BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644695|ref|NP_206865.1| hypothetical protein
[Helicobacter pylori 26695]
(117 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1CMC|A Chain A, Met Holo-Repressor (Metj) Complex With ... 29 0.12
pdb|1MJO|A Chain A, Methionine Holorepressor Mutant (Q44k) ... 29 0.16
pdb|1I7I|A Chain A, Crystal Structure Of The Ligand Binding... 25 2.3
pdb|1H6P|A Chain A, Dimeristion Domain From Human Trf2 >gi|... 25 3.0
pdb|1FIY| Three-Dimensional Structure Of Phosphoenolpyruv... 25 3.0
pdb|1A8L| Protein Disulfide Oxidoreductase From Archaeon ... 25 3.0
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Co... 24 3.9
pdb|1INP| Inositol Polyphosphate 1-Phosphatase (1-Ptase) ... 24 3.9
pdb|1EZJ|A Chain A, Crystal Structure Of The Multimerizatio... 24 3.9
pdb|1EH1|A Chain A, Ribosome Recycling Factor From Thermus ... 24 3.9
pdb|1KW2|A Chain A, Crystal Structure Of Uncomplexed Vitami... 23 6.6
pdb|1LOT|A Chain A, Crystal Structure Of The Complex Of Act... 23 6.6
pdb|1QHH|B Chain B, Structure Of Dna Helicase With Adpnp 23 6.6
pdb|3PJR|A Chain A, Helicase Substrate Complex >gi|2781090|... 23 6.6
pdb|2PJR|F Chain F, Helicase Product Complex >gi|9257172|pd... 23 6.6
pdb|1DGT|B Chain B, Crystal Structure Of Nad+-Dependent Dna... 23 6.6
pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dn... 23 8.7
pdb|1D9C|A Chain A, Bovine Interferon-Gamma At 2.0 Angstrom... 23 8.7
pdb|1CGJ|I Chain I, Alpha-Chymotrypsinogen Complex With Hum... 23 8.7
pdb|1KQL|A Chain A, Crystal Structure Of The C-Terminal Reg... 23 8.7
>pdb|1CMC|A Chain A, Met Holo-Repressor (Metj) Complex With Corepressor
(Trigonal Form)
pdb|1CMC|B Chain B, Met Holo-Repressor (Metj) Complex With Corepressor
(Trigonal Form)
pdb|1CMB|A Chain A, Met Apo-Repressor (Metj)
pdb|1CMB|B Chain B, Met Apo-Repressor (Metj)
pdb|1CMA|A Chain A, Met Repressor-Operator Complex (Metj)
pdb|1CMA|B Chain B, Met Repressor-Operator Complex (Metj)
Length = 104
Score = 29.3 bits (64), Expect = 0.12
Identities = 19/69 (27%), Positives = 33/69 (47%)
Query: 13 LELRKICDDFEKNAMQDDLGQKLRSDVLEDMLKIAHDLENLEDDTQYQRRIIDEQIEEAK 72
L++ KI D ++L S++L + A + L DD ++ DE E AK
Sbjct: 30 LKVLKILTDERTRRQVNNLRHATNSELLCEAFLHAFTGQPLPDDADLRKERSDEIPEAAK 89
Query: 73 SLMRQIDMN 81
+MR++ +N
Sbjct: 90 EIMREMGIN 98
>pdb|1MJO|A Chain A, Methionine Holorepressor Mutant (Q44k) Plus Corepressor
(S-Adenosyl Methionine) Complexed To The Minimal Met
Consensus Operator With The Central Ta Step Mutated To
At
pdb|1MJO|B Chain B, Methionine Holorepressor Mutant (Q44k) Plus Corepressor
(S-Adenosyl Methionine) Complexed To The Minimal Met
Consensus Operator With The Central Ta Step Mutated To
At
pdb|1MJO|C Chain C, Methionine Holorepressor Mutant (Q44k) Plus Corepressor
(S-Adenosyl Methionine) Complexed To The Minimal Met
Consensus Operator With The Central Ta Step Mutated To
At
pdb|1MJO|D Chain D, Methionine Holorepressor Mutant (Q44k) Plus Corepressor
(S-Adenosyl Methionine) Complexed To The Minimal Met
