BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645268|ref|NP_207438.1| conserved hypothetical
integral membrane protein [Helicobacter pylori 26695]
(97 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1QQJ|A Chain A, Crystal Structure Of Mouse Fumarylaceto... 25 1.4
pdb|1HYO|B Chain B, Crystal Structure Of Fumarylacetoacetat... 25 1.4
pdb|1QCO|B Chain B, Crystal Structure Of Fumarylacetoacetat... 25 1.4
pdb|1NTD| Structure Of Alcaligenes Faecalis Nitrite Reduc... 23 5.2
pdb|1ET8|A Chain A, Crystal Structure Of Nitrite Reductase ... 23 5.2
pdb|1G60|A Chain A, Crystal Structure Of Methyltransferase ... 23 5.2
pdb|1ET7|A Chain A, Crystal Structure Of Nitrite Reductase ... 23 5.2
pdb|1AS7|A Chain A, Structure Of Alcaligenes Faecalis Nitri... 23 5.2
pdb|1J9Q|A Chain A, Crystal Structure Of Nitrite Soaked Oxi... 23 5.2
pdb|1QCN|B Chain B, Crystal Structure Of Fumarylacetoacetat... 23 6.8
>pdb|1QQJ|A Chain A, Crystal Structure Of Mouse Fumarylacetoacetate Hydrolase
Refined At 1.55 Angstrom Resolution
pdb|1QQJ|B Chain B, Crystal Structure Of Mouse Fumarylacetoacetate Hydrolase
Refined At 1.55 Angstrom Resolution
Length = 419
Score = 25.0 bits (53), Expect = 1.4
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 19 TIYMWIVIIYSLISFVQPNPNNPIMQILARLC--EPVFYFLRSRFKLVFNGLDFSPLVVV 76
TI W+V + +L+ FV PNP + L LC +P + + L G+ + +
Sbjct: 258 TISPWVVPMDALMPFVVPNPKQD-PKPLPYLCHSQPYTFDINLSVSLKGEGMSQAATICR 316
Query: 77 IVLKFLDLTLIQWL 90
K + T++Q L
Sbjct: 317 SNFKHMYWTMLQQL 330
>pdb|1HYO|B Chain B, Crystal Structure Of Fumarylacetoacetate Hydrolase
Complexed With
4-(Hydroxymethylphosphinoyl)-3-Oxo-Butanoic Acid
pdb|1HYO|A Chain A, Crystal Structure Of Fumarylacetoacetate Hydrolase
Complexed With
4-(Hydroxymethylphosphinoyl)-3-Oxo-Butanoic Acid
Length = 421
Score = 25.0 bits (53), Expect = 1.4
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 19 TIYMWIVIIYSLISFVQPNPNNPIMQILARLC--EPVFYFLRSRFKLVFNGLDFSPLVVV 76
TI W+V + +L+ FV PNP + L LC +P + + L G+ + +
Sbjct: 260 TISPWVVPMDALMPFVVPNPKQD-PKPLPYLCHSQPYTFDINLSVSLKGEGMSQAATICR 318
Query: 77 IVLKFLDLTLIQWL 90
K + T++Q L
Sbjct: 319 SNFKHMYWTMLQQL 332
>pdb|1QCO|B Chain B, Crystal Structure Of Fumarylacetoacetate Hydrolase
Complexed With Fumarate And Acetoacetate
pdb|1QCO|A Chain A, Crystal Structure Of Fumarylacetoacetate Hydrolase
Complexed With Fumarate And Acetoacetate
Length = 423
Score = 25.0 bits (53), Expect = 1.4
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 19 TIYMWIVIIYSLISFVQPNPNNPIMQILARLC--EPVFYFLRSRFKLVFNGLDFSPLVVV 76
TI W+V + +L+ FV PNP + L LC +P + + L G+ + +
Sbjct: 260 TISPWVVPMDALMPFVVPNPKQD-PKPLPYLCHSQPYTFDINLSVSLKGEGMSQAATICR 318
Query: 77 IVLKFLDLTLIQWL 90
K + T++Q L
Sbjct: 319 SNFKHMYWTMLQQL 332
>pdb|1NTD| Structure Of Alcaligenes Faecalis Nitrite Reductase Mutant M150e
That Contains Zinc
Length = 343
Score = 23.1 bits (48), Expect = 5.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 63 LVFNGLDFSPLVVVIVLKFLDLTLI 87
+ FNG PL+VV +L+LTLI
Sbjct: 65 MAFNGTVPGPLMVVHQDDYLELTLI 89
>pdb|1ET8|A Chain A, Crystal Structure Of Nitrite Reductase His255asn Mutant
From Alcaligenes Faecalis
pdb|1J9S|A Chain A, Crystal Structure Of Nitrite Soaked Oxidized H255n Afnir
pdb|1J9S|B Chain B, Crystal Structure Of Nitrite Soaked Oxidized H255n Afnir
pdb|1J9S|C Chain C, Crystal Structure Of Nitrite Soaked Oxidized H255n Afnir
pdb|1J9T|A Chain A, Crystal Structure Of Nitrite Soaked Reduced H255n Afnir
pdb|1J9T|B Chain B, Crystal Structure Of Nitrite Soaked Reduced H255n Afnir
pdb|1J9T|C Chain C, Crystal Structure Of Nitrite Soaked Reduced H255n Afnir
Length = 341
Score = 23.1 bits (48), Expect = 5.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 63 LVFNGLDFSPLVVVIVLKFLDLTLI 87
+ FNG PL+VV +L+LTLI
Sbjct: 59 MAFNGTVPGPLMVVHQDDYLELTLI 83
>pdb|1G60|A Chain A, Crystal Structure Of Methyltransferase Mboii (Moraxella
Bovis)
pdb|1G60|B Chain B, Crystal Structure Of Methyltransferase Mboii (Moraxella
Bovis)
Length = 260
Score = 23.1 bits (48), Expect = 5.2
