 YESGVIPYAKMGYWNPDY 38
>pdb|1I7C|A Chain A, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Complexed With Methylglyoxal
Bis- (Guanylhydrazone)
pdb|1I72|A Chain A, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Covalently Bound
5'-Deoxy-5'-[n- Methyl-N-(2-Aminooxyethyl)
Amino]adenosine
pdb|1I79|A Chain A, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Covalently Bound
5'-Deoxy-5'-[(3- Hydrazinopropyl)methylamino]adenosine
pdb|1I7B|A Chain A, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Covalently Bound S-
Adenosylmethionine Methyl Ester
Length = 267
Score = 24.3 bits (51), Expect = 6.5
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 77 PLINRFTNYSAYGSLNGFYNSVDNLNSPMQNG 108
PL+ +YS + S+ F+ S N P G
Sbjct: 26 PLLKLARDYSGFDSIQSFFYSRKNFMKPSHQG 57
>pdb|1JL0|B Chain B, Structure Of A Human S-Adenosylmethionine Decarboxylase
Self-Processing Ester Intermediate And Mechanism Of
Putrescine Stimulation Of Processing As Revealed By The
H243a Mutant
pdb|1JL0|A Chain A, Structure Of A Human S-Adenosylmethionine Decarboxylase
Self-Processing Ester Intermediate And Mechanism Of
Putrescine Stimulation Of Processing As Revealed By The
H243a Mutant
Length = 334
Score = 24.3 bits (51), Expect = 6.5
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 77 PLINRFTNYSAYGSLNGFYNSVDNLNSPMQNG 108
PL+ +YS + S+ F+ S N P G
Sbjct: 93 PLLKLARDYSGFDSIQSFFYSRKNFMKPSHQG 124
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.138 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,082,172
Number of Sequences: 13198
Number of extensions: 49643
Number of successful extensions: 145
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 138
Number of HSP's gapped (non-prelim): 9
length of query: 150
length of database: 2,899,336
effective HSP length: 80
effective length of query: 70
effective length of database: 1,843,496
effective search space: 129044720
effective search space used: 129044720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)