Consensus Operator With The Central Ta Step Mutated To
At
pdb|1MJL|A Chain A, Methionine Repressor Mutant (Q44k) Complex With The
Corepressor Sam (S-Adenosyl Methionine) From
Escherichia Coli
pdb|1MJL|B Chain B, Methionine Repressor Mutant (Q44k) Complex With The
Corepressor Sam (S-Adenosyl Methionine) From
Escherichia Coli
pdb|1MJK|A Chain A, Methionine Repressor Mutant Aporepressor (Q44k) From
Escherichia Coli
pdb|1MJK|B Chain B, Methionine Repressor Mutant Aporepressor (Q44k) From
Escherichia Coli
pdb|1MJM|A Chain A, Methionine Aporepressor Mutant (Q44k) Complexed To Half
Of The Consensus Operator Sequence
pdb|1MJM|B Chain B, Methionine Aporepressor Mutant (Q44k) Complexed To Half
Of The Consensus Operator Sequence
pdb|1MJQ|A Chain A, Methionine Repressor Mutant (Q44k) Plus Corepressor
(S-Adenosyl Methionine) Complexed To An Altered Met
Consensus Operator Sequence
pdb|1MJQ|B Chain B, Methionine Repressor Mutant (Q44k) Plus Corepressor
(S-Adenosyl Methionine) Complexed To An Altered Met
Consensus Operator Sequence
pdb|1MJQ|C Chain C, Methionine Repressor Mutant (Q44k) Plus Corepressor
(S-Adenosyl Methionine) Complexed To An Altered Met
Consensus Operator Sequence
pdb|1MJQ|D Chain D, Methionine Repressor Mutant (Q44k) Plus Corepressor
(S-Adenosyl Methionine) Complexed To An Altered Met
Consensus Operator Sequence
pdb|1MJQ|G Chain G, Methionine Repressor Mutant (Q44k) Plus Corepressor
(S-Adenosyl Methionine) Complexed To An Altered Met
Consensus Operator Sequence
pdb|1MJQ|H Chain H, Methionine Repressor Mutant (Q44k) Plus Corepressor
(S-Adenosyl Methionine) Complexed To An Altered Met
Consensus Operator Sequence
pdb|1MJQ|I Chain I, Methionine Repressor Mutant (Q44k) Plus Corepressor
(S-Adenosyl Methionine) Complexed To An Altered Met
Consensus Operator Sequence
pdb|1MJQ|J Chain J, Methionine Repressor Mutant (Q44k) Plus Corepressor
(S-Adenosyl Methionine) Complexed To An Altered Met
Consensus Operator Sequence
pdb|1MJ2|A Chain A, Methionine Repressor Mutant (Q44k) Plus Corepressor
(S-Adenosyl Methionine) Complexed To A Consensus
Operator Sequence
pdb|1MJ2|B Chain B, Methionine Repressor Mutant (Q44k) Plus Corepressor
(S-Adenosyl Methionine) Complexed To A Consensus
Operator Sequence
pdb|1MJ2|C Chain C, Methionine Repressor Mutant (Q44k) Plus Corepressor
(S-Adenosyl Methionine) Complexed To A Consensus
Operator Sequence
pdb|1MJ2|D Chain D, Methionine Repressor Mutant (Q44k) Plus Corepressor
(S-Adenosyl Methionine) Complexed To A Consensus
Operator Sequence
pdb|1MJP|A Chain A, Methionine Aporepressor Mutant (Q44k) Complexed To The
Minimal Met Consensus Operator
pdb|1MJP|B Chain B, Methionine Aporepressor Mutant (Q44k) Complexed To The
Minimal Met Consensus Operator
Length = 104
Score = 28.9 bits (63), Expect = 0.16
Identities = 19/69 (27%), Positives = 33/69 (47%)
Query: 13 LELRKICDDFEKNAMQDDLGQKLRSDVLEDMLKIAHDLENLEDDTQYQRRIIDEQIEEAK 72
L++ KI D ++L S++L + A + L DD ++ DE E AK
Sbjct: 30 LKVLKILTDERTRRKVNNLRHATNSELLCEAFLHAFTGQPLPDDADLRKERSDEIPEAAK 89
Query: 73 SLMRQIDMN 81
