BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645267|ref|NP_207437.1| glutamyl-tRNA synthetase
(gltX) [Helicobacter pylori 26695]
(439 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1G59|A Chain A, Glutamyl-Trna Synthetase Complexed With... 176 5e-45
pdb|1QTQ|A Chain A, Glutaminyl-Trna Synthetase Complexed Wi... 37 0.003
pdb|1QRT|A Chain A, Glutaminyl-Trna Synthetase Mutant D235g... 37 0.003
pdb|1QRS|A Chain A, Glutaminyl-Trna Synthetase Mutant D235n... 37 0.003
pdb|1EXD|A Chain A, Crystal Structure Of A Tight-Binding Gl... 37 0.003
pdb|1QRU|A Chain A, Glutaminyl-Trna Synthetase Mutant I129t... 37 0.003
pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor >gi|1697482... 31 0.32
pdb|1QKN|A Chain A, Rat Oestrogen Receptor Beta Ligand-Bind... 28 1.6
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus The... 27 4.6
>pdb|1G59|A Chain A, Glutamyl-Trna Synthetase Complexed With Trna(Glu).
pdb|1G59|C Chain C, Glutamyl-Trna Synthetase Complexed With Trna(Glu).
pdb|1GLN| Mol_id: 1; Molecule: Glutamyl-Trna Synthetase; Chain: Null
Length = 468
Score = 176 bits (446), Expect = 5e-45
Identities = 123/386 (31%), Positives = 202/386 (51%), Gaps = 34/386 (8%)
Query: 3 RFAPSPTGDMHIGNLRAAIFNYIVAKQQYKPFLIRIEDTDKERNIEGKDQEILEILKLMG 62
R APSPTGD H+G A+FNY A++ F++RIEDTD+ R + G ++ IL LK +G
Sbjct: 5 RIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALKWLG 64
Query: 63 ISWDK---------LVYQSHNIDYHREMAEKLLKENKAFYCYASAEFLER-EKEKAKNEK 112
+S+D+ QS + +++ AE+LLK A+ + + E LE+ KEK +
Sbjct: 65 LSYDEGPDVAAPTGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDG 124
Query: 113 RPFRYSDEWATLEKDKHHAPVVRLKAPNHAVS-FNDAIKKEVKFEPDELDSFVLLRQDKS 171
R E A + V+RLK P + D ++ V ++ E+ VLL+ D
Sbjct: 125 RARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPDVVLLKSDGY 184
Query: 172 PTYNFACACDDLLYKISLIIRGEDHVSNTPKQILIQQALGSNDPIVYAHLPIILDEVSGK 231
PTY+ A DD L ++ +IR E+ + +TP +L+ +A G P Y H+P +L
Sbjct: 185 PTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFY-HMP-LLRNPDKT 242
Query: 232 KMSKRDEASSVKWLLNQGFLPVAIANYLITIGNKVP--KEVFSLDEAIEWFSLENLSSSP 289
K+SKR +S+ W +GFLP A+ NYL +G +P +E+F+L+E I+ F+ E +S
Sbjct: 243 KISKRKSHTSLDWYKAEGFLPEALRNYLCLMGFSMPDGREIFTLEEFIQAFTWERVSLGG 302
Query: 290 AHFNLKYLKHLNHEHLKLLDDDKLLELTSIKDKNLLGLLRLFIEECGTLLE----LREKI 345
F+L+ L+ +N ++++ ++L L + ++ ++ F+ E G E LR +
Sbjct: 303 PVFDLEKLRWMNGKYIR-----EVLSLEEVAER-----VKPFLREAGLSWESEAYLRRAV 352
Query: 346 SLFLEPKDIVKTYENEDFKERCLALF 371
L D +K +F E+ LF
Sbjct: 353 ELMRPRFDTLK-----EFPEKARYLF 373
>pdb|1QTQ|A Chain A, Glutaminyl-Trna Synthetase Complexed With Trna And An
Amino Acid Analog
pdb|1GTR|A Chain A, Glutaminyl-Trna Synthetase (E.C.6.1.1.18) Complexed With
Trna And Atp (-8 Degrees C)
pdb|1GTS|A Chain A, Glutaminyl-Trna Synthetase (E.C.6.1.1.18) Complexed With
