BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645269|ref|NP_207439.1| soluble lytic murein
transglycosylase (slt) [Helicobacter pylori 26695]
(560 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1QSA|A Chain A, Crystal Structure Of The 70 Kda Soluble... 67 4e-12
pdb|1SLY| Complex Of The 70-Kda Soluble Lytic Transglycos... 64 6e-11
pdb|1JSD|B Chain B, Crystal Structure Of Swine H9 Haemagglu... 32 0.24
pdb|1II7|A Chain A, Crystal Structure Of P. Furiosus Mre11 ... 29 1.6
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gram... 28 2.7
pdb|1DUS|A Chain A, Mj0882-A Hypothetical Protein From M. J... 27 6.0
>pdb|1QSA|A Chain A, Crystal Structure Of The 70 Kda Soluble Lytic
Transglycosylase Slt70 From Escherichia Coli At 1.65
Angstroms Resolution
pdb|1QTE|A Chain A, Crystal Structure Of The 70 Kda Soluble Lytic
Transglycosylase Slt70 From Escherichia Coli At 1.90 A
Resolution In Complex With A 1,6-Anhydromurotripeptide
Length = 618
Score = 67.4 bits (163), Expect = 4e-12
Identities = 48/142 (33%), Positives = 70/142 (48%), Gaps = 7/142 (4%)
Query: 403 KAMAYAIARQESFLLPAVISRSFALGLMQIMPFNVGPFAKSLGMDNIDL-NDMFNPNIAL 461
++ A AIARQES P V S A GLMQIMP K + + +P +
Sbjct: 468 QSYAMAIARQESAWNPKVKSPVGASGLMQIMPGTATHTVKMFSIPGYSSPGQLLDPETNI 527
Query: 462 KFGNYYLNHLKKEF-NHPLFVAYAYNAGPGFLRRWLESSKRFKEKNHFEPWLSMELMPYS 520
G YL ++ ++F N+ +F + AYNAGPG +R WL +S + +E +P+S
Sbjct: 528 NIGTSYLQYVYQQFGNNRIFSSAAYNAGPGRVRTWLGNS-----AGRIDAVAFVESIPFS 582
Query: 521 ETRMYGFRVMLNYLIYQEIFGN 542
ETR Y V+ Y+ G+
Sbjct: 583 ETRGYVKNVLAYDAYYRYFMGD 604
>pdb|1SLY| Complex Of The 70-Kda Soluble Lytic Transglycosylase With Bulgecin
A
Length = 618
Score = 63.5 bits (153), Expect = 6e-11
Identities = 47/142 (33%), Positives = 69/142 (48%), Gaps = 7/142 (4%)
Query: 403 KAMAYAIARQESFLLPAVISRSFALGLMQIMPFNVGPFAKSLGMDNIDL-NDMFNPNIAL 461
++ A AIARQES P V S A GLMQIMP K + + +P +
Sbjct: 468 QSYAMAIARQESAWNPKVKSPVGASGLMQIMPGTATHTVKMFSIPGYSSPGQLLDPETNI 527
Query: 462 KFGNYYLNHLKKEF-NHPLFVAYAYNAGPGFLRRWLESSKRFKEKNHFEPWLSMELMPYS 520
G YL ++ ++F N+ +F + AYNAG G +R WL +S + +E +P+S
Sbjct: 528 NIGTSYLQYVYQQFGNNRIFSSAAYNAGLGRVRTWLGNS-----AGRIDAVAFVESIPFS 582
Query: 521 ETRMYGFRVMLNYLIYQEIFGN 542
ETR Y V+ Y+ G+
Sbjct: 583 ETRGYVKNVLAYDAYYRYFMGD 604
>pdb|1JSD|B Chain B, Crystal Structure Of Swine H9 Haemagglutinin
pdb|1JSI|B Chain B, Crystal Structure Of H9 Haemagglutinin Bound To Lstc
Receptor Analog
pdb|1JSH|B Chain B, Crystal Structure Of H9 Haemagglutinin Complexed With Lsta
Receptor Analog
Length = 176
Score = 31.6 bits (70), Expect = 0.24
Identities = 21/71 (29%), Positives = 32/71 (44%), Gaps = 2/71 (2%)
Query: 10 GMLGVGFSQTELNLKDLEKKPAGIVRDYYLWRYISDKKTSLENAKKAYELTQNKNNALQK 69
G++ FS+ E L + K ++D +W Y ++ LEN K E N NN K
Sbjct: 64 GIIDHEFSEIETRLNMINNKIDDQIQD--IWTYNAELLVLLENQKTLDEHDANVNNLYNK 121
Query: 70 AMQEKGSDNAE 80
+ GS+ E
Sbjct: 122 VKRALGSNAME 132
>pdb|1II7|A Chain A, Crystal Structure Of P. Furiosus Mre11 With Manganese And
Damp
pdb|1II7|B Chain B, Crystal Structure Of P. Furiosus Mre11 With Manganese And
Damp
Length = 333
Score = 28.9 bits (63), Expect = 1.6
Identities = 16/58 (27%), Positives = 31/58 (52%), Gaps = 4/58 (6%)
Query: 146 LYEELEILQSKHVSASLFKANAQVFSALFNHLSYEKKLQIFEKHIPIKELNRLLDENY 203
+Y++LEI K++S++ F+AN ++ LF I H ++E++ E+Y
Sbjct: 134 VYKDLEIHGMKYMSSAWFEANKEILKRLFRPTDN----AILMLHQGVREVSEARGEDY 187
>pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 28.1 bits (61), Expect = 2.7
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Query: 136 QIKIKEAYPVLYEELEILQSKHVSASLFKANAQVFSALFNHLSYEKKLQ-----IFEKHI 190
Q+KI+ + V EE+E + KH+ S +A+ H ++++ + EKHI
Sbjct: 432 QVKIR-GHRVELEEVESILLKHMYISE--------TAVSVHKDHQEQPYLCAYFVSEKHI 482
Query: 191 PIKELNRLLDENYPAFNRLIYQVILD 216
P+++L + E P + Y + LD
Sbjct: 483 PLEQLRQFSSEELPTYMIPSYFIQLD 508
>pdb|1DUS|A Chain A, Mj0882-A Hypothetical Protein From M. Jannaschii
Length = 194
Score = 26.9 bits (58), Expect = 6.0
Identities = 25/102 (24%), Positives = 46/102 (44%), Gaps = 11/102 (10%)
Query: 441 AKSLGMDNIDLNDMFNPNIALKFGNYYLNHLKKEFNHPLFVAYAYNAGPGFLRRWLESSK 500
A L +NI LN++ N +I + + Y N +++N + AG L R +E K
Sbjct: 86 AIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYN-KIITNPPIRAGKEVLHRIIEEGK 144
Query: 501 RFKEKNHFEPWLSMELMPYSETRMYGFRVMLNYLIYQEIFGN 542
K++ E W+ ++ G + + Y +++FGN
Sbjct: 145 ELL-KDNGEIWVVIQ-------TKQGAKSLAKY--XKDVFGN 176
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.136 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,216,014
Number of Sequences: 13198
Number of extensions: 134771
Number of successful extensions: 583
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 575
Number of HSP's gapped (non-prelim): 7
length of query: 560
length of database: 2,899,336
effective HSP length: 93
effective length of query: 467
effective length of database: 1,671,922
effective search space: 780787574
effective search space used: 780787574
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)