+MR++ +N
Sbjct: 90 EIMREMGIN 98
>pdb|1I7I|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Human
Ppar-Gamma In Complex With The Agonist Az 242
pdb|1I7I|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Human
Ppar-Gamma In Complex With The Agonist Az 242
Length = 292
Score = 25.0 bits (53), Expect = 2.3
Identities = 12/28 (42%), Positives = 17/28 (59%)
Query: 85 SSEIDRLMREAKEHEREASKRYDEYLKS 112
SS+ID+L E+ + A YD Y+KS
Sbjct: 13 SSDIDQLNPESADLRALAKHLYDSYIKS 40
>pdb|1H6P|A Chain A, Dimeristion Domain From Human Trf2
pdb|1H6P|B Chain B, Dimeristion Domain From Human Trf2
Length = 203
Score = 24.6 bits (52), Expect = 3.0
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 14 ELRKICDDFEKNAMQDDLGQKLRSDVLEDMLK--IAHD-LENLEDDTQYQR--RIIDEQI 68
E K +K+ +D QKLR+D+L + + +AH ++N +T Q+ R ++ +
Sbjct: 128 EFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLAHPVIQNFSYETFQQKMLRFLESHL 187
Query: 69 EEAK 72
++A+
Sbjct: 188 DDAE 191
>pdb|1FIY| Three-Dimensional Structure Of Phosphoenolpyruvate Carboxylase
From Escherichia Coli At 2.8 A Resolution
pdb|1QB4|A Chain A, Crystal Structure Of Mn(2+)-Bound Phosphoenolpyruvate
Carboxylase
Length = 883
Score = 24.6 bits (52), Expect = 3.0
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 34 KLRSDVLEDMLKIAHDLENLE-----DDTQYQRRIIDEQIEEAKSLMRQIDMNFHPSSEI 88
K + ++ ED +K A + +LE T+ RR + ++ E + ++Q+D E
Sbjct: 112 KNQPELSEDTIKKAVESLSLELVLTAHPTEITRRTLIHKMVEVNACLKQLDNKDIADYEH 171
Query: 89 DRLMREAKE 97
++LMR ++
Sbjct: 172 NQLMRRLRQ 180
>pdb|1A8L| Protein Disulfide Oxidoreductase From Archaeon Pyrococcus Furiosus
Length = 226
Score = 24.6 bits (52), Expect = 3.0
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 40 LEDMLKIAHDLENLEDDTQYQRRIIDEQI 68
LED++ ++ + NL D+T+ R ID+ +
Sbjct: 108 LEDIVDVSREETNLMDETKQAIRNIDQDV 136
>pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp.
pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
Length = 592
Score = 24.3 bits (51), Expect = 3.9
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 27 MQDDLGQKLRSDVLEDMLKIAHDLENLEDDTQYQRRIIDEQIEEAKSLMRQ 77
M++D Q L+ LK+ + L++ Q + RI+ +I++ ++ MR+
Sbjct: 535 MENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRR 585
>pdb|1INP| Inositol Polyphosphate 1-Phosphatase (1-Ptase)
(Inositol-1,4-Bisphosphate 1-Phosphatase)
(E.C.3.1.3.57) Complexed With Magnesium
Length = 400
Score = 24.3 bits (51), Expect = 3.9
Identities = 10/36 (27%), Positives = 20/36 (54%)
Query: 37 SDVLEDMLKIAHDLENLEDDTQYQRRIIDEQIEEAK 72
SD+L+++L+++ N+ + Q + IEE K
Sbjct: 2 SDILQELLRVSEKAANIARACRQQETLFQLLIEEKK 37
>pdb|1EZJ|A Chain A, Crystal Structure Of The Multimerization Domain Of The
Phosphoprotein From Sendai Virus
Length = 115
Score = 24.3 bits (51), Expect = 3.9
Identities = 13/43 (30%), Positives = 25/43 (57%), Gaps = 4/43 (9%)
Query: 72 KSLMRQIDMNFHPSSEIDRLMREAKEHEREASKRYDEYLKSKD 114
KS R++D N ++ + ++E+ E R+ KR+ EY K ++
Sbjct: 62 KSSARKVDEN----KQLLKQIQESVESFRDIYKRFSEYQKEQN 100
>pdb|1EH1|A Chain A, Ribosome Recycling Factor From Thermus Thermophilus
Length = 185
