BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645271|ref|NP_207441.1| hypothetical protein
[Helicobacter pylori 26695]
(135 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1I7P|A Chain A, Crystal Structure Of Rat B5r In Complex... 25 2.3
pdb|1NDH| Cytochrome B5 Reductase (E.C.1.6.2.2) 25 4.0
pdb|1L2J|A Chain A, Human Estrogen Receptor Beta Ligand-Bin... 25 4.0
pdb|1QKM|A Chain A, Human Oestrogen Receptor Beta Ligand-Bi... 25 4.0
pdb|1QKT|A Chain A, Mutant Estrogen Nuclear Receptor Ligand... 24 5.2
pdb|1FVO|A Chain A, Crystal Structure Of Human Ornithine Tr... 24 5.2
pdb|1A52|A Chain A, Estrogen Receptor Alpha Ligand-Binding ... 24 6.8
pdb|1IMB|A Chain A, Inositol Monophosphatase (E.C.3.1.3.25)... 23 8.9
pdb|2HHM|A Chain A, Human Inositol Monophosphatase (E.C.3.1... 23 8.9
pdb|2U1A| Rna Binding Domain 2 Of Human U1a Protein, Nmr,... 23 8.9
>pdb|1I7P|A Chain A, Crystal Structure Of Rat B5r In Complex With Fad
pdb|1IB0|A Chain A, Crystal Structure Of Rat B5r In Complex With Fad And Nad
Length = 274
Score = 25.4 bits (54), Expect = 2.3
Identities = 10/26 (38%), Positives = 18/26 (68%)
Query: 50 NEQIKNLKSVPALEKLKNDFNERFKI 75
N+ K++ P LE+L+N+ + RFK+
Sbjct: 183 NQSEKDILLRPELEELRNEHSSRFKL 208
>pdb|1NDH| Cytochrome B5 Reductase (E.C.1.6.2.2)
Length = 272
Score = 24.6 bits (52), Expect = 4.0
Identities = 10/26 (38%), Positives = 18/26 (68%)
Query: 50 NEQIKNLKSVPALEKLKNDFNERFKI 75
N+ K++ P LE+L+N+ + RFK+
Sbjct: 181 NQTEKDILLRPELEELRNEHSARFKL 206
>pdb|1L2J|A Chain A, Human Estrogen Receptor Beta Ligand-Binding Domain In
Complex With (R,R)-5,11-Cis-Diethyl-5,6,11,12-
Tetrahydrochrysene-2,8-Diol
pdb|1L2J|B Chain B, Human Estrogen Receptor Beta Ligand-Binding Domain In
Complex With (R,R)-5,11-Cis-Diethyl-5,6,11,12-
Tetrahydrochrysene-2,8-Diol
Length = 271
Score = 24.6 bits (52), Expect = 4.0
Identities = 11/24 (45%), Positives = 15/24 (61%)
Query: 13 ILFVCLLPVLLMGLVWRLTRPPLK 36
+L C + VL+MGL+WR P K
Sbjct: 96 LLESCWMEVLMMGLMWRSIDHPGK 119
>pdb|1QKM|A Chain A, Human Oestrogen Receptor Beta Ligand-Binding Domain In
Complex With Partial Agonist Genistein
Length = 255
Score = 24.6 bits (52), Expect = 4.0
Identities = 11/24 (45%), Positives = 15/24 (61%)
Query: 13 ILFVCLLPVLLMGLVWRLTRPPLK 36
+L C + VL+MGL+WR P K
Sbjct: 76 LLESCWMEVLMMGLMWRSIDHPGK 99
>pdb|1QKT|A Chain A, Mutant Estrogen Nuclear Receptor Ligand Binding Domain
Complexed With Estradiol
Length = 248
Score = 24.3 bits (51), Expect = 5.2
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 10/123 (8%)
Query: 19 LPVLLMGLVWRLTRPPLK----QNI---PNKSLSLENLNEQIKNLKSVPALEKLKNDFNE 71
L +L++GLVWR P K N+ N+ S+E + E L + + ++ N E
Sbjct: 81 LEILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKSVEGMVEIFDMLLATSSRFRMMNLQGE 140
Query: 72 RFKICPKDKETLWLETIQKLVASEFFELEDAINFGQELENANPNYQQKIANATGLALKNK 131
F +C K L + ++S LE+ + + L+ +A A GL L+ +
Sbjct: 141 EF-VCLK-SIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITDTLIHLMAKA-GLTLQQQ 197
Query: 132 KEK 134
++
Sbjct: 198 HQR 200
>pdb|1FVO|A Chain A, Crystal Structure Of Human Ornithine Transcarbamylase
Complexed With Carbamoyl Phosphate
pdb|1FVO|B Chain B, Crystal Structure Of Human Ornithine Transcarbamylase
Complexed With Carbamoyl Phosphate
pdb|1OTH|A Chain A, Crystal Structure Of Human Ornithine Transcarbamoylase
Complexed With N-Phosphonacetyl-L-Ornithine
pdb|1C9Y|A Chain A, Human Ornithine Transcarbamylase: Crystallographic
Insights Into Substrate Recognition And Catalytic
Mechanism
pdb|1EP9|A Chain A, Human Ornithine Transcarbamylase: Crystallographic
Insights Into Substrate Recognition And Conformational
Change
Length = 321
Score = 24.3 bits (51), Expect = 5.2
Identities = 13/34 (38%), Positives = 17/34 (49%)
Query: 102 AINFGQELENANPNYQQKIANATGLALKNKKEKG 135
A FG L+ A P + A+ T LA + KE G
