BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645263|ref|NP_207433.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(226 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1KOR|B Chain B, Crystal Structure Of Thermus Thermophil... 27 1.5
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna ... 25 5.6
pdb|2FRV|A Chain A, Crystal Structure Of The Oxidized Form ... 25 9.6
pdb|1FRV|A Chain A, Crystal Structure Of The Oxidized Form ... 25 9.6
>pdb|1KOR|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Inhibitors
pdb|1KOR|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Inhibitors
pdb|1KOR|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Inhibitors
pdb|1KH1|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase
pdb|1KH2|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Atp
pdb|1KH1|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase
pdb|1KH2|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Atp
pdb|1KH1|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase
pdb|1KH2|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Atp
pdb|1KOR|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Inhibitors
pdb|1KH1|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase
pdb|1KH2|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Atp
Length = 400
Score = 27.3 bits (59), Expect = 1.5
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 7 VIGFSGGQDSTTLAVWAKKRFK-KVCLVGFDYAQKHSVELECAQKIASLLQLPYEIIPLD 65
V+ +SGG D++ + W K+ ++ +V D Q VE E +K +L + I LD
Sbjct: 4 VLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQGEEVE-EAREK--ALRTGASKAIALD 60
Query: 66 FLENITRSALF 76
E R +F
Sbjct: 61 LKEEFVRDFVF 71
>pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 25.4 bits (54), Expect = 5.6
Identities = 15/67 (22%), Positives = 28/67 (41%)
Query: 142 KSIEHALNLGSNTAIKILTPLMFLNKAQEFQMAKDLGVLDLVIKETHTCYQGERKILHAY 201
KS+E + + SN L + + + + V+D + + G+ I HA
Sbjct: 823 KSLEAKVTIASNDKFNASEFLTSFDALHQLFIVSQVKVVDKLDDQATAYEHGDIVIEHAD 882
Query: 202 GYGCDKC 208
G C++C
Sbjct: 883 GEKCERC 889
>pdb|2FRV|A Chain A, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|C Chain C, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|E Chain E, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|G Chain G, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|I Chain I, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|S Chain S, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
Length = 264
Score = 24.6 bits (52), Expect = 9.6
Identities = 13/45 (28%), Positives = 21/45 (45%)
Query: 123 LGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNK 167
LGV + +G P +F+ ++ H L G K P+MF +
Sbjct: 138 LGVKAINIAGCPPNPMNFVGTVVHLLTKGMPELDKQGRPVMFFGE 182
>pdb|1FRV|A Chain A, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|1FRV|C Chain C, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
Length = 264
Score = 24.6 bits (52), Expect = 9.6
Identities = 13/45 (28%), Positives = 21/45 (45%)
Query: 123 LGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNK 167
LGV + +G P +F+ ++ H L G K P+MF +
Sbjct: 138 LGVKAINIAGCPPNPMNFVGTVVHLLTKGMPELDKQGRPVMFFGE 182
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.137 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,311,199
Number of Sequences: 13198
Number of extensions: 50036
Number of successful extensions: 76
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 73
Number of HSP's gapped (non-prelim): 4
length of query: 226
length of database: 2,899,336
effective HSP length: 85
effective length of query: 141
effective length of database: 1,777,506
effective search space: 250628346
effective search space used: 250628346
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)