Score = 24.3 bits (51), Expect = 3.9
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 33 QKLRSDVLEDMLKIAHDLENLEDDTQYQ----RRIIDEQIEEAKSL 74
+ +R + L+ + K+A +L ED+T+ ++I DE I +A L
Sbjct: 130 RNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQL 175
>pdb|1KW2|A Chain A, Crystal Structure Of Uncomplexed Vitamin D-Binding Protein
pdb|1KW2|B Chain B, Crystal Structure Of Uncomplexed Vitamin D-Binding Protein
pdb|1KXP|D Chain D, Crystal Structure Of Human Vitamin D-Binding Protein In
Complex With Skeletal Actin
Length = 458
Score = 23.5 bits (49), Expect = 6.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 31 LGQKLRSDVLEDMLKIAHDLENL 53
L QK+ + LED+L +A D+ N+
Sbjct: 223 LAQKVPTADLEDVLPLAEDITNI 245
>pdb|1LOT|A Chain A, Crystal Structure Of The Complex Of Actin With Vitamin D-
Binding Protein
pdb|1J7E|B Chain B, A Structural Basis For The Unique Binding Features Of The
Human Vitamin D-Binding Protein
pdb|1J7E|A Chain A, A Structural Basis For The Unique Binding Features Of The
Human Vitamin D-Binding Protein
pdb|1J78|B Chain B, Crystallographic Analysis Of The Human Vitamin D Binding
Protein
pdb|1J78|A Chain A, Crystallographic Analysis Of The Human Vitamin D Binding
Protein
Length = 458
Score = 23.5 bits (49), Expect = 6.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 31 LGQKLRSDVLEDMLKIAHDLENL 53
L QK+ + LED+L +A D+ N+
Sbjct: 223 LAQKVPTADLEDVLPLAEDITNI 245
>pdb|1QHH|B Chain B, Structure Of Dna Helicase With Adpnp
Length = 273
Score = 23.5 bits (49), Expect = 6.6
Identities = 23/78 (29%), Positives = 40/78 (50%), Gaps = 16/78 (20%)
Query: 36 RSDVLEDMLKIA------------HDLENLEDDTQYQRRIIDEQIEEAKSLMRQIDMNFH 83
+S V+E+ML A +D + ++D Y R I + ++ SL+R I++
Sbjct: 196 QSRVMEEMLLKANIPYQIVGGLKFYDRKEIKDILAYLRVIANP--DDDLSLLRIINVPKR 253
Query: 84 P--SSEIDRLMREAKEHE 99
+S ID+L+R A +HE
Sbjct: 254 GIGASTIDKLVRYAADHE 271
>pdb|3PJR|A Chain A, Helicase Substrate Complex
pdb|1PJR| Structure Of Dna Helicase
pdb|1QHG|A Chain A, Structure Of Dna Helicase Mutant With Adpnp
Length = 724
Score = 23.5 bits (49), Expect = 6.6
Identities = 23/78 (29%), Positives = 40/78 (50%), Gaps = 16/78 (20%)
Query: 36 RSDVLEDMLKIA------------HDLENLEDDTQYQRRIIDEQIEEAKSLMRQIDMNFH 83
+S V+E+ML A +D + ++D Y R I + ++ SL+R I++
Sbjct: 363 QSRVMEEMLLKANIPYQIVGGLKFYDRKEIKDILAYLRVIANP--DDDLSLLRIINVPKR 420
Query: 84 P--SSEIDRLMREAKEHE 99
+S ID+L+R A +HE
Sbjct: 421 GIGASTIDKLVRYAADHE 438
>pdb|2PJR|F Chain F, Helicase Product Complex
pdb|2PJR|A Chain A, Helicase Product Complex
Length = 548
Score = 23.5 bits (49), Expect = 6.6
Identities = 23/78 (29%), Positives = 40/78 (50%), Gaps = 16/78 (20%)
Query: 36 RSDVLEDMLKIA------------HDLENLEDDTQYQRRIIDEQIEEAKSLMRQIDMNFH 83
+S V+E+ML A +D + ++D Y R I + ++ SL+R I++
Sbjct: 363 QSRVMEEMLLKANIPYQIVGGLKFYDRKEIKDILAYLRVIANP--DDDLSLLRIINVPKR 420
Query: 84 P--SSEIDRLMREAKEHE 99
+S ID+L+R A +HE
Sbjct: 421 GIGASTIDKLVRYAADHE 438
>pdb|1DGT|B Chain B, Crystal Structure Of Nad+-Dependent Dna Ligase
pdb|1DGS|A Chain A, Crystal Structure Of Nad+-Dependent Dna Ligase From T.