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 7/32 (21%)
Query: 36 PNPNNPIMQILARLCEPVFYFLRSRFKLVFNG 67
PNPN RLC V++F R K NG
Sbjct: 162 PNPNG-------RLCGEVWHFSSQRHKEKVNG 186
>pdb|1ET7|A Chain A, Crystal Structure Of Nitrite Reductase His255asp Mutant
From Alcaligenes Faecalis S-6
Length = 341
Score = 23.1 bits (48), Expect = 5.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 63 LVFNGLDFSPLVVVIVLKFLDLTLI 87
+ FNG PL+VV +L+LTLI
Sbjct: 59 MAFNGTVPGPLMVVHQDDYLELTLI 83
>pdb|1AS7|A Chain A, Structure Of Alcaligenes Faecalis Nitrite Reductase At
Cryo Temperature
pdb|1AS7|B Chain B, Structure Of Alcaligenes Faecalis Nitrite Reductase At
Cryo Temperature
pdb|1AS7|C Chain C, Structure Of Alcaligenes Faecalis Nitrite Reductase At
Cryo Temperature
pdb|1AS8|A Chain A, Structure Of Nitrite Bound To Reduced Alcaligenes
Faecalis Nitrite Reductase At Cryo Temperature
pdb|1AS8|B Chain B, Structure Of Nitrite Bound To Reduced Alcaligenes
Faecalis Nitrite Reductase At Cryo Temperature
pdb|1AS8|C Chain C, Structure Of Nitrite Bound To Reduced Alcaligenes
Faecalis Nitrite Reductase At Cryo Temperature
pdb|1AS6|B Chain B, Structure Of Nitrite Bound To Oxidized Alcaligenes
Faecalis Nitrite Reductase At Cryo Temperature
pdb|1AS6|A Chain A, Structure Of Nitrite Bound To Oxidized Alcaligenes
Faecalis Nitrite Reductase At Cryo Temperature
pdb|1AS6|C Chain C, Structure Of Nitrite Bound To Oxidized Alcaligenes
Faecalis Nitrite Reductase At Cryo Temperature
pdb|2AFN|A Chain A, Structure Of Alcaligenes Faecalis Nitrite Reductase And
A Copper Site Mutant, M150e, That Contains Zinc
pdb|2AFN|B Chain B, Structure Of Alcaligenes Faecalis Nitrite Reductase And
A Copper Site Mutant, M150e, That Contains Zinc
pdb|2AFN|C Chain C, Structure Of Alcaligenes Faecalis Nitrite Reductase And
A Copper Site Mutant, M150e, That Contains Zinc
pdb|1AQ8|A Chain A, Structure Of Alcaligenes Faecalis Nitrite Reductase
Reduced With Ascorbate
pdb|1AQ8|B Chain B, Structure Of Alcaligenes Faecalis Nitrite Reductase
Reduced With Ascorbate
pdb|1AQ8|C Chain C, Structure Of Alcaligenes Faecalis Nitrite Reductase
Reduced With Ascorbate
Length = 343
Score = 23.1 bits (48), Expect = 5.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 63 LVFNGLDFSPLVVVIVLKFLDLTLI 87
+ FNG PL+VV +L+LTLI
Sbjct: 65 MAFNGTVPGPLMVVHQDDYLELTLI 89
>pdb|1J9Q|A Chain A, Crystal Structure Of Nitrite Soaked Oxidized D98n Afnir
pdb|1J9Q|B Chain B, Crystal Structure Of Nitrite Soaked Oxidized D98n Afnir
pdb|1J9Q|C Chain C, Crystal Structure Of Nitrite Soaked Oxidized D98n Afnir
pdb|1ET5|A Chain A, Crystal Structure Of Nitrite Reductase Asp98asn Mutant
From Alcaligenes Faecalis S-6
pdb|1J9R|A Chain A, Crystal Structure Of Nitrite Soaked Reduced D98n Afnir
pdb|1J9R|B Chain B, Crystal Structure Of Nitrite Soaked Reduced D98n Afnir
pdb|1J9R|C Chain C, Crystal Structure Of Nitrite Soaked Reduced D98n Afnir
Length = 341
Score = 23.1 bits (48), Expect = 5.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 63 LVFNGLDFSPLVVVIVLKFLDLTLI 87
+ FNG PL+VV +L+LTLI
Sbjct: 59 MAFNGTVPGPLMVVHQDDYLELTLI 83
>pdb|1QCN|B Chain B, Crystal Structure Of Fumarylacetoacetate Hydrolase
pdb|1QCN|A Chain A, Crystal Structure Of Fumarylacetoacetate Hydrolase
Length = 421
Score = 22.7 bits (47), Expect = 6.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 19 TIYMWIVIIYSLISFVQPNP 38
TI W+V +L FV PNP
Sbjct: 260 TISPWVVPXDALXPFVVPNP 279
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.337 0.149 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 459,223
Number of Sequences: 13198
Number of extensions: 13780
Number of successful extensions: 40
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 10
length of query: 97
length of database: 2,899,336
effective HSP length: 73
effective length of query: 24
effective length of database: 1,935,882
effective search space: 46461168
effective search space used: 46461168
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 46 (22.3 bits)