Sbjct: 175 AAKFGMHLQAATPKGYEPDASVTKLAEQYAKENG 208
>pdb|1A52|A Chain A, Estrogen Receptor Alpha Ligand-Binding Domain Complexed To
Estradiol
pdb|1A52|B Chain B, Estrogen Receptor Alpha Ligand-Binding Domain Complexed To
Estradiol
Length = 258
Score = 23.9 bits (50), Expect = 6.8
Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 11/139 (7%)
Query: 3 NLTYYAYMYLILFVCLLPVLLMGLVWRLTRPPLK----QNI---PNKSLSLENLNEQIKN 55
+LT + ++L L L +L++GLVWR P K N+ N+ +E + E
Sbjct: 73 DLTLHDQVHL-LECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDM 131
Query: 56 LKSVPALEKLKNDFNERFKICPKDKETLWLETIQKLVASEFFELEDAINFGQELENANPN 115
L + + ++ N E F +C K L + ++S LE+ + + L+
Sbjct: 132 LLATSSRFRMMNLQGEEF-VCLK-SIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITDT 189
Query: 116 YQQKIANATGLALKNKKEK 134
+A A GL L+ + E+
Sbjct: 190 LIHLMAKA-GLTLQQQHER 207
>pdb|1IMB|A Chain A, Inositol Monophosphatase (E.C.3.1.3.25) Complexed With
Gadolinium And L-Myo-Inositol-1-Phosphate
pdb|1IMB|B Chain B, Inositol Monophosphatase (E.C.3.1.3.25) Complexed With
Gadolinium And L-Myo-Inositol-1-Phosphate
pdb|1IME|A Chain A, Inositol Monophosphatase (E.C.3.1.3.25) Complexed With
Calcium
pdb|1IME|B Chain B, Inositol Monophosphatase (E.C.3.1.3.25) Complexed With
Calcium
pdb|1IMA|A Chain A, Inositol Monophosphatase (E.C.3.1.3.25) Complexed With
Gadolinium And D-Myo-Inositol-1-Phosphate
pdb|1IMA|B Chain B, Inositol Monophosphatase (E.C.3.1.3.25) Complexed With
Gadolinium And D-Myo-Inositol-1-Phosphate
pdb|1IMC|B Chain B, Inositol Monophosphatase (E.C.3.1.3.25) Complexed With
Manganese (Ii) And Chloride
pdb|1IMD|B Chain B, Inositol Monophosphatase (E.C.3.1.3.25) Complexed With
Manganese (Ii) And Phosphate
pdb|1IMC|A Chain A, Inositol Monophosphatase (E.C.3.1.3.25) Complexed With
Manganese (Ii) And Chloride
pdb|1IMD|A Chain A, Inositol Monophosphatase (E.C.3.1.3.25) Complexed With
Manganese (Ii) And Phosphate
pdb|1IMF| Inositol Monophosphatase (E.C.3.1.3.25) (Apoenzyme)
Length = 277
Score = 23.5 bits (49), Expect = 8.9
Identities = 14/47 (29%), Positives = 24/47 (50%), Gaps = 1/47 (2%)
Query: 63 EKLKNDFNERFKICPKDKETLWLETIQKLVASEFFELEDAINF-GQE 108
E +KN+ N K P D T + ++K++ S E + +F G+E
Sbjct: 25 EAIKNEMNVMLKSSPVDLVTATDQKVEKMLISSIKEKYPSHSFIGEE 71
>pdb|2HHM|A Chain A, Human Inositol Monophosphatase (E.C.3.1.3.25) Dimer
Complex With Gadolinium And Sulfate
pdb|2HHM|B Chain B, Human Inositol Monophosphatase (E.C.3.1.3.25) Dimer
Complex With Gadolinium And Sulfate
pdb|1AWB|A Chain A, Human Myo-Inositol Monophosphatase In Complex With
D-Inositol-1-Phosphate And Calcium
pdb|1AWB|B Chain B, Human Myo-Inositol Monophosphatase In Complex With
D-Inositol-1-Phosphate And Calcium
Length = 276
Score = 23.5 bits (49), Expect = 8.9
Identities = 14/47 (29%), Positives = 24/47 (50%), Gaps = 1/47 (2%)
Query: 63 EKLKNDFNERFKICPKDKETLWLETIQKLVASEFFELEDAINF-GQE 108
E +KN+ N K P D T + ++K++ S E + +F G+E
Sbjct: 24 EAIKNEMNVMLKSSPVDLVTATDQKVEKMLISSIKEKYPSHSFIGEE 70
>pdb|2U1A| Rna Binding Domain 2 Of Human U1a Protein, Nmr, 20 Structures
Length = 88
Score = 23.5 bits (49), Expect = 8.9
Identities = 11/23 (47%), Positives = 13/23 (55%)
Query: 34 PLKQNIPNKSLSLENLNEQIKNL 56
PL +N PN L L NL E+ L
Sbjct: 6 PLSENPPNHILFLTNLPEETNEL 28
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.136 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 740,893
Number of Sequences: 13198
Number of extensions: 25244
Number of successful extensions: 93
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 87
Number of HSP's gapped (non-prelim): 10
length of query: 135
length of database: 2,899,336
effective HSP length: 79
effective length of query: 56
effective length of database: 1,856,694
effective search space: 103974864
effective search space used: 103974864
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)