Filiformis
pdb|1DGS|B Chain B, Crystal Structure Of Nad+-Dependent Dna Ligase From T.
Filiformis
pdb|1DGT|A Chain A, Crystal Structure Of Nad+-Dependent Dna Ligase
Length = 667
Score = 23.5 bits (49), Expect = 6.6
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 12/55 (21%)
Query: 67 QIEEAKSLMRQIDMNFH-------PSSEIDRLMREAKEHEREASKRYDEYLKSKD 114
+I E + L+R + ++ +E DRL+RE KE E +R+ E+ KS D
Sbjct: 9 RINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELE----ERFPEF-KSPD 58
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
Length = 780
Score = 23.1 bits (48), Expect = 8.7
Identities = 18/62 (29%), Positives = 31/62 (49%), Gaps = 5/62 (8%)
Query: 33 QKLRSDVLEDMLKIAHDLENLEDDTQYQRRIIDEQIEEAKSL----MRQIDMNFHPSSEI 88
+KLRS L D L+ + + +L D QY + + + ++ K L +R + + F P
Sbjct: 93 EKLRSWFLIDYLECSGEEVDLSTDIQYAKGVGPNRKKKLKKLGIETLRDL-LEFFPRDYE 151
Query: 89 DR 90
DR
Sbjct: 152 DR 153
>pdb|1D9C|A Chain A, Bovine Interferon-Gamma At 2.0 Angstroms
pdb|1D9G|A Chain A, Bovine Interferon-Gamma At 2.9 Angstroms
pdb|1D9C|B Chain B, Bovine Interferon-Gamma At 2.0 Angstroms
pdb|1D9G|B Chain B, Bovine Interferon-Gamma At 2.9 Angstroms
Length = 121
Score = 23.1 bits (48), Expect = 8.7
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 27 MQDDLGQKL---RSDVLEDMLKIAHDLENLEDDTQYQRRIIDEQIEEAKSL 74
++ D+ QK S+ LED K+ ++ DD Q QR+ I+E I+ L
Sbjct: 73 IKQDMFQKFLNGSSEKLEDFKKL---IQIPVDDLQIQRKAINELIKVMNDL 120
>pdb|1CGJ|I Chain I, Alpha-Chymotrypsinogen Complex With Human Pancreatic
Secretory Trypsin Inhibitor Variant 4
Length = 56
Score = 23.1 bits (48), Expect = 8.7
Identities = 8/12 (66%), Positives = 9/12 (74%)
Query: 8 LEGCTLELRKIC 19
L GCTLE R +C
Sbjct: 13 LNGCTLEYRPVC 24
>pdb|1KQL|A Chain A, Crystal Structure Of The C-Terminal Region Of Striated
Muscle Alpha-Tropomyosin At 2.7 Angstrom Resolution
pdb|1KQL|B Chain B, Crystal Structure Of The C-Terminal Region Of Striated
Muscle Alpha-Tropomyosin At 2.7 Angstrom Resolution
Length = 56
Score = 23.1 bits (48), Expect = 8.7
Identities = 13/44 (29%), Positives = 19/44 (42%)
Query: 1 MFSHEVYLEGCTLELRKICDDFEKNAMQDDLGQKLRSDVLEDML 44
+ S +LE L+K+ DD E L K S+ L+ L
Sbjct: 7 LLSKNYHLENEVARLKKLVDDLEDELYAQKLKYKAISEELDHAL 50
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.315 0.133 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 619,689
Number of Sequences: 13198
Number of extensions: 21340
Number of successful extensions: 58
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 48
Number of HSP's gapped (non-prelim): 20
length of query: 117
length of database: 2,899,336
effective HSP length: 76
effective length of query: 41
effective length of database: 1,896,288
effective search space: 77747808
effective search space used: 77747808
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)