Trna And Amp (8 Degrees C)
pdb|1GSG|P Chain P, Glutaminyl-TRNA Synthetase (GlnRS) Complex With tRNAGln
And ATP
Length = 553
Score = 37.4 bits (85), Expect = 0.003
Identities = 23/91 (25%), Positives = 42/91 (45%), Gaps = 1/91 (1%)
Query: 3 RFAPSPTGDMHIGNLRAAIFNYIVAKQQYKPFLIRIEDTDKERNIEGKDQEILEILKLMG 62
RF P P G +HIG+ ++ N+ +A+ +R +DT+ + + I ++ +G
Sbjct: 30 RFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLG 89
Query: 63 ISWDKLV-YQSHNIDYHREMAEKLLKENKAF 92
W V Y S D A +L+ + A+
Sbjct: 90 FHWSGNVRYSSDYFDQLHAYAIELINKGLAY 120
>pdb|1QRT|A Chain A, Glutaminyl-Trna Synthetase Mutant D235g Complexed With
Glutamine Transfer Rna
Length = 553
Score = 37.4 bits (85), Expect = 0.003
Identities = 23/91 (25%), Positives = 42/91 (45%), Gaps = 1/91 (1%)
Query: 3 RFAPSPTGDMHIGNLRAAIFNYIVAKQQYKPFLIRIEDTDKERNIEGKDQEILEILKLMG 62
RF P P G +HIG+ ++ N+ +A+ +R +DT+ + + I ++ +G
Sbjct: 30 RFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLG 89
Query: 63 ISWDKLV-YQSHNIDYHREMAEKLLKENKAF 92
W V Y S D A +L+ + A+
Sbjct: 90 FHWSGNVRYSSDYFDQLHAYAIELINKGLAY 120
>pdb|1QRS|A Chain A, Glutaminyl-Trna Synthetase Mutant D235n Complexed With
Glutamine Transfer Rna
Length = 553
Score = 37.4 bits (85), Expect = 0.003
Identities = 23/91 (25%), Positives = 42/91 (45%), Gaps = 1/91 (1%)
Query: 3 RFAPSPTGDMHIGNLRAAIFNYIVAKQQYKPFLIRIEDTDKERNIEGKDQEILEILKLMG 62
RF P P G +HIG+ ++ N+ +A+ +R +DT+ + + I ++ +G
Sbjct: 30 RFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLG 89
Query: 63 ISWDKLV-YQSHNIDYHREMAEKLLKENKAF 92
W V Y S D A +L+ + A+
Sbjct: 90 FHWSGNVRYSSDYFDQLHAYAIELINKGLAY 120
>pdb|1EXD|A Chain A, Crystal Structure Of A Tight-Binding Glutamine Trna Bound
To Glutamine Aminoacyl Trna Synthetase
pdb|1EUQ|A Chain A, Crystal Structure Of Glutaminyl-Trna Synthetase Complexed
With A Trna-Gln Mutant And An Active-Site Inhibitor
pdb|1EUY|A Chain A, Glutaminyl-Trna Synthetase Complexed With A Trna Mutant
And An Active Site Inhibitor
Length = 548
Score = 37.4 bits (85), Expect = 0.003
Identities = 23/91 (25%), Positives = 42/91 (45%), Gaps = 1/91 (1%)
Query: 3 RFAPSPTGDMHIGNLRAAIFNYIVAKQQYKPFLIRIEDTDKERNIEGKDQEILEILKLMG 62
RF P P G +HIG+ ++ N+ +A+ +R +DT+ + + I ++ +G
Sbjct: 31 RFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLG 90
Query: 63 ISWDKLV-YQSHNIDYHREMAEKLLKENKAF 92
W V Y S D A +L+ + A+
Sbjct: 91 FHWSGNVRYSSDYFDQLHAYAIELINKGLAY 121
>pdb|1QRU|A Chain A, Glutaminyl-Trna Synthetase Mutant I129t Complexed With
Glutamine Transfer Rna
Length = 553
Score = 37.4 bits (85), Expect = 0.003
Identities = 23/91 (25%), Positives = 42/91 (45%), Gaps = 1/91 (1%)
Query: 3 RFAPSPTGDMHIGNLRAAIFNYIVAKQQYKPFLIRIEDTDKERNIEGKDQEILEILKLMG 62
RF P P G +HIG+ ++ N+ +A+ +R +DT+ + + I ++ +G
Sbjct: 30 RFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLG 89
Query: 63 ISWDKLV-YQSHNIDYHREMAEKLLKENKAF 92
W V Y S D A +L+ + A+
Sbjct: 90 FHWSGNVRYSSDYFDQLHAYAIELINKGLAY 120
>pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor
pdb|1J7N|A Chain A, Anthrax Toxin Lethal Factor
pdb|1JKY|A Chain A, Crystal Structure Of The Anthrax Lethal Factor (Lf): Wild-
Type Lf Complexed With The N-Terminal Sequence Of Mapkk2
Length = 776
Score = 30.8 bits (68), Expect = 0.32
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 32/167 (19%)
Query: 23 NYIVAKQQYKPFLI------RIEDTDKERNIEGKDQEIL--EILKLMGISWDKL------ 68
+Y+ AK+ Y+P L+ +E+T+K N+ + +IL +IL + + K
Sbjct: 117 HYVYAKEGYEPVLVIQSSEDYVENTEKALNVYYEIGKILSRDILSKINQPYQKFLDVLNT 176
Query: 69 VYQSHNIDYHREMAEKLLKENKAFYCYASAEFLEREKEKAKNE-KRPFRYSDEWATLEKD 127
+ + + D + LKE+ + S EFLE+ + + + F Y E
Sbjct: 177 IKNASDSDGQDLLFTNQLKEHPTDF---SVEFLEQNSNEVQEVFAKAFAYYIE------- 226
Query: 128 KHHAPVVRLKAP---NHAVSFNDAIKKEVKFEPDEL-DSFVLLRQDK 170
H V++L AP N+ FN+ +E+ +EL D +L R +K
Sbjct: 227 PQHRDVLQLYAPEAFNYMDKFNE---QEINLSLEELKDQRMLSRYEK 270
>pdb|1QKN|A Chain A, Rat Oestrogen Receptor Beta Ligand-Binding Domain In
Complex With Antagonist Raloxifene
pdb|1HJ1|A Chain A, Rat Oestrogen Receptor Beta Ligand-Binding Domain In
Complex With Pure Antioestrogen Ici164,384
Length = 255
Score = 28.5 bits (62), Expect = 1.6
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 245 LLNQGFLPVAIANYLITIGNKVPKEVFSLDEAIEW-FSLENLSSSPAHFNLKYLKHLNHE 303
LLN P+A AN K+ + ++ +A+ W + +SS L L L
Sbjct: 151 LLNSSMYPLASANQEAESSRKLTHLLNAVTDALVWVIAKSGISSQQQSVRLANLLML-LS 209
Query: 304 HLKLLDDDKLLELTSIKDKNLLGLLRLFIE 333
H++ + + + L S+K KN++ + L +E
Sbjct: 210 HVRHISNKGMEHLLSMKCKNVVPVYDLLLE 239
>pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
Length = 878
Score = 26.9 bits (58), Expect = 4.6
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 20/84 (23%)
Query: 6 PSPTGDMHIGNLRAAIFNYIVAK----QQYK--------PFLIRIEDTDKERNIEGKD-- 51
P P+GD+H+G+L+ ++A+ Q Y+ F + E+ + + KD
Sbjct: 42 PYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWT 101
Query: 52 ----QEILEILKLMGI--SWDKLV 69
++ E L+LMGI WD+ V
Sbjct: 102 YANIRQAKESLRLMGILYDWDREV 125
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.138 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,555,310
Number of Sequences: 13198
Number of extensions: 106911
Number of successful extensions: 303
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 293
Number of HSP's gapped (non-prelim): 10
length of query: 439
length of database: 2,899,336
effective HSP length: 91
effective length of query: 348
effective length of database: 1,698,318
effective search space: 591014664
effective search space used: 